RNA–Protein interactions for RNA: ENST00000601341.5

VRK3-223, Transcript of vaccinia related kinase 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene VRK3, Length 1,777 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-223ENST00000601341 HTRA3P83110 453 aa12.9□□□□□ -0.34
VRK3-223ENST00000601341 PSMD2Q13200 908 aa12.9□□□□□ -0.34
VRK3-223ENST00000601341 LAMC2Q13753 1193 aa12.9□□□□□ -0.34
VRK3-223ENST00000601341 ELF2Q15723 593 aa12.9□□□□□ -0.34
VRK3-223ENST00000601341 TCP11X2Q5H9J9 407 aa12.9□□□□□ -0.34
VRK3-223ENST00000601341 IQSEC1Q6DN90 963 aa12.9□□□□□ -0.34
VRK3-223ENST00000601341 KLHL10Q6JEL2 608 aa12.9□□□□□ -0.34
VRK3-223ENST00000601341 RINT1Q6NUQ1 792 aa12.9□□□□□ -0.34
VRK3-223ENST00000601341 CCDC60Q8IWA6 550 aaPredicted RBP12.9□□□□□ -0.34
VRK3-223ENST00000601341 MNS1Q8NEH6 495 aa12.9□□□□□ -0.34
VRK3-223ENST00000601341 UBXN4Q92575 508 aa12.9□□□□□ -0.34
VRK3-223ENST00000601341 CCDC43Q96MW1 224 aaKnown RBP12.9□□□□□ -0.34
VRK3-223ENST00000601341 SPATA33Q96N06 139 aa12.9□□□□□ -0.34
VRK3-223ENST00000601341 ZNF302Q9NR11 478 aa12.9□□□□□ -0.34
VRK3-223ENST00000601341 ANKEF1Q9NU02 776 aa12.9□□□□□ -0.34
VRK3-223ENST00000601341 PANK4Q9NVE7 773 aa12.9□□□□□ -0.34
VRK3-223ENST00000601341 TELO2Q9Y4R8 837 aa12.9□□□□□ -0.34
VRK3-223ENST00000601341 KIAA1217Q5T5P2 1943 aa12.9□□□□□ -0.34
VRK3-223ENST00000601341 IGKV6D-21A0A0A0MT36 114 aa12.89□□□□□ -0.35
VRK3-223ENST00000601341 GSTTP1A0A1W2PQM5 241 aa12.89□□□□□ -0.35
VRK3-223ENST00000601341 NKRFO15226 690 aaKnown RBP eCLIP12.89□□□□□ -0.35
VRK3-223ENST00000601341 TADA3O75528 432 aa12.89□□□□□ -0.35
VRK3-223ENST00000601341 GH1P01241 217 aa12.89□□□□□ -0.35
VRK3-223ENST00000601341 ADCYAP1R1P41586 468 aa12.89□□□□□ -0.35
VRK3-223ENST00000601341 GABPB1Q06547 395 aaPredicted RBP12.89□□□□□ -0.35
VRK3-223ENST00000601341 GIT2Q14161 759 aa12.89□□□□□ -0.35
VRK3-223ENST00000601341 KRT31Q15323 416 aa12.89□□□□□ -0.35
VRK3-223ENST00000601341 HSDL1Q3SXM5 330 aa12.89□□□□□ -0.35
VRK3-223ENST00000601341 XKR3Q5GH77 459 aa12.89□□□□□ -0.35
VRK3-223ENST00000601341 FAM160B1Q5W0V3 765 aa12.89□□□□□ -0.35
VRK3-223ENST00000601341 FBXO38Q6PIJ6 1188 aa12.89□□□□□ -0.35
VRK3-223ENST00000601341 C1orf186Q6ZWK4 172 aa12.89□□□□□ -0.35
VRK3-223ENST00000601341 CREBRFQ8IUR6 639 aa12.89□□□□□ -0.35
VRK3-223ENST00000601341 ADSSL1Q8N142 457 aa12.89□□□□□ -0.35
VRK3-223ENST00000601341 IQCDQ96DY2 449 aa12.89□□□□□ -0.35
VRK3-223ENST00000601341 DHTKD1Q96HY7 919 aaPredicted RBP12.89□□□□□ -0.35
VRK3-223ENST00000601341 GPR20Q99678 358 aa12.89□□□□□ -0.35
VRK3-223ENST00000601341 RUSC1Q9BVN2 902 aa12.89□□□□□ -0.35
VRK3-223ENST00000601341 ARHGAP39Q9C0H5 1083 aa12.89□□□□□ -0.35
VRK3-223ENST00000601341 THAP9Q9H5L6 903 aa12.89□□□□□ -0.35
VRK3-223ENST00000601341 AZI2Q9H6S1 392 aa12.89□□□□□ -0.35
VRK3-223ENST00000601341 ZHX1Q9UKY1 873 aaPredicted RBP12.89□□□□□ -0.35
VRK3-223ENST00000601341 CTNND2Q9UQB3 1225 aa12.89□□□□□ -0.35
VRK3-223ENST00000601341 MAFBQ9Y5Q3 323 aaPredicted RBP12.89□□□□□ -0.35
VRK3-223ENST00000601341 ADGRG1Q9Y653 693 aa12.89□□□□□ -0.35
VRK3-223ENST00000601341 IGSF9BQ9UPX0 1349 aa12.89□□□□□ -0.35
VRK3-223ENST00000601341 NPHP3-ACAD11A0A0J9YXS1 232 aa12.89□□□□□ -0.35
VRK3-223ENST00000601341 TEX33O43247 280 aa12.89□□□□□ -0.35
VRK3-223ENST00000601341 ZNF862O60290 1169 aa12.89□□□□□ -0.35
VRK3-223ENST00000601341 TCF7P36402 384 aaPredicted RBP12.89□□□□□ -0.35
VRK3-223ENST00000601341 RARRES1P49788 294 aa12.89□□□□□ -0.35
VRK3-223ENST00000601341 RBL2Q08999 1139 aa12.89□□□□□ -0.35
VRK3-223ENST00000601341 RAD51AP2Q09MP3 1159 aa12.89□□□□□ -0.35
VRK3-223ENST00000601341 DUSP28Q4G0W2 176 aa12.89□□□□□ -0.35
VRK3-223ENST00000601341 KRT222Q8N1A0 295 aa12.89□□□□□ -0.35
VRK3-223ENST00000601341 NELFBQ8WX92 580 aa12.89□□□□□ -0.35
VRK3-223ENST00000601341 EMID1Q96A84 441 aaPredicted RBP12.89□□□□□ -0.35
VRK3-223ENST00000601341 REEP2Q9BRK0 252 aa12.89□□□□□ -0.35
VRK3-223ENST00000601341 FLRT1Q9NZU1 646 aa12.89□□□□□ -0.35
VRK3-223ENST00000601341 MRFAP1Q9Y605 127 aa12.89□□□□□ -0.35
VRK3-223ENST00000601341 PLXNA1Q9UIW2 1896 aa12.89□□□□□ -0.35
VRK3-223ENST00000601341 FRMD3A2A2Y4 597 aa12.88□□□□□ -0.35
VRK3-223ENST00000601341 KCNJ18B7U540 433 aa12.88□□□□□ -0.35
VRK3-223ENST00000601341 PSMA7O14818 248 aa12.88□□□□□ -0.35
VRK3-223ENST00000601341 N4BP3O15049 544 aa12.88□□□□□ -0.35
VRK3-223ENST00000601341 TBCAO75347 108 aaKnown RBP12.88□□□□□ -0.35
VRK3-223ENST00000601341 URI1O94763 535 aaPredicted RBP12.88□□□□□ -0.35
VRK3-223ENST00000601341 GYPCP04921 128 aa12.88□□□□□ -0.35
VRK3-223ENST00000601341 ZSCAN20P17040 1043 aaPredicted RBP12.88□□□□□ -0.35
VRK3-223ENST00000601341 GUCY2CP25092 1073 aa12.88□□□□□ -0.35
VRK3-223ENST00000601341 STAT5BP51692 787 aa12.88□□□□□ -0.35
VRK3-223ENST00000601341 COPB1P53618 953 aaKnown RBP12.88□□□□□ -0.35
VRK3-223ENST00000601341 GNG11P61952 73 aa12.88□□□□□ -0.35
VRK3-223ENST00000601341 PRKCEQ02156 737 aa12.88□□□□□ -0.35
VRK3-223ENST00000601341 ARHGAP1Q07960 439 aa12.88□□□□□ -0.35
VRK3-223ENST00000601341 EHHADHQ08426 723 aa12.88□□□□□ -0.35
VRK3-223ENST00000601341 STK4Q13043 487 aa12.88□□□□□ -0.35
VRK3-223ENST00000601341 COASYQ13057 564 aa12.88□□□□□ -0.35
VRK3-223ENST00000601341 KCNJ12Q14500 433 aa12.88□□□□□ -0.35
VRK3-223ENST00000601341 BMS1Q14692 1282 aaKnown RBP12.88□□□□□ -0.35
VRK3-223ENST00000601341 NAA30Q147X3 362 aaPredicted RBP12.88□□□□□ -0.35
VRK3-223ENST00000601341 CCL14Q16627 93 aa12.88□□□□□ -0.35
VRK3-223ENST00000601341 XKR9Q5GH70 373 aa12.88□□□□□ -0.35
VRK3-223ENST00000601341 HERC4Q5GLZ8 1057 aaPredicted RBP12.88□□□□□ -0.35
VRK3-223ENST00000601341 TMEM63BQ5T3F8 832 aa12.88□□□□□ -0.35
VRK3-223ENST00000601341 FOXR2Q6PJQ5 311 aa12.88□□□□□ -0.35
VRK3-223ENST00000601341 PADI6Q6TGC4 694 aa12.88□□□□□ -0.35
VRK3-223ENST00000601341 TOGARAM2Q6ZUX3 1019 aa12.88□□□□□ -0.35
VRK3-223ENST00000601341 ANO5Q75V66 913 aa12.88□□□□□ -0.35
VRK3-223ENST00000601341 SMYD4Q8IYR2 804 aaPredicted RBP12.88□□□□□ -0.35
VRK3-223ENST00000601341 GPR161Q8N6U8 529 aaKnown RBP12.88□□□□□ -0.35
VRK3-223ENST00000601341 RETREG2Q8NC44 543 aa12.88□□□□□ -0.35
VRK3-223ENST00000601341 AFAP1L1Q8TED9 768 aa12.88□□□□□ -0.35
VRK3-223ENST00000601341 COPS5Q92905 334 aa12.88□□□□□ -0.35
VRK3-223ENST00000601341 ODF2LQ9ULJ1 636 aa12.88□□□□□ -0.35
VRK3-223ENST00000601341 GDAQ9Y2T3 454 aa12.88□□□□□ -0.35
VRK3-223ENST00000601341 COL4A3BPQ9Y5P4 624 aa12.88□□□□□ -0.35
VRK3-223ENST00000601341 BICDL2A1A5D9 508 aa12.87□□□□□ -0.35
VRK3-223ENST00000601341 IGHA2P01877 340 aa12.87□□□□□ -0.35
VRK3-223ENST00000601341 GAP43P17677 238 aa12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms