RNA–Protein interactions for RNA: ENST00000238112.7

CPSF3-201, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-201ENST00000238112 CTNNBL1Q8WYA6 563 aaPredicted RBP20.35■□□□□ 0.85
CPSF3-201ENST00000238112 RFFLQ8WZ73 363 aa20.35■□□□□ 0.85
CPSF3-201ENST00000238112 WDR18Q9BV38 432 aa20.35■□□□□ 0.85
CPSF3-201ENST00000238112 SEL1LQ9UBV2 794 aa20.35■□□□□ 0.85
CPSF3-201ENST00000238112 UBE4BO95155 1302 aa20.35■□□□□ 0.85
CPSF3-201ENST00000238112 ANKRD31Q8N7Z5 1873 aa20.35■□□□□ 0.85
CPSF3-201ENST00000238112 CFBP00751 764 aa20.35■□□□□ 0.85
CPSF3-201ENST00000238112 HPDP32754 393 aaPredicted RBP20.35■□□□□ 0.85
CPSF3-201ENST00000238112 MDH1P40925 334 aaKnown RBP20.35■□□□□ 0.85
CPSF3-201ENST00000238112 LIG3P49916 1009 aa20.35■□□□□ 0.85
CPSF3-201ENST00000238112 TRAF1Q13077 416 aa20.35■□□□□ 0.85
CPSF3-201ENST00000238112 SPATS2Q86XZ4 545 aaKnown RBP20.35■□□□□ 0.85
CPSF3-201ENST00000238112 FAM178BQ8IXR5 827 aa20.35■□□□□ 0.85
CPSF3-201ENST00000238112 SLC35G2Q8TBE7 412 aa20.35■□□□□ 0.85
CPSF3-201ENST00000238112 OSGEPQ9NPF4 335 aa20.35■□□□□ 0.85
CPSF3-201ENST00000238112 UTP11Q9Y3A2 253 aaKnown RBP20.35■□□□□ 0.85
CPSF3-201ENST00000238112 BHMG1C9JSJ3 638 aaPredicted RBP20.34■□□□□ 0.85
CPSF3-201ENST00000238112 ONECUT3O60422 494 aaPredicted RBP20.34■□□□□ 0.85
CPSF3-201ENST00000238112 KIAA0754O94854 1291 aa20.34■□□□□ 0.85
CPSF3-201ENST00000238112 TMEM253P0C7T8 217 aa20.34■□□□□ 0.85
CPSF3-201ENST00000238112 INPP5BP32019 993 aa20.34■□□□□ 0.85
CPSF3-201ENST00000238112 CYP2J2P51589 502 aa20.34■□□□□ 0.85
CPSF3-201ENST00000238112 STAT2P52630 851 aa20.34■□□□□ 0.85
CPSF3-201ENST00000238112 FKBP1AP62942 108 aaKnown RBP20.34■□□□□ 0.85
CPSF3-201ENST00000238112 PPP2R5CQ13362 524 aa20.34■□□□□ 0.85
CPSF3-201ENST00000238112 COG2Q14746 738 aa20.34■□□□□ 0.85
CPSF3-201ENST00000238112 DACT2Q5SW24 774 aa20.34■□□□□ 0.85
CPSF3-201ENST00000238112 SLC30A10Q6XR72 485 aa20.34■□□□□ 0.85
CPSF3-201ENST00000238112 KSR1Q8IVT5 923 aa20.34■□□□□ 0.85
CPSF3-201ENST00000238112 UBLCP1Q8WVY7 318 aaPredicted RBP20.34■□□□□ 0.85
CPSF3-201ENST00000238112 MASTLQ96GX5 879 aa20.34■□□□□ 0.85
CPSF3-201ENST00000238112 NEUROG2Q9H2A3 272 aa20.34■□□□□ 0.85
CPSF3-201ENST00000238112 NCANO14594 1321 aa20.34■□□□□ 0.85
CPSF3-201ENST00000238112 NRXN2Q9P2S2 1712 aa20.34■□□□□ 0.85
CPSF3-201ENST00000238112 DAPK3O43293 454 aa20.33■□□□□ 0.85
CPSF3-201ENST00000238112 BUB1BO60566 1050 aaPredicted RBP20.33■□□□□ 0.85
CPSF3-201ENST00000238112 GAS7O60861 476 aa20.33■□□□□ 0.85
CPSF3-201ENST00000238112 PSMD10O75832 226 aa20.33■□□□□ 0.85
CPSF3-201ENST00000238112 ABCB4P21439 1286 aa20.33■□□□□ 0.85
CPSF3-201ENST00000238112 UAP1Q16222 522 aaPredicted RBP20.33■□□□□ 0.85
CPSF3-201ENST00000238112 PTGISQ16647 500 aa20.33■□□□□ 0.85
CPSF3-201ENST00000238112 RUFY4Q6ZNE9 571 aa20.33■□□□□ 0.85
CPSF3-201ENST00000238112 ZNF720Q7Z2F6 126 aa20.33■□□□□ 0.85
CPSF3-201ENST00000238112 NLGN1Q8N2Q7 840 aa20.33■□□□□ 0.85
CPSF3-201ENST00000238112 SERPINA10Q9UK55 444 aa20.33■□□□□ 0.85
CPSF3-201ENST00000238112 ZBTB39O15060 712 aa20.33■□□□□ 0.84
CPSF3-201ENST00000238112 TTI1O43156 1089 aa20.33■□□□□ 0.84
CPSF3-201ENST00000238112 FGGP02679 453 aa20.33■□□□□ 0.84
CPSF3-201ENST00000238112 PRELPP51888 382 aa20.33■□□□□ 0.84
CPSF3-201ENST00000238112 CBWD6Q4V339 395 aa20.33■□□□□ 0.84
CPSF3-201ENST00000238112 CBWD3Q5JTY5 395 aa20.33■□□□□ 0.84
CPSF3-201ENST00000238112 CBWD5Q5RIA9 395 aa20.33■□□□□ 0.84
CPSF3-201ENST00000238112 OR2W6PQ8NHA6 318 aa20.33■□□□□ 0.84
CPSF3-201ENST00000238112 INTS2Q9H0H0 1204 aaKnown RBP20.33■□□□□ 0.84
CPSF3-201ENST00000238112 AGPAT3Q9NRZ7 376 aa20.33■□□□□ 0.84
CPSF3-201ENST00000238112 FRMPD4Q14CM0 1322 aa20.33■□□□□ 0.84
CPSF3-201ENST00000238112 A0A1W2PRG0 241 aa20.32■□□□□ 0.84
CPSF3-201ENST00000238112 H0YGN5 161 aa20.32■□□□□ 0.84
CPSF3-201ENST00000238112 JAG1P78504 1218 aa20.32■□□□□ 0.84
CPSF3-201ENST00000238112 ZNF844Q08AG5 666 aa20.32■□□□□ 0.84
CPSF3-201ENST00000238112 BIRC3Q13489 604 aa20.32■□□□□ 0.84
CPSF3-201ENST00000238112 PPP2R5AQ15172 486 aa20.32■□□□□ 0.84
CPSF3-201ENST00000238112 ODR4Q5SWX8 454 aa20.32■□□□□ 0.84
CPSF3-201ENST00000238112 NAA35Q5VZE5 725 aa20.32■□□□□ 0.84
CPSF3-201ENST00000238112 MICALCLQ6ZW33 695 aa20.32■□□□□ 0.84
CPSF3-201ENST00000238112 ZNF622Q969S3 477 aaKnown RBP eCLIP20.32■□□□□ 0.84
CPSF3-201ENST00000238112 NACC1Q96RE7 527 aa20.32■□□□□ 0.84
CPSF3-201ENST00000238112 FAM114A2Q9NRY5 505 aa20.32■□□□□ 0.84
CPSF3-201ENST00000238112 SEPT11Q9NVA2 429 aaKnown RBP20.32■□□□□ 0.84
CPSF3-201ENST00000238112 APEX2Q9UBZ4 518 aa20.32■□□□□ 0.84
CPSF3-201ENST00000238112 TTC7AQ9ULT0 858 aaPredicted RBP20.32■□□□□ 0.84
CPSF3-201ENST00000238112 DIS3Q9Y2L1 958 aaKnown RBP20.32■□□□□ 0.84
CPSF3-201ENST00000238112 NFS1Q9Y697 457 aa20.32■□□□□ 0.84
CPSF3-201ENST00000238112 ATXN2Q99700 1313 aaKnown RBP20.32■□□□□ 0.84
CPSF3-201ENST00000238112 ECE2O60344 883 aa20.32■□□□□ 0.84
CPSF3-201ENST00000238112 POLR2MP0CAP2 368 aa20.32■□□□□ 0.84
CPSF3-201ENST00000238112 TRIM49P0CI25 452 aa20.32■□□□□ 0.84
CPSF3-201ENST00000238112 TRIM49CP0CI26 452 aa20.32■□□□□ 0.84
CPSF3-201ENST00000238112 MYL7Q01449 175 aa20.32■□□□□ 0.84
CPSF3-201ENST00000238112 OLIG1Q8TAK6 271 aa20.32■□□□□ 0.84
CPSF3-201ENST00000238112 SLC5A5Q92911 643 aa20.32■□□□□ 0.84
CPSF3-201ENST00000238112 TDRD3Q9H7E2 651 aaKnown RBP20.32■□□□□ 0.84
CPSF3-201ENST00000238112 ODF2LQ9ULJ1 636 aa20.32■□□□□ 0.84
CPSF3-201ENST00000238112 TNFAIP3P21580 790 aa20.31■□□□□ 0.84
CPSF3-201ENST00000238112 ZNF131P52739 623 aa20.31■□□□□ 0.84
CPSF3-201ENST00000238112 PRPF4BQ13523 1007 aaKnown RBP20.31■□□□□ 0.84
CPSF3-201ENST00000238112 ZNF473Q8WTR7 871 aaKnown RBP20.31■□□□□ 0.84
CPSF3-201ENST00000238112 FIZ1Q96SL8 496 aa20.31■□□□□ 0.84
CPSF3-201ENST00000238112 CELF4Q9BZC1 486 aaKnown RBP20.31■□□□□ 0.84
CPSF3-201ENST00000238112 EHMT1Q9H9B1 1298 aa20.31■□□□□ 0.84
CPSF3-201ENST00000238112 KCND2Q9NZV8 630 aa20.31■□□□□ 0.84
CPSF3-201ENST00000238112 MUTP22033 750 aa20.31■□□□□ 0.84
CPSF3-201ENST00000238112 NLRP14Q86W24 1093 aa20.31■□□□□ 0.84
CPSF3-201ENST00000238112 TEX2Q8IWB9 1127 aa20.31■□□□□ 0.84
CPSF3-201ENST00000238112 SYCP3Q8IZU3 236 aa20.31■□□□□ 0.84
CPSF3-201ENST00000238112 CSRNP1Q96S65 589 aa20.31■□□□□ 0.84
CPSF3-201ENST00000238112 NAP1L3Q99457 506 aaPredicted RBP20.31■□□□□ 0.84
CPSF3-201ENST00000238112 DPH5Q9H2P9 285 aa20.31■□□□□ 0.84
CPSF3-201ENST00000238112 DMAC2Q9NW81 257 aa20.31■□□□□ 0.84
CPSF3-201ENST00000238112 BCCIPQ9P287 314 aaKnown RBP eCLIP20.31■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 108.7 ms