RNA–Protein interactions for RNA: ENST00000598020.3

PNKP-211, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 3

Gene PNKP, Length 534 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-211ENST00000598020 METTL13Q8N6R0 699 aa22.68■■□□□ 1.22
PNKP-211ENST00000598020 KCNG4Q8TDN1 519 aa22.68■■□□□ 1.22
PNKP-211ENST00000598020 SLC7A3Q8WY07 619 aa22.68■■□□□ 1.22
PNKP-211ENST00000598020 VWCEQ96DN2 955 aa22.68■■□□□ 1.22
PNKP-211ENST00000598020 CCSER1Q9C0I3 900 aa22.68■■□□□ 1.22
PNKP-211ENST00000598020 NT5C3AQ9H0P0 336 aa22.68■■□□□ 1.22
PNKP-211ENST00000598020 FAM49AQ9H0Q0 323 aaPredicted RBP22.68■■□□□ 1.22
PNKP-211ENST00000598020 CSRNP2Q9H175 543 aa22.68■■□□□ 1.22
PNKP-211ENST00000598020 IL23AQ9NPF7 189 aa22.68■■□□□ 1.22
PNKP-211ENST00000598020 SCN5AQ14524 2016 aa22.67■■□□□ 1.22
PNKP-211ENST00000598020 LOXHD1Q8IVV2 1947 aa22.67■■□□□ 1.22
PNKP-211ENST00000598020 GAS2O43903 313 aaKnown RBP22.67■■□□□ 1.22
PNKP-211ENST00000598020 DGAT1O75907 488 aa22.67■■□□□ 1.22
PNKP-211ENST00000598020 CHRNA1P02708 482 aa22.67■■□□□ 1.22
PNKP-211ENST00000598020 CXCL10P02778 98 aa22.67■■□□□ 1.22
PNKP-211ENST00000598020 MKRN4PQ13434 485 aaPredicted RBP22.67■■□□□ 1.22
PNKP-211ENST00000598020 MBTPS1Q14703 1052 aa22.67■■□□□ 1.22
PNKP-211ENST00000598020 FOXD4L6Q3SYB3 417 aaPredicted RBP22.67■■□□□ 1.22
PNKP-211ENST00000598020 FOXD4L3Q6VB84 417 aaPredicted RBP22.67■■□□□ 1.22
PNKP-211ENST00000598020 CABP7Q86V35 215 aa22.67■■□□□ 1.22
PNKP-211ENST00000598020 PNMA5Q96PV4 448 aa22.67■■□□□ 1.22
PNKP-211ENST00000598020 DDX19AQ9NUU7 478 aaKnown RBP22.67■■□□□ 1.22
PNKP-211ENST00000598020 A0A087WWV3 80 aa22.66■■□□□ 1.22
PNKP-211ENST00000598020 DNM2P50570 870 aa22.66■■□□□ 1.22
PNKP-211ENST00000598020 CLCN3P51790 818 aa22.66■■□□□ 1.22
PNKP-211ENST00000598020 POLGP54098 1239 aaPredicted RBP22.66■■□□□ 1.22
PNKP-211ENST00000598020 KRT85P78386 507 aa22.66■■□□□ 1.22
PNKP-211ENST00000598020 GRB10Q13322 594 aa22.66■■□□□ 1.22
PNKP-211ENST00000598020 TMEM119Q4V9L6 283 aa22.66■■□□□ 1.22
PNKP-211ENST00000598020 C16orf59Q7L2K0 433 aa22.66■■□□□ 1.22
PNKP-211ENST00000598020 LRRC71Q8N4P6 559 aa22.66■■□□□ 1.22
PNKP-211ENST00000598020 CLIC6Q96NY7 704 aa22.66■■□□□ 1.22
PNKP-211ENST00000598020 MAP7D2Q96T17 732 aa22.66■■□□□ 1.22
PNKP-211ENST00000598020 SUGCTQ9HAC7 445 aa22.66■■□□□ 1.22
PNKP-211ENST00000598020 DNM3Q9UQ16 869 aa22.66■■□□□ 1.22
PNKP-211ENST00000598020 SQORQ9Y6N5 450 aa22.66■■□□□ 1.22
PNKP-211ENST00000598020 TCHHQ07283 1943 aa22.66■■□□□ 1.22
PNKP-211ENST00000598020 TET1Q8NFU7 2136 aa22.66■■□□□ 1.22
PNKP-211ENST00000598020 NBNO60934 754 aa22.65■■□□□ 1.22
PNKP-211ENST00000598020 EYA4O95677 639 aa22.65■■□□□ 1.22
PNKP-211ENST00000598020 CTSHP09668 335 aa22.65■■□□□ 1.22
PNKP-211ENST00000598020 EPHB4P54760 987 aa22.65■■□□□ 1.22
PNKP-211ENST00000598020 CDC42EP1Q00587 391 aa22.65■■□□□ 1.22
PNKP-211ENST00000598020 CALML4Q96GE6 196 aa22.65■■□□□ 1.22
PNKP-211ENST00000598020 CCDC43Q96MW1 224 aaKnown RBP22.65■■□□□ 1.22
PNKP-211ENST00000598020 CELF4Q9BZC1 486 aaKnown RBP22.65■■□□□ 1.22
PNKP-211ENST00000598020 UBE2OQ9C0C9 1292 aaKnown RBP22.65■■□□□ 1.22
PNKP-211ENST00000598020 TRPV2Q9Y5S1 764 aa22.65■■□□□ 1.22
PNKP-211ENST00000598020 CDY2AQ9Y6F7 541 aa22.65■■□□□ 1.22
PNKP-211ENST00000598020 M0QZ92 97 aa22.64■■□□□ 1.21
PNKP-211ENST00000598020 CUTAO60888 179 aa22.64■■□□□ 1.21
PNKP-211ENST00000598020 EMC2Q15006 297 aa22.64■■□□□ 1.21
PNKP-211ENST00000598020 PSRC1Q6PGN9 363 aaPredicted RBP22.64■■□□□ 1.21
PNKP-211ENST00000598020 CHRDL2Q6WN34 429 aa22.64■■□□□ 1.21
PNKP-211ENST00000598020 TCP11Q8WWU5 503 aa22.64■■□□□ 1.21
PNKP-211ENST00000598020 EPSTI1Q96J88 318 aa22.64■■□□□ 1.21
PNKP-211ENST00000598020 CDK5RAP3Q96JB5 506 aa22.64■■□□□ 1.21
PNKP-211ENST00000598020 ATP6V0A4Q9HBG4 840 aa22.64■■□□□ 1.21
PNKP-211ENST00000598020 XPNPEP1Q9NQW7 623 aa22.64■■□□□ 1.21
PNKP-211ENST00000598020 SIP14410 1827 aa22.64■■□□□ 1.21
PNKP-211ENST00000598020 ARHGEF35A5YM69 484 aa22.63■■□□□ 1.21
PNKP-211ENST00000598020 GPR32O75388 356 aa22.63■■□□□ 1.21
PNKP-211ENST00000598020 DRP2Q13474 957 aa22.63■■□□□ 1.21
PNKP-211ENST00000598020 AXDND1Q5T1B0 1012 aaPredicted RBP22.63■■□□□ 1.21
PNKP-211ENST00000598020 USP49Q70CQ1 688 aa22.63■■□□□ 1.21
PNKP-211ENST00000598020 KCNK18Q7Z418 384 aa22.63■■□□□ 1.21
PNKP-211ENST00000598020 USP38Q8NB14 1042 aa22.63■■□□□ 1.21
PNKP-211ENST00000598020 SYMPKQ92797 1274 aaKnown RBP22.63■■□□□ 1.21
PNKP-211ENST00000598020 MTRQ99707 1265 aa22.63■■□□□ 1.21
PNKP-211ENST00000598020 SCAND2PQ9GZW5 306 aaPredicted RBP22.63■■□□□ 1.21
PNKP-211ENST00000598020 BHMT2Q9H2M3 363 aa22.63■■□□□ 1.21
PNKP-211ENST00000598020 AKT3Q9Y243 479 aa22.63■■□□□ 1.21
PNKP-211ENST00000598020 A0A1W2PPC1 479 aa22.62■■□□□ 1.21
PNKP-211ENST00000598020 E9PMD0 336 aa22.62■■□□□ 1.21
PNKP-211ENST00000598020 VTNP04004 478 aa22.62■■□□□ 1.21
PNKP-211ENST00000598020 CYP11B2P19099 503 aa22.62■■□□□ 1.21
PNKP-211ENST00000598020 CRYBB1P53674 252 aaPredicted RBP22.62■■□□□ 1.21
PNKP-211ENST00000598020 TMEM62Q0P6H9 643 aa22.62■■□□□ 1.21
PNKP-211ENST00000598020 SPECC1Q5M775 1068 aa22.62■■□□□ 1.21
PNKP-211ENST00000598020 FBXO47Q5MNV8 452 aa22.62■■□□□ 1.21
PNKP-211ENST00000598020 TMEM240Q5SV17 173 aa22.62■■□□□ 1.21
PNKP-211ENST00000598020 PADI6Q6TGC4 694 aa22.62■■□□□ 1.21
PNKP-211ENST00000598020 FAM43BQ6ZT52 329 aaPredicted RBP22.62■■□□□ 1.21
PNKP-211ENST00000598020 DEFB128Q7Z7B8 93 aa22.62■■□□□ 1.21
PNKP-211ENST00000598020 MCPH1Q8NEM0 835 aa22.62■■□□□ 1.21
PNKP-211ENST00000598020 LEO1Q8WVC0 666 aaPredicted RBP22.62■■□□□ 1.21
PNKP-211ENST00000598020 ADAMTS10Q9H324 1103 aa22.62■■□□□ 1.21
PNKP-211ENST00000598020 SUCLA2Q9P2R7 463 aaPredicted RBP22.62■■□□□ 1.21
PNKP-211ENST00000598020 PCDHA7Q9UN72 937 aa22.62■■□□□ 1.21
PNKP-211ENST00000598020 ASAP2O43150 1006 aa22.61■■□□□ 1.21
PNKP-211ENST00000598020 ACRP10323 421 aa22.61■■□□□ 1.21
PNKP-211ENST00000598020 TXLNAP40222 546 aa22.61■■□□□ 1.21
PNKP-211ENST00000598020 GPC3P51654 580 aa22.61■■□□□ 1.21
PNKP-211ENST00000598020 KARSQ15046 597 aaKnown RBP22.61■■□□□ 1.21
PNKP-211ENST00000598020 ZRSR1Q15695 479 aaKnown RBP22.61■■□□□ 1.21
PNKP-211ENST00000598020 PLEKHG4Q58EX7 1191 aa22.61■■□□□ 1.21
PNKP-211ENST00000598020 ZNF365Q70YC5 407 aa22.61■■□□□ 1.21
PNKP-211ENST00000598020 SPATA32Q96LK8 384 aa22.61■■□□□ 1.21
PNKP-211ENST00000598020 BUD13Q9BRD0 619 aaKnown RBP eCLIP22.61■■□□□ 1.217e-9■■■■■ 42.7
PNKP-211ENST00000598020 CCDC39Q9UFE4 941 aa22.61■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms