RNA–Protein interactions for RNA: ENST00000595028.1

TRIM28-205, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 486 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-205ENST00000595028 NLRC5Q86WI3 1866 aa16.99■□□□□ 0.31
TRIM28-205ENST00000595028 EML1O00423 815 aa16.98■□□□□ 0.31
TRIM28-205ENST00000595028 CLCN3P51790 818 aa16.98■□□□□ 0.31
TRIM28-205ENST00000595028 HTRA4P83105 476 aaPredicted RBP16.98■□□□□ 0.31
TRIM28-205ENST00000595028 PAK2Q13177 524 aa16.98■□□□□ 0.31
TRIM28-205ENST00000595028 XKR3Q5GH77 459 aa16.98■□□□□ 0.31
TRIM28-205ENST00000595028 SPRED2Q7Z698 418 aa16.98■□□□□ 0.31
TRIM28-205ENST00000595028 SLFN12Q8IYM2 578 aa16.98■□□□□ 0.31
TRIM28-205ENST00000595028 METTL13Q8N6R0 699 aa16.98■□□□□ 0.31
TRIM28-205ENST00000595028 LINC01465Q8N7H1 131 aa16.98■□□□□ 0.31
TRIM28-205ENST00000595028 BANK1Q8NDB2 785 aa16.98■□□□□ 0.31
TRIM28-205ENST00000595028 LINC01599Q8WXQ3 324 aa16.98■□□□□ 0.31
TRIM28-205ENST00000595028 SNX27Q96L92 541 aa16.98■□□□□ 0.31
TRIM28-205ENST00000595028 RALGAPA2Q2PPJ7 1873 aa16.97■□□□□ 0.31
TRIM28-205ENST00000595028 LINC01553A4QN01 128 aa16.97■□□□□ 0.31
TRIM28-205ENST00000595028 WNT7AO00755 349 aa16.97■□□□□ 0.31
TRIM28-205ENST00000595028 MARCH6O60337 910 aa16.97■□□□□ 0.31
TRIM28-205ENST00000595028 STBD1O95210 358 aa16.97■□□□□ 0.31
TRIM28-205ENST00000595028 PSMC5P62195 406 aa16.97■□□□□ 0.31
TRIM28-205ENST00000595028 SPIRE1Q08AE8 756 aa16.97■□□□□ 0.31
TRIM28-205ENST00000595028 TARBP2Q15633 366 aaKnown RBP16.97■□□□□ 0.31
TRIM28-205ENST00000595028 FAM184AQ8NB25 1140 aa16.97■□□□□ 0.31
TRIM28-205ENST00000595028 FBXO18Q8NFZ0 1043 aa16.97■□□□□ 0.31
TRIM28-205ENST00000595028 SP7Q8TDD2 431 aaPredicted RBP16.97■□□□□ 0.31
TRIM28-205ENST00000595028 TOP1MTQ969P6 601 aa16.97■□□□□ 0.31
TRIM28-205ENST00000595028 MAP7D2Q96T17 732 aa16.97■□□□□ 0.31
TRIM28-205ENST00000595028 CERS4Q9HA82 394 aa16.97■□□□□ 0.31
TRIM28-205ENST00000595028 PADI3Q9ULW8 664 aa16.97■□□□□ 0.31
TRIM28-205ENST00000595028 GINS2Q9Y248 185 aa16.97■□□□□ 0.31
TRIM28-205ENST00000595028 INSL6Q9Y581 213 aa16.97■□□□□ 0.31
TRIM28-205ENST00000595028 MTCH2Q9Y6C9 303 aa16.97■□□□□ 0.31
TRIM28-205ENST00000595028 TMEM150BA6NC51 233 aa16.96■□□□□ 0.31
TRIM28-205ENST00000595028 EPOPA6NHQ4 379 aa16.96■□□□□ 0.31
TRIM28-205ENST00000595028 RFXAPO00287 272 aa16.96■□□□□ 0.31
TRIM28-205ENST00000595028 NEMFO60524 1076 aa16.96■□□□□ 0.31
TRIM28-205ENST00000595028 CD2BP2O95400 341 aaKnown RBP16.96■□□□□ 0.31
TRIM28-205ENST00000595028 VTNP04004 478 aa16.96■□□□□ 0.31
TRIM28-205ENST00000595028 TBC1D8BQ0IIM8 1120 aa16.96■□□□□ 0.31
TRIM28-205ENST00000595028 CALCRLQ16602 461 aa16.96■□□□□ 0.31
TRIM28-205ENST00000595028 MTERF2Q49AM1 385 aa16.96■□□□□ 0.31
TRIM28-205ENST00000595028 LRRC71Q8N4P6 559 aa16.96■□□□□ 0.31
TRIM28-205ENST00000595028 TMEM40Q8WWA1 233 aa16.96■□□□□ 0.31
TRIM28-205ENST00000595028 ARNTL2Q8WYA1 636 aa16.96■□□□□ 0.31
TRIM28-205ENST00000595028 PPP1R16BQ96T49 567 aa16.96■□□□□ 0.31
TRIM28-205ENST00000595028 YME1L1Q96TA2 773 aa16.96■□□□□ 0.31
TRIM28-205ENST00000595028 FTHL17Q9BXU8 183 aa16.96■□□□□ 0.31
TRIM28-205ENST00000595028 NIFKQ9BYG3 293 aaKnown RBP16.96■□□□□ 0.31
TRIM28-205ENST00000595028 COG5Q9UP83 839 aa16.96■□□□□ 0.31
TRIM28-205ENST00000595028 UPP2O95045 317 aa16.95■□□□□ 0.3
TRIM28-205ENST00000595028 BAG4O95429 457 aaKnown RBP16.95■□□□□ 0.3
TRIM28-205ENST00000595028 POU3F3P20264 500 aaPredicted RBP16.95■□□□□ 0.3
TRIM28-205ENST00000595028 TMOD1P28289 359 aa16.95■□□□□ 0.3
TRIM28-205ENST00000595028 QARSP47897 775 aaKnown RBP16.95■□□□□ 0.3
TRIM28-205ENST00000595028 MRE11P49959 708 aa16.95■□□□□ 0.3
TRIM28-205ENST00000595028 KIZQ2M2Z5 673 aa16.95■□□□□ 0.3
TRIM28-205ENST00000595028 TMEM266Q2M3C6 531 aa16.95■□□□□ 0.3
TRIM28-205ENST00000595028 NCAPH2Q6IBW4 605 aa16.95■□□□□ 0.3
TRIM28-205ENST00000595028 EFCAB12Q6NXP0 572 aa16.95■□□□□ 0.3
TRIM28-205ENST00000595028 TGS1Q96RS0 853 aaKnown RBP16.95■□□□□ 0.3
TRIM28-205ENST00000595028 CEP89Q96ST8 783 aa16.95■□□□□ 0.3
TRIM28-205ENST00000595028 OSMRQ99650 979 aa16.95■□□□□ 0.3
TRIM28-205ENST00000595028 LXNQ9BS40 222 aa16.95■□□□□ 0.3
TRIM28-205ENST00000595028 FOXP1Q9H334 677 aaPredicted RBP16.95■□□□□ 0.3
TRIM28-205ENST00000595028 CDHR5Q9HBB8 845 aa16.95■□□□□ 0.3
TRIM28-205ENST00000595028 AKT3Q9Y243 479 aa16.95■□□□□ 0.3
TRIM28-205ENST00000595028 NOC2LQ9Y3T9 749 aaKnown RBP16.95■□□□□ 0.3
TRIM28-205ENST00000595028 PI4K2BG5E9Z4 385 aa16.94■□□□□ 0.3
TRIM28-205ENST00000595028 ENPP3O14638 875 aa16.94■□□□□ 0.3
TRIM28-205ENST00000595028 GTPBP6O43824 516 aaPredicted RBP16.94■□□□□ 0.3
TRIM28-205ENST00000595028 DKC1O60832 514 aaKnown RBP eCLIP16.94■□□□□ 0.3
TRIM28-205ENST00000595028 GPR32O75388 356 aa16.94■□□□□ 0.3
TRIM28-205ENST00000595028 RPS6KA5O75582 802 aa16.94■□□□□ 0.3
TRIM28-205ENST00000595028 P4HBP07237 508 aaKnown RBP16.94■□□□□ 0.3
TRIM28-205ENST00000595028 CRYBB1P53674 252 aaPredicted RBP16.94■□□□□ 0.3
TRIM28-205ENST00000595028 ERVK-21P61565 698 aa16.94■□□□□ 0.3
TRIM28-205ENST00000595028 EPHA7Q15375 998 aa16.94■□□□□ 0.3
TRIM28-205ENST00000595028 PLA2G4FQ68DD2 849 aa16.94■□□□□ 0.3
TRIM28-205ENST00000595028 ANO5Q75V66 913 aa16.94■□□□□ 0.3
TRIM28-205ENST00000595028 TMX3Q96JJ7 454 aa16.94■□□□□ 0.3
TRIM28-205ENST00000595028 TMX1Q9H3N1 280 aa16.94■□□□□ 0.3
TRIM28-205ENST00000595028 SUGCTQ9HAC7 445 aa16.94■□□□□ 0.3
TRIM28-205ENST00000595028 RC3H2Q9HBD1 1191 aaKnown RBP16.94■□□□□ 0.3
TRIM28-205ENST00000595028 ERVK-5Q9HDB9 667 aa16.94■□□□□ 0.3
TRIM28-205ENST00000595028 WRAP73Q9P2S5 460 aaPredicted RBP16.94■□□□□ 0.3
TRIM28-205ENST00000595028 IGKV6-21A0A0C4DH24 114 aa16.93■□□□□ 0.3
TRIM28-205ENST00000595028 DDX11L8A8MPP1 907 aa16.93■□□□□ 0.3
TRIM28-205ENST00000595028 MCM2P49736 904 aa16.93■□□□□ 0.3
TRIM28-205ENST00000595028 ODR4Q5SWX8 454 aa16.93■□□□□ 0.3
TRIM28-205ENST00000595028 FAM43BQ6ZT52 329 aaPredicted RBP16.93■□□□□ 0.3
TRIM28-205ENST00000595028 FAM228AQ86W67 206 aa16.93■□□□□ 0.3
TRIM28-205ENST00000595028 ZNF710Q8N1W2 664 aa16.93■□□□□ 0.3
TRIM28-205ENST00000595028 MTMR9Q96QG7 549 aa16.93■□□□□ 0.3
TRIM28-205ENST00000595028 SH2D3AQ9BRG2 576 aa16.93■□□□□ 0.3
TRIM28-205ENST00000595028 CD320Q9NPF0 282 aa16.93■□□□□ 0.3
TRIM28-205ENST00000595028 MTUS1Q9ULD2 1270 aa16.93■□□□□ 0.3
TRIM28-205ENST00000595028 KIF3AQ9Y496 699 aa16.93■□□□□ 0.3
TRIM28-205ENST00000595028 KIAA1671Q9BY89 1806 aa16.93■□□□□ 0.3
TRIM28-205ENST00000595028 ADGRA3Q8IWK6 1321 aa16.93■□□□□ 0.3
TRIM28-205ENST00000595028 BRWD1Q9NSI6 2320 aa16.92■□□□□ 0.3
TRIM28-205ENST00000595028 LPXNO60711 386 aa16.92■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 49.4 ms