RNA–Protein interactions for RNA: ENST00000591595.5

SMARCA4-217, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

TSL 2

Gene SMARCA4, Length 3,377 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-217ENST00000591595 PFDN4Q9NQP4 134 aa13.23□□□□□ -0.29
SMARCA4-217ENST00000591595 DISC1Q9NRI5 854 aa13.23□□□□□ -0.29
SMARCA4-217ENST00000591595 ATP8A2Q9NTI2 1148 aa13.23□□□□□ -0.29
SMARCA4-217ENST00000591595 PMS1P54277 932 aaKnown RBP13.22□□□□□ -0.29
SMARCA4-217ENST00000591595 SH3BGRP55822 239 aaPredicted RBP13.22□□□□□ -0.29
SMARCA4-217ENST00000591595 OLFML2BQ68BL8 750 aa13.22□□□□□ -0.29
SMARCA4-217ENST00000591595 TRPM8Q7Z2W7 1104 aa13.22□□□□□ -0.29
SMARCA4-217ENST00000591595 KLHL29Q96CT2 875 aa13.22□□□□□ -0.29
SMARCA4-217ENST00000591595 SIKE1Q9BRV8 207 aa13.22□□□□□ -0.29
SMARCA4-217ENST00000591595 BRIP1Q9BX63 1249 aa13.22□□□□□ -0.29
SMARCA4-217ENST00000591595 ARHGEF38Q9NXL2 777 aa13.22□□□□□ -0.29
SMARCA4-217ENST00000591595 MCM9Q9NXL9 1143 aa13.22□□□□□ -0.29
SMARCA4-217ENST00000591595 STIM2Q9P246 746 aa13.22□□□□□ -0.29
SMARCA4-217ENST00000591595 PARP4Q9UKK3 1724 aaKnown RBP13.22□□□□□ -0.29
SMARCA4-217ENST00000591595 LGALS16A8MUM7 142 aa13.22□□□□□ -0.29
SMARCA4-217ENST00000591595 ADAMTS3O15072 1205 aa13.22□□□□□ -0.29
SMARCA4-217ENST00000591595 IDEP14735 1019 aa13.22□□□□□ -0.29
SMARCA4-217ENST00000591595 CRKLP46109 303 aaKnown RBP13.22□□□□□ -0.29
SMARCA4-217ENST00000591595 PDE6CP51160 858 aa13.22□□□□□ -0.29
SMARCA4-217ENST00000591595 CYP27A1Q02318 531 aa13.22□□□□□ -0.29
SMARCA4-217ENST00000591595 KIF2BQ8N4N8 673 aa13.22□□□□□ -0.29
SMARCA4-217ENST00000591595 SREK1Q8WXA9 508 aaKnown RBP13.22□□□□□ -0.29
SMARCA4-217ENST00000591595 DNAJC9Q8WXX5 260 aa13.22□□□□□ -0.29
SMARCA4-217ENST00000591595 LENG1Q96BZ8 264 aaPredicted RBP13.22□□□□□ -0.29
SMARCA4-217ENST00000591595 REXO2Q9Y3B8 237 aaKnown RBP13.22□□□□□ -0.29
SMARCA4-217ENST00000591595 E7ENQ6 273 aa13.21□□□□□ -0.29
SMARCA4-217ENST00000591595 PAEPP09466 180 aa13.21□□□□□ -0.29
SMARCA4-217ENST00000591595 CACNA2D1P54289 1103 aa13.21□□□□□ -0.29
SMARCA4-217ENST00000591595 SF3A3Q12874 501 aaKnown RBP eCLIP13.21□□□□□ -0.293e-6■■■■■ 27.6
SMARCA4-217ENST00000591595 PFKFB3Q16875 520 aaPredicted RBP13.21□□□□□ -0.29
SMARCA4-217ENST00000591595 SCUBE1Q8IWY4 988 aa13.21□□□□□ -0.29
SMARCA4-217ENST00000591595 AGBL1Q96MI9 1066 aa13.21□□□□□ -0.29
SMARCA4-217ENST00000591595 HAPLN3Q96S86 360 aa13.21□□□□□ -0.29
SMARCA4-217ENST00000591595 AGPAT5Q9NUQ2 364 aa13.21□□□□□ -0.29
SMARCA4-217ENST00000591595 AFF2P51816 1311 aa13.21□□□□□ -0.29
SMARCA4-217ENST00000591595 ORC4O43929 436 aa13.21□□□□□ -0.29
SMARCA4-217ENST00000591595 ITGA2BP08514 1039 aa13.21□□□□□ -0.29
SMARCA4-217ENST00000591595 VDRP11473 427 aa13.21□□□□□ -0.29
SMARCA4-217ENST00000591595 MATR3P43243 847 aaKnown RBP eCLIP13.21□□□□□ -0.291e-6■■■■■ 30.1
SMARCA4-217ENST00000591595 USP11P51784 963 aa13.21□□□□□ -0.29
SMARCA4-217ENST00000591595 SPA17Q15506 151 aa13.21□□□□□ -0.29
SMARCA4-217ENST00000591595 ODF2Q5BJF6 829 aa13.21□□□□□ -0.29
SMARCA4-217ENST00000591595 ZNF362Q5T0B9 420 aaPredicted RBP13.21□□□□□ -0.29
SMARCA4-217ENST00000591595 ADSSL1Q8N142 457 aa13.21□□□□□ -0.29
SMARCA4-217ENST00000591595 CHMP6Q96FZ7 201 aa13.21□□□□□ -0.29
SMARCA4-217ENST00000591595 TUBGCP2Q9BSJ2 902 aa13.21□□□□□ -0.29
SMARCA4-217ENST00000591595 ECT2Q9H8V3 914 aa13.21□□□□□ -0.29
SMARCA4-217ENST00000591595 TFCP2L1Q9NZI6 479 aa13.21□□□□□ -0.29
SMARCA4-217ENST00000591595 HSFX1Q9UBD0 423 aa13.21□□□□□ -0.29
SMARCA4-217ENST00000591595 NKX1-2Q9UD57 310 aaPredicted RBP13.21□□□□□ -0.29
SMARCA4-217ENST00000591595 COMMD3-BMI1R4GMX3 469 aa13.21□□□□□ -0.29
SMARCA4-217ENST00000591595 UBR2Q8IWV8 1755 aa13.21□□□□□ -0.3
SMARCA4-217ENST00000591595 KCNA3P22001 575 aa13.21□□□□□ -0.3
SMARCA4-217ENST00000591595 ASIC1P78348 528 aa13.21□□□□□ -0.3
SMARCA4-217ENST00000591595 ITIH4Q14624 930 aa13.21□□□□□ -0.3
SMARCA4-217ENST00000591595 TBC1D9BQ66K14 1250 aa13.21□□□□□ -0.3
SMARCA4-217ENST00000591595 WDR75Q8IWA0 830 aaKnown RBP13.21□□□□□ -0.3
SMARCA4-217ENST00000591595 FAM136AQ96C01 138 aa13.21□□□□□ -0.3
SMARCA4-217ENST00000591595 NLRP3Q96P20 1036 aa13.21□□□□□ -0.3
SMARCA4-217ENST00000591595 SPATA16Q9BXB7 569 aa13.21□□□□□ -0.3
SMARCA4-217ENST00000591595 STX8Q9UNK0 236 aa13.21□□□□□ -0.3
SMARCA4-217ENST00000591595 ASLP04424 464 aa13.2□□□□□ -0.3
SMARCA4-217ENST00000591595 EEF1GP26641 437 aaKnown RBP13.2□□□□□ -0.3
SMARCA4-217ENST00000591595 DNM2P50570 870 aa13.2□□□□□ -0.3
SMARCA4-217ENST00000591595 PDE4DQ08499 809 aa13.2□□□□□ -0.3
SMARCA4-217ENST00000591595 ARL6IP4Q66PJ3 421 aaKnown RBP13.2□□□□□ -0.3
SMARCA4-217ENST00000591595 SLC2A7Q6PXP3 512 aa13.2□□□□□ -0.3
SMARCA4-217ENST00000591595 DAAM2Q86T65 1068 aa13.2□□□□□ -0.3
SMARCA4-217ENST00000591595 MAP7D3Q8IWC1 876 aa13.2□□□□□ -0.3
SMARCA4-217ENST00000591595 SERBP1Q8NC51 408 aaKnown RBP eCLIP13.2□□□□□ -0.3
SMARCA4-217ENST00000591595 DDX12PQ92771 950 aa13.2□□□□□ -0.3
SMARCA4-217ENST00000591595 MKNK2Q9HBH9 465 aa13.2□□□□□ -0.3
SMARCA4-217ENST00000591595 TMBIM4Q9HC24 238 aa13.2□□□□□ -0.3
SMARCA4-217ENST00000591595 TCP11L1Q9NUJ3 509 aa13.2□□□□□ -0.3
SMARCA4-217ENST00000591595 WFS1O76024 890 aa13.2□□□□□ -0.3
SMARCA4-217ENST00000591595 RARAP10276 462 aa13.2□□□□□ -0.3
SMARCA4-217ENST00000591595 GPSM2P81274 684 aa13.2□□□□□ -0.3
SMARCA4-217ENST00000591595 TFAP4Q01664 338 aa13.2□□□□□ -0.3
SMARCA4-217ENST00000591595 IRF2BP1Q8IU81 584 aa13.2□□□□□ -0.3
SMARCA4-217ENST00000591595 RNF10Q8N5U6 811 aaKnown RBP13.2□□□□□ -0.3
SMARCA4-217ENST00000591595 CCDC42Q96M95 316 aa13.2□□□□□ -0.3
SMARCA4-217ENST00000591595 CATSPER2Q96P56 530 aa13.2□□□□□ -0.3
SMARCA4-217ENST00000591595 SH3GL1Q99961 368 aa13.2□□□□□ -0.3
SMARCA4-217ENST00000591595 DCP1AQ9NPI6 582 aaPredicted RBP13.2□□□□□ -0.3
SMARCA4-217ENST00000591595 EXOC1Q9NV70 894 aa13.2□□□□□ -0.3
SMARCA4-217ENST00000591595 HESX1Q9UBX0 185 aa13.2□□□□□ -0.3
SMARCA4-217ENST00000591595 ZNF148Q9UQR1 794 aa13.2□□□□□ -0.3
SMARCA4-217ENST00000591595 ZNF711Q9Y462 761 aa13.2□□□□□ -0.3
SMARCA4-217ENST00000591595 TIMM22Q9Y584 194 aa13.2□□□□□ -0.3
SMARCA4-217ENST00000591595 FAM205AQ6ZU69 1335 aa13.2□□□□□ -0.3
SMARCA4-217ENST00000591595 LRP6O75581 1613 aa13.2□□□□□ -0.3
SMARCA4-217ENST00000591595 GCOM1H8Y6P7 765 aaPredicted RBP13.2□□□□□ -0.3
SMARCA4-217ENST00000591595 MYZAPP0CAP1 466 aa13.2□□□□□ -0.3
SMARCA4-217ENST00000591595 PYGMP11217 842 aa13.2□□□□□ -0.3
SMARCA4-217ENST00000591595 CALB2P22676 271 aa13.2□□□□□ -0.3
SMARCA4-217ENST00000591595 FECHP22830 423 aa13.2□□□□□ -0.3
SMARCA4-217ENST00000591595 KLK7P49862 253 aa13.2□□□□□ -0.3
SMARCA4-217ENST00000591595 HAUS1Q96CS2 278 aa13.2□□□□□ -0.3
SMARCA4-217ENST00000591595 SMC6Q96SB8 1091 aa13.2□□□□□ -0.3
SMARCA4-217ENST00000591595 PSMB7Q99436 277 aa13.2□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 10.2 ms