RNA–Protein interactions for RNA: ENST00000588323.1

VPS4B-203, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 3

Gene VPS4B, Length 463 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-203ENST00000588323 TMEM132BQ14DG7 1078 aa5.06□□□□□ -1.6
VPS4B-203ENST00000588323 TM4SF20Q53R12 229 aa5.06□□□□□ -1.6
VPS4B-203ENST00000588323 FNDC7Q5VTL7 733 aa5.06□□□□□ -1.6
VPS4B-203ENST00000588323 NBPF6Q5VWK0 638 aa5.06□□□□□ -1.6
VPS4B-203ENST00000588323 MAGEB10Q96LZ2 347 aaPredicted RBP5.06□□□□□ -1.6
VPS4B-203ENST00000588323 NBPF4Q96M43 638 aa5.06□□□□□ -1.6
VPS4B-203ENST00000588323 CELF4Q9BZC1 486 aaKnown RBP5.06□□□□□ -1.6
VPS4B-203ENST00000588323 SLC52A2Q9HAB3 445 aa5.06□□□□□ -1.6
VPS4B-203ENST00000588323 PARPBPQ9NWS1 579 aa5.06□□□□□ -1.6
VPS4B-203ENST00000588323 SIRPGQ9P1W8 387 aa5.06□□□□□ -1.6
VPS4B-203ENST00000588323 REXO2Q9Y3B8 237 aaKnown RBP5.06□□□□□ -1.6
VPS4B-203ENST00000588323 B3GALT1Q9Y5Z6 326 aa5.06□□□□□ -1.6
VPS4B-203ENST00000588323 A0A1W2PRX2 142 aa5.05□□□□□ -1.6
VPS4B-203ENST00000588323 SLC12A8A0AV02 714 aa5.05□□□□□ -1.6
VPS4B-203ENST00000588323 HIP1RO75146 1068 aa5.05□□□□□ -1.6
VPS4B-203ENST00000588323 SDHAP31040 664 aa5.05□□□□□ -1.6
VPS4B-203ENST00000588323 RIN1Q13671 783 aa5.05□□□□□ -1.6
VPS4B-203ENST00000588323 ZC3H12BQ5HYM0 836 aaKnown RBP5.05□□□□□ -1.6
VPS4B-203ENST00000588323 TMPRSS6Q8IU80 811 aa5.05□□□□□ -1.6
VPS4B-203ENST00000588323 LARP4BQ92615 738 aaKnown RBP5.05□□□□□ -1.6
VPS4B-203ENST00000588323 RABGGTAQ92696 567 aa5.05□□□□□ -1.6
VPS4B-203ENST00000588323 LPPQ93052 612 aa5.05□□□□□ -1.6
VPS4B-203ENST00000588323 MPHOSPH9Q99550 1183 aa5.05□□□□□ -1.6
VPS4B-203ENST00000588323 AGO3Q9H9G7 860 aaKnown RBP5.05□□□□□ -1.6
VPS4B-203ENST00000588323 VWA7Q9Y334 891 aa5.05□□□□□ -1.6
VPS4B-203ENST00000588323 LOC101059915A0A1B0GWI6 518 aaPredicted RBP5.04□□□□□ -1.6
VPS4B-203ENST00000588323 KRTAP23-1A1A580 65 aa5.04□□□□□ -1.6
VPS4B-203ENST00000588323 RASSF10A6NK89 507 aa5.04□□□□□ -1.6
VPS4B-203ENST00000588323 GOLGA6L22H0YM25 854 aa5.04□□□□□ -1.6
VPS4B-203ENST00000588323 RASGRP1O95267 797 aa5.04□□□□□ -1.6
VPS4B-203ENST00000588323 SESN2P58004 480 aaPredicted RBP5.04□□□□□ -1.6
VPS4B-203ENST00000588323 ADAM15Q13444 863 aa5.04□□□□□ -1.6
VPS4B-203ENST00000588323 FSTL4Q6MZW2 842 aa5.04□□□□□ -1.6
VPS4B-203ENST00000588323 KLHDC10Q6PID8 442 aa5.04□□□□□ -1.6
VPS4B-203ENST00000588323 ANKRD35Q8N283 1001 aa5.04□□□□□ -1.6
VPS4B-203ENST00000588323 DLG3Q92796 817 aa5.04□□□□□ -1.6
VPS4B-203ENST00000588323 ERCC4Q92889 916 aaPredicted RBP5.04□□□□□ -1.6
VPS4B-203ENST00000588323 CEP72Q9P209 647 aa5.04□□□□□ -1.6
VPS4B-203ENST00000588323 H2AFYO75367 372 aaKnown RBP5.03□□□□□ -1.6
VPS4B-203ENST00000588323 MAFO75444 373 aaPredicted RBP5.03□□□□□ -1.6
VPS4B-203ENST00000588323 ATP2B1P20020 1258 aa5.03□□□□□ -1.6
VPS4B-203ENST00000588323 RBM25P49756 843 aaKnown RBP5.03□□□□□ -1.6
VPS4B-203ENST00000588323 ZC3H6P61129 1189 aaKnown RBP5.03□□□□□ -1.6
VPS4B-203ENST00000588323 ATP2C1P98194 919 aaPredicted RBP5.03□□□□□ -1.6
VPS4B-203ENST00000588323 RRP1BQ14684 758 aaKnown RBP5.03□□□□□ -1.6
VPS4B-203ENST00000588323 CATSPEREQ5SY80 951 aa5.03□□□□□ -1.6
VPS4B-203ENST00000588323 SPTY2D1Q68D10 685 aaPredicted RBP5.03□□□□□ -1.6
VPS4B-203ENST00000588323 OVCH1Q7RTY7 1134 aa5.03□□□□□ -1.6
VPS4B-203ENST00000588323 MRGPRGQ86SM5 289 aa5.03□□□□□ -1.6
VPS4B-203ENST00000588323 LDLRAD3Q86YD5 345 aa5.03□□□□□ -1.6
VPS4B-203ENST00000588323 GSTCDQ8NEC7 633 aa5.03□□□□□ -1.6
VPS4B-203ENST00000588323 SLC7A6OSQ96CW6 309 aaPredicted RBP5.03□□□□□ -1.6
VPS4B-203ENST00000588323 CLIP3Q96DZ5 547 aa5.03□□□□□ -1.6
VPS4B-203ENST00000588323 SAE1Q9UBE0 346 aaPredicted RBP5.03□□□□□ -1.6
VPS4B-203ENST00000588323 HECAQ9UBI9 543 aaPredicted RBP5.03□□□□□ -1.6
VPS4B-203ENST00000588323 SFMBT1Q9UHJ3 866 aa5.03□□□□□ -1.6
VPS4B-203ENST00000588323 SH3BP1Q9Y3L3 701 aa5.03□□□□□ -1.6
VPS4B-203ENST00000588323 CTDP1Q9Y5B0 961 aaPredicted RBP5.03□□□□□ -1.6
VPS4B-203ENST00000588323 NPTXRO95502 500 aa5.02□□□□□ -1.61
VPS4B-203ENST00000588323 PEX11BO96011 259 aa5.02□□□□□ -1.61
VPS4B-203ENST00000588323 STAT3P40763 770 aa5.02□□□□□ -1.61
VPS4B-203ENST00000588323 IRF9Q00978 393 aa5.02□□□□□ -1.61
VPS4B-203ENST00000588323 ALDH6A1Q02252 535 aaKnown RBP5.02□□□□□ -1.61
VPS4B-203ENST00000588323 CNGB1Q14028 1251 aaPredicted RBP5.02□□□□□ -1.61
VPS4B-203ENST00000588323 SAFB2Q14151 953 aaKnown RBP eCLIP5.02□□□□□ -1.61
VPS4B-203ENST00000588323 NAALADL2Q58DX5 795 aa5.02□□□□□ -1.61
VPS4B-203ENST00000588323 BCL6BQ8N143 479 aaPredicted RBP5.02□□□□□ -1.61
VPS4B-203ENST00000588323 C2orf69Q8N8R5 385 aa5.02□□□□□ -1.61
VPS4B-203ENST00000588323 GCDHQ92947 438 aaPredicted RBP5.02□□□□□ -1.61
VPS4B-203ENST00000588323 GFM2Q969S9 779 aaKnown RBP5.02□□□□□ -1.61
VPS4B-203ENST00000588323 PRRX2Q99811 253 aa5.02□□□□□ -1.61
VPS4B-203ENST00000588323 KRTAP9-8Q9BYQ0 159 aa5.02□□□□□ -1.61
VPS4B-203ENST00000588323 TANGO6Q9C0B7 1094 aa5.02□□□□□ -1.61
VPS4B-203ENST00000588323 SLC6A15Q9H2J7 730 aa5.02□□□□□ -1.61
VPS4B-203ENST00000588323 SLC2A4RGQ9NR83 387 aa5.02□□□□□ -1.61
VPS4B-203ENST00000588323 ADCY7P51828 1080 aa5.01□□□□□ -1.61
VPS4B-203ENST00000588323 TRIM61Q5EBN2 209 aa5.01□□□□□ -1.61
VPS4B-203ENST00000588323 ZNF662Q6ZS27 426 aa5.01□□□□□ -1.61
VPS4B-203ENST00000588323 ZNF627Q7L945 461 aa5.01□□□□□ -1.61
VPS4B-203ENST00000588323 SLC7A14Q8TBB6 771 aa5.01□□□□□ -1.61
VPS4B-203ENST00000588323 E2F7Q96AV8 911 aa5.01□□□□□ -1.61
VPS4B-203ENST00000588323 MIEF2Q96C03 454 aa5.01□□□□□ -1.61
VPS4B-203ENST00000588323 FOXB1Q99853 325 aa5.01□□□□□ -1.61
VPS4B-203ENST00000588323 MAGEL2Q9UJ55 1249 aa5.01□□□□□ -1.61
VPS4B-203ENST00000588323 RBM8AQ9Y5S9 174 aaKnown RBP5.01□□□□□ -1.61
VPS4B-203ENST00000588323 TCRBV16S1A1N1A0A5B0 115 aa5□□□□□ -1.61
VPS4B-203ENST00000588323 GOLGA8BA8MQT2 603 aa5□□□□□ -1.61
VPS4B-203ENST00000588323 RAMP2O60895 175 aa5□□□□□ -1.61
VPS4B-203ENST00000588323 PPFIA2O75334 1257 aa5□□□□□ -1.61
VPS4B-203ENST00000588323 SCNN1GP51170 649 aa5□□□□□ -1.61
VPS4B-203ENST00000588323 BPIFB4P59827 614 aa5□□□□□ -1.61
VPS4B-203ENST00000588323 NANOS3P60323 173 aaKnown RBP5□□□□□ -1.61
VPS4B-203ENST00000588323 ACAP1Q15027 740 aa5□□□□□ -1.61
VPS4B-203ENST00000588323 TMEM177Q53S58 311 aa5□□□□□ -1.61
VPS4B-203ENST00000588323 BRAPQ7Z569 592 aa5□□□□□ -1.61
VPS4B-203ENST00000588323 RTN4RL1Q86UN2 441 aaPredicted RBP5□□□□□ -1.61
VPS4B-203ENST00000588323 ZNF575Q86XF7 245 aa5□□□□□ -1.61
VPS4B-203ENST00000588323 DNAJC10Q8IXB1 793 aa5□□□□□ -1.61
VPS4B-203ENST00000588323 GSPT2Q8IYD1 628 aaKnown RBP5□□□□□ -1.61
VPS4B-203ENST00000588323 IGSF22Q8N9C0 903 aa5□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms