RNA–Protein interactions for RNA: ENST00000601981.5

UPF1-213, Transcript of UPF1, RNA helicase and ATPase, human

TSL 5

Gene UPF1, Length 556 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UPF1-213	ENST00000601981	SETD4	Q9NVD3	440 aa		11.22	□□□□□ -0.61
UPF1-213	ENST00000601981	RGL1	Q9NZL6	768 aa		11.22	□□□□□ -0.61
UPF1-213	ENST00000601981	CCDC39	Q9UFE4	941 aa		11.22	□□□□□ -0.61
UPF1-213	ENST00000601981	ZNF862	O60290	1169 aa		11.21	□□□□□ -0.61
UPF1-213	ENST00000601981	SLITRK3	O94933	977 aa		11.21	□□□□□ -0.61
UPF1-213	ENST00000601981	CD4	P01730	458 aa		11.21	□□□□□ -0.61
UPF1-213	ENST00000601981	SLFN14	P0C7P3	912 aa		11.21	□□□□□ -0.61
UPF1-213	ENST00000601981	TMOD1	P28289	359 aa		11.21	□□□□□ -0.61
UPF1-213	ENST00000601981	HOXC8	P31273	242 aa		11.21	□□□□□ -0.61
UPF1-213	ENST00000601981	YWHAB	P31946	246 aa	Known RBP	11.21	□□□□□ -0.61
UPF1-213	ENST00000601981	NLRP12	P59046	1061 aa		11.21	□□□□□ -0.61
UPF1-213	ENST00000601981	MDM2	Q00987	491 aa	Predicted RBP	11.21	□□□□□ -0.61
UPF1-213	ENST00000601981	TBC1D8B	Q0IIM8	1120 aa		11.21	□□□□□ -0.61
UPF1-213	ENST00000601981	PTK7	Q13308	1070 aa		11.21	□□□□□ -0.61
UPF1-213	ENST00000601981	POSTN	Q15063	836 aa		11.21	□□□□□ -0.61
UPF1-213	ENST00000601981	MTERF2	Q49AM1	385 aa		11.21	□□□□□ -0.61
UPF1-213	ENST00000601981	HABP4	Q5JVS0	413 aa	Known RBP	11.21	□□□□□ -0.61
UPF1-213	ENST00000601981	GDF6	Q6KF10	455 aa	Predicted RBP	11.21	□□□□□ -0.61
UPF1-213	ENST00000601981	USP49	Q70CQ1	688 aa		11.21	□□□□□ -0.61
UPF1-213	ENST00000601981	CABP7	Q86V35	215 aa		11.21	□□□□□ -0.61
UPF1-213	ENST00000601981	CATSPER3	Q86XQ3	398 aa		11.21	□□□□□ -0.61
UPF1-213	ENST00000601981	CEP57L1	Q8IYX8	460 aa		11.21	□□□□□ -0.61
UPF1-213	ENST00000601981	CAGE1	Q8TC20	777 aa		11.21	□□□□□ -0.61
UPF1-213	ENST00000601981	LMBR1	Q8WVP7	490 aa		11.21	□□□□□ -0.61
UPF1-213	ENST00000601981	EPSTI1	Q96J88	318 aa		11.21	□□□□□ -0.61
UPF1-213	ENST00000601981	NIFK	Q9BYG3	293 aa	Known RBP	11.21	□□□□□ -0.61
UPF1-213	ENST00000601981	NAT10	Q9H0A0	1025 aa	Known RBP	11.21	□□□□□ -0.61
UPF1-213	ENST00000601981	DNAJC25	Q9H1X3	360 aa		11.21	□□□□□ -0.61
UPF1-213	ENST00000601981	CBX8	Q9HC52	389 aa		11.21	□□□□□ -0.61
UPF1-213	ENST00000601981	ANKEF1	Q9NU02	776 aa		11.21	□□□□□ -0.61
UPF1-213	ENST00000601981	TRMT13	Q9NUP7	481 aa	Known RBP	11.21	□□□□□ -0.61
UPF1-213	ENST00000601981	SERTAD1	Q9UHV2	236 aa		11.21	□□□□□ -0.61
UPF1-213	ENST00000601981		A0A087X0B3	334 aa		11.2	□□□□□ -0.62
UPF1-213	ENST00000601981		M0QZ92	97 aa		11.2	□□□□□ -0.62
UPF1-213	ENST00000601981	GAS2	O43903	313 aa	Known RBP	11.2	□□□□□ -0.62
UPF1-213	ENST00000601981	CAND2	O75155	1236 aa		11.2	□□□□□ -0.62
UPF1-213	ENST00000601981	CYP2C9	P11712	490 aa		11.2	□□□□□ -0.62
UPF1-213	ENST00000601981	RAG1	P15918	1043 aa		11.2	□□□□□ -0.62
UPF1-213	ENST00000601981	ATP4A	P20648	1035 aa		11.2	□□□□□ -0.62
UPF1-213	ENST00000601981	RFC5	P40937	340 aa		11.2	□□□□□ -0.62
UPF1-213	ENST00000601981	ZNF165	P49910	485 aa		11.2	□□□□□ -0.62
UPF1-213	ENST00000601981	DNM2	P50570	870 aa		11.2	□□□□□ -0.62
UPF1-213	ENST00000601981	POLG	P54098	1239 aa	Predicted RBP	11.2	□□□□□ -0.62
UPF1-213	ENST00000601981	FAAP100	Q0VG06	881 aa		11.2	□□□□□ -0.62
UPF1-213	ENST00000601981	PNOC	Q13519	176 aa		11.2	□□□□□ -0.62
UPF1-213	ENST00000601981	E2F4	Q16254	413 aa		11.2	□□□□□ -0.62
UPF1-213	ENST00000601981	XKR9	Q5GH70	373 aa		11.2	□□□□□ -0.62
UPF1-213	ENST00000601981	NT5DC1	Q5TFE4	455 aa		11.2	□□□□□ -0.62
UPF1-213	ENST00000601981	SH3RF1	Q7Z6J0	888 aa		11.2	□□□□□ -0.62
UPF1-213	ENST00000601981	SERINC5	Q86VE9	423 aa		11.2	□□□□□ -0.62
UPF1-213	ENST00000601981	ZNF710	Q8N1W2	664 aa		11.2	□□□□□ -0.62
UPF1-213	ENST00000601981	IQUB	Q8NA54	791 aa		11.2	□□□□□ -0.62
UPF1-213	ENST00000601981	SLC7A3	Q8WY07	619 aa		11.2	□□□□□ -0.62
UPF1-213	ENST00000601981	DHX58	Q96C10	678 aa		11.2	□□□□□ -0.62
UPF1-213	ENST00000601981	PDLIM2	Q96JY6	352 aa		11.2	□□□□□ -0.62
UPF1-213	ENST00000601981	CEP170P1	Q96L14	293 aa		11.2	□□□□□ -0.62
UPF1-213	ENST00000601981	BPIFA3	Q9BQP9	254 aa		11.2	□□□□□ -0.62
UPF1-213	ENST00000601981	CCSER1	Q9C0I3	900 aa		11.2	□□□□□ -0.62
UPF1-213	ENST00000601981	TRPV6	Q9H1D0	765 aa		11.2	□□□□□ -0.62
UPF1-213	ENST00000601981	HIPK3	Q9H422	1215 aa		11.2	□□□□□ -0.62
UPF1-213	ENST00000601981	PDLIM7	Q9NR12	457 aa		11.2	□□□□□ -0.62
UPF1-213	ENST00000601981	KIAA1024	Q9UPX6	916 aa		11.2	□□□□□ -0.62
UPF1-213	ENST00000601981	DNM3	Q9UQ16	869 aa		11.2	□□□□□ -0.62
UPF1-213	ENST00000601981	LTBP2	Q14767	1821 aa		11.19	□□□□□ -0.62
UPF1-213	ENST00000601981	SMIM35	A0A1B0GVV1	85 aa		11.19	□□□□□ -0.62
UPF1-213	ENST00000601981	MBLAC1	A4D2B0	266 aa	Predicted RBP	11.19	□□□□□ -0.62
UPF1-213	ENST00000601981	ARHGEF35	A5YM69	484 aa		11.19	□□□□□ -0.62
UPF1-213	ENST00000601981	PITPNM1	O00562	1244 aa		11.19	□□□□□ -0.62
UPF1-213	ENST00000601981	TREH	O43280	583 aa		11.19	□□□□□ -0.62
UPF1-213	ENST00000601981	MED24	O75448	989 aa		11.19	□□□□□ -0.62
UPF1-213	ENST00000601981	PARN	O95453	639 aa	Known RBP	11.19	□□□□□ -0.62
UPF1-213	ENST00000601981	SPATA31C1	P0DKV0	1188 aa		11.19	□□□□□ -0.62
UPF1-213	ENST00000601981	KLRC1	P26715	233 aa		11.19	□□□□□ -0.62
UPF1-213	ENST00000601981	POTEG	Q6S5H5	508 aa		11.19	□□□□□ -0.62
UPF1-213	ENST00000601981	MTHFD1L	Q6UB35	978 aa		11.19	□□□□□ -0.62
UPF1-213	ENST00000601981	C11orf57	Q6ZUT1	292 aa	Predicted RBP	11.19	□□□□□ -0.62
UPF1-213	ENST00000601981	ANO5	Q75V66	913 aa		11.19	□□□□□ -0.62
UPF1-213	ENST00000601981	METTL13	Q8N6R0	699 aa		11.19	□□□□□ -0.62
UPF1-213	ENST00000601981	PDILT	Q8N807	584 aa		11.19	□□□□□ -0.62
UPF1-213	ENST00000601981	TRIML1	Q8N9V2	468 aa		11.19	□□□□□ -0.62
UPF1-213	ENST00000601981	PPP1R13L	Q8WUF5	828 aa		11.19	□□□□□ -0.62
UPF1-213	ENST00000601981	MAP7D2	Q96T17	732 aa		11.19	□□□□□ -0.62
UPF1-213	ENST00000601981	LBHD1	Q9BQE6	289 aa	Predicted RBP	11.19	□□□□□ -0.62
UPF1-213	ENST00000601981	CYP26B1	Q9NR63	512 aa		11.19	□□□□□ -0.62
UPF1-213	ENST00000601981	DBR1	Q9UK59	544 aa	Known RBP	11.19	□□□□□ -0.62
UPF1-213	ENST00000601981	PCDHA2	Q9Y5H9	948 aa		11.19	□□□□□ -0.62
UPF1-213	ENST00000601981	PP2D1	A8MPX8	630 aa		11.18	□□□□□ -0.62
UPF1-213	ENST00000601981	KIAA0355	O15063	1070 aa		11.18	□□□□□ -0.62
UPF1-213	ENST00000601981	DGAT1	O75907	488 aa		11.18	□□□□□ -0.62
UPF1-213	ENST00000601981	SMC2	O95347	1197 aa		11.18	□□□□□ -0.62
UPF1-213	ENST00000601981	CDC25A	P30304	524 aa		11.18	□□□□□ -0.62
UPF1-213	ENST00000601981	ADAM17	P78536	824 aa		11.18	□□□□□ -0.62
UPF1-213	ENST00000601981	ZNF200	P98182	395 aa	Predicted RBP	11.18	□□□□□ -0.62
UPF1-213	ENST00000601981	CDC42EP1	Q00587	391 aa		11.18	□□□□□ -0.62
UPF1-213	ENST00000601981	IQCB1	Q15051	598 aa		11.18	□□□□□ -0.62
UPF1-213	ENST00000601981	HYI	Q5T013	277 aa		11.18	□□□□□ -0.62
UPF1-213	ENST00000601981	IER5	Q5VY09	327 aa		11.18	□□□□□ -0.62
UPF1-213	ENST00000601981	PLA2G4F	Q68DD2	849 aa		11.18	□□□□□ -0.62
UPF1-213	ENST00000601981	NME8	Q8N427	588 aa		11.18	□□□□□ -0.62
UPF1-213	ENST00000601981	TMEM199	Q8N511	208 aa		11.18	□□□□□ -0.62

Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms