RNA–Protein interactions for RNA: ENST00000626660.1

SQSTM1-216, Transcript of sequestosome 1, humanhuman

TSL 5 BASIC

Gene SQSTM1, Length 274 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-216ENST00000626660 DNAJB3Q8WWF6 145 aa21.3■■□□□ 1
SQSTM1-216ENST00000626660 WNT8BQ93098 351 aa21.3■■□□□ 1
SQSTM1-216ENST00000626660 EPSTI1Q96J88 318 aa21.3■■□□□ 1
SQSTM1-216ENST00000626660 MAP7D2Q96T17 732 aa21.3■■□□□ 1
SQSTM1-216ENST00000626660 SUGCTQ9HAC7 445 aa21.3■■□□□ 1
SQSTM1-216ENST00000626660 TANC1Q9C0D5 1861 aa21.29■■□□□ 1
SQSTM1-216ENST00000626660 CKBP12277 381 aa21.29■■□□□ 1
SQSTM1-216ENST00000626660 TMEM119Q4V9L6 283 aa21.29■■□□□ 1
SQSTM1-216ENST00000626660 NME8Q8N427 588 aa21.29■■□□□ 1
SQSTM1-216ENST00000626660 TMEM199Q8N511 208 aa21.29■■□□□ 1
SQSTM1-216ENST00000626660 PNMA5Q96PV4 448 aa21.29■■□□□ 1
SQSTM1-216ENST00000626660 CEP89Q96ST8 783 aa21.29■■□□□ 1
SQSTM1-216ENST00000626660 PLIN2Q99541 437 aa21.29■■□□□ 1
SQSTM1-216ENST00000626660 PCDHA7Q9UN72 937 aa21.29■■□□□ 1
SQSTM1-216ENST00000626660 LTBP2Q14767 1821 aa21.29■■□□□ 1
SQSTM1-216ENST00000626660 UMODL1Q5DID0 1318 aa21.29■■□□□ 1
SQSTM1-216ENST00000626660 M0QZ92 97 aa21.28■■□□□ 1
SQSTM1-216ENST00000626660 GAS2O43903 313 aaKnown RBP21.28■■□□□ 1
SQSTM1-216ENST00000626660 DGAT1O75907 488 aa21.28■■□□□ 1
SQSTM1-216ENST00000626660 EYA4O95677 639 aa21.28■■□□□ 1
SQSTM1-216ENST00000626660 CLCN3P51790 818 aa21.28■■□□□ 1
SQSTM1-216ENST00000626660 CCL23P55773 120 aa21.28■■□□□ 1
SQSTM1-216ENST00000626660 EMC2Q15006 297 aa21.28■■□□□ 1
SQSTM1-216ENST00000626660 KARSQ15046 597 aaKnown RBP21.28■■□□□ 1
SQSTM1-216ENST00000626660 IER5Q5VY09 327 aa21.28■■□□□ 1
SQSTM1-216ENST00000626660 MFSD5Q6N075 450 aa21.28■■□□□ 1
SQSTM1-216ENST00000626660 USP49Q70CQ1 688 aa21.28■■□□□ 1
SQSTM1-216ENST00000626660 LRRC8DQ7L1W4 858 aa21.28■■□□□ 1
SQSTM1-216ENST00000626660 KIAA0319LQ8IZA0 1049 aa21.28■■□□□ 1
SQSTM1-216ENST00000626660 LRRC71Q8N4P6 559 aa21.28■■□□□ 1
SQSTM1-216ENST00000626660 BHMT2Q9H2M3 363 aa21.28■■□□□ 1
SQSTM1-216ENST00000626660 DHX33Q9H6R0 707 aaKnown RBP21.28■■□□□ 1
SQSTM1-216ENST00000626660 ATP6V0A4Q9HBG4 840 aa21.28■■□□□ 1
SQSTM1-216ENST00000626660 AKT3Q9Y243 479 aa21.28■■□□□ 1
SQSTM1-216ENST00000626660 RSPH10B2B2RC85 870 aa21.27■■□□□ 1
SQSTM1-216ENST00000626660 E9PMD0 336 aa21.27■■□□□ 1
SQSTM1-216ENST00000626660 USO1O60763 962 aaKnown RBP21.27■■□□□ 1
SQSTM1-216ENST00000626660 PARNO95453 639 aaKnown RBP21.27■■□□□ 1
SQSTM1-216ENST00000626660 CTSHP09668 335 aa21.27■■□□□ 1
SQSTM1-216ENST00000626660 RSPH10BP0C881 870 aa21.27■■□□□ 1
SQSTM1-216ENST00000626660 PLCG1P19174 1290 aa21.27■■□□□ 1
SQSTM1-216ENST00000626660 ITGB8P26012 769 aa21.27■■□□□ 1
SQSTM1-216ENST00000626660 MRPS6P82932 125 aaKnown RBP21.27■■□□□ 1
SQSTM1-216ENST00000626660 AXDND1Q5T1B0 1012 aaPredicted RBP21.27■■□□□ 1
SQSTM1-216ENST00000626660 ZNF618Q5T7W0 954 aa21.27■■□□□ 1
SQSTM1-216ENST00000626660 BADQ92934 168 aa21.27■■□□□ 1
SQSTM1-216ENST00000626660 MTRQ99707 1265 aa21.27■■□□□ 1
SQSTM1-216ENST00000626660 BMP2KQ9NSY1 1161 aaPredicted RBP21.27■■□□□ 1
SQSTM1-216ENST00000626660 FAM13BQ9NYF5 915 aa21.27■■□□□ 1
SQSTM1-216ENST00000626660 IGKV6-21A0A0C4DH24 114 aa21.26■□□□□ 0.99
SQSTM1-216ENST00000626660 SSBP05455 408 aaKnown RBP eCLIP21.26■□□□□ 0.99
SQSTM1-216ENST00000626660 IQCF3P0C7M6 154 aa21.26■□□□□ 0.99
SQSTM1-216ENST00000626660 RFC2P35250 354 aa21.26■□□□□ 0.99
SQSTM1-216ENST00000626660 FPGSQ05932 587 aa21.26■□□□□ 0.99
SQSTM1-216ENST00000626660 PPIGQ13427 754 aaKnown RBP eCLIP21.26■□□□□ 0.99
SQSTM1-216ENST00000626660 RRAGBQ5VZM2 374 aa21.26■□□□□ 0.99
SQSTM1-216ENST00000626660 PADI6Q6TGC4 694 aa21.26■□□□□ 0.99
SQSTM1-216ENST00000626660 CHRDL2Q6WN34 429 aa21.26■□□□□ 0.99
SQSTM1-216ENST00000626660 ZNF710Q8N1W2 664 aa21.26■□□□□ 0.99
SQSTM1-216ENST00000626660 LINC01465Q8N7H1 131 aa21.26■□□□□ 0.99
SQSTM1-216ENST00000626660 MCPH1Q8NEM0 835 aa21.26■□□□□ 0.99
SQSTM1-216ENST00000626660 TCP11Q8WWU5 503 aa21.26■□□□□ 0.99
SQSTM1-216ENST00000626660 WNT8AQ9H1J5 351 aa21.26■□□□□ 0.99
SQSTM1-216ENST00000626660 MDM2Q00987 491 aaPredicted RBP21.25■□□□□ 0.99
SQSTM1-216ENST00000626660 CSPP1Q1MSJ5 1256 aa21.25■□□□□ 0.99
SQSTM1-216ENST00000626660 FAM26DQ5JW98 314 aa21.25■□□□□ 0.99
SQSTM1-216ENST00000626660 SHC4Q6S5L8 630 aa21.25■□□□□ 0.99
SQSTM1-216ENST00000626660 CCDC73Q6ZRK6 1079 aa21.25■□□□□ 0.99
SQSTM1-216ENST00000626660 KCNK18Q7Z418 384 aa21.25■□□□□ 0.99
SQSTM1-216ENST00000626660 SCLYQ96I15 445 aa21.25■□□□□ 0.99
SQSTM1-216ENST00000626660 GDPD2Q9HCC8 539 aa21.25■□□□□ 0.99
SQSTM1-216ENST00000626660 SUCLA2Q9P2R7 463 aaPredicted RBP21.25■□□□□ 0.99
SQSTM1-216ENST00000626660 STK17AQ9UEE5 414 aa21.25■□□□□ 0.99
SQSTM1-216ENST00000626660 TRPV2Q9Y5S1 764 aa21.25■□□□□ 0.99
SQSTM1-216ENST00000626660 CDY2AQ9Y6F7 541 aa21.25■□□□□ 0.99
SQSTM1-216ENST00000626660 SCN5AQ14524 2016 aa21.24■□□□□ 0.99
SQSTM1-216ENST00000626660 VTNP04004 478 aa21.24■□□□□ 0.99
SQSTM1-216ENST00000626660 PLA2G4BP0C869 781 aa21.24■□□□□ 0.99
SQSTM1-216ENST00000626660 MAGEA10P43363 369 aaPredicted RBP21.24■□□□□ 0.99
SQSTM1-216ENST00000626660 CDC42EP1Q00587 391 aa21.24■□□□□ 0.99
SQSTM1-216ENST00000626660 TMEM62Q0P6H9 643 aa21.24■□□□□ 0.99
SQSTM1-216ENST00000626660 RESP18Q5W5W9 173 aa21.24■□□□□ 0.99
SQSTM1-216ENST00000626660 ADALQ6DHV7 355 aa21.24■□□□□ 0.99
SQSTM1-216ENST00000626660 PSPC1Q8WXF1 523 aaKnown RBP21.24■□□□□ 0.99
SQSTM1-216ENST00000626660 SCLT1Q96NL6 688 aa21.24■□□□□ 0.99
SQSTM1-216ENST00000626660 GOLGA6L4A6NEF3 574 aa21.23■□□□□ 0.99
SQSTM1-216ENST00000626660 CSF2RAP15509 400 aa21.23■□□□□ 0.99
SQSTM1-216ENST00000626660 CYP11B2P19099 503 aa21.23■□□□□ 0.99
SQSTM1-216ENST00000626660 STAT6P42226 847 aa21.23■□□□□ 0.99
SQSTM1-216ENST00000626660 MKRN4PQ13434 485 aaPredicted RBP21.23■□□□□ 0.99
SQSTM1-216ENST00000626660 TRAF7Q6Q0C0 670 aa21.23■□□□□ 0.99
SQSTM1-216ENST00000626660 RPUSD2Q8IZ73 545 aaKnown RBP21.23■□□□□ 0.99
SQSTM1-216ENST00000626660 PDILTQ8N807 584 aa21.23■□□□□ 0.99
SQSTM1-216ENST00000626660 RAD54LQ92698 747 aa21.23■□□□□ 0.99
SQSTM1-216ENST00000626660 TMEM143Q96AN5 459 aa21.23■□□□□ 0.99
SQSTM1-216ENST00000626660 PANK2Q9BZ23 570 aa21.23■□□□□ 0.99
SQSTM1-216ENST00000626660 CELF4Q9BZC1 486 aaKnown RBP21.23■□□□□ 0.99
SQSTM1-216ENST00000626660 XPNPEP1Q9NQW7 623 aa21.23■□□□□ 0.99
SQSTM1-216ENST00000626660 GINS2Q9Y248 185 aa21.23■□□□□ 0.99
SQSTM1-216ENST00000626660 CHRNA1P02708 482 aa21.22■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms