RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 ERAP1Q9NZ08 941 aa27.83■■■□□ 2.05
SHMT1-207ENST00000580002 Q9Y3F1 56 aa27.83■■■□□ 2.05
SHMT1-207ENST00000580002 SYNRGQ9UMZ2 1314 aa27.82■■■□□ 2.04
SHMT1-207ENST00000580002 H3BRB1 525 aa27.82■■■□□ 2.04
SHMT1-207ENST00000580002 TBCAO75347 108 aaKnown RBP27.82■■■□□ 2.04
SHMT1-207ENST00000580002 ADSSL1Q8N142 457 aa27.82■■■□□ 2.04
SHMT1-207ENST00000580002 TUT1Q9H6E5 874 aaKnown RBP27.82■■■□□ 2.04
SHMT1-207ENST00000580002 KCND2Q9NZV8 630 aa27.82■■■□□ 2.04
SHMT1-207ENST00000580002 MYL3P08590 195 aa27.81■■■□□ 2.04
SHMT1-207ENST00000580002 C6orf222P0C671 652 aaPredicted RBP27.81■■■□□ 2.04
SHMT1-207ENST00000580002 NMT1P30419 496 aaKnown RBP27.81■■■□□ 2.04
SHMT1-207ENST00000580002 GRK4P32298 578 aa27.81■■■□□ 2.04
SHMT1-207ENST00000580002 ZNF131P52739 623 aa27.81■■■□□ 2.04
SHMT1-207ENST00000580002 PMS1P54277 932 aaKnown RBP27.81■■■□□ 2.04
SHMT1-207ENST00000580002 DRP2Q13474 957 aa27.81■■■□□ 2.04
SHMT1-207ENST00000580002 ARHGEF6Q15052 776 aa27.81■■■□□ 2.04
SHMT1-207ENST00000580002 FSCN1Q16658 493 aaKnown RBP27.81■■■□□ 2.04
SHMT1-207ENST00000580002 BSNDQ8WZ55 320 aa27.81■■■□□ 2.04
SHMT1-207ENST00000580002 CCDC47Q96A33 483 aaKnown RBP27.81■■■□□ 2.04
SHMT1-207ENST00000580002 TMEM143Q96AN5 459 aa27.81■■■□□ 2.04
SHMT1-207ENST00000580002 GRPEL1Q9HAV7 217 aa27.81■■■□□ 2.04
SHMT1-207ENST00000580002 CTNND2Q9UQB3 1225 aa27.81■■■□□ 2.04
SHMT1-207ENST00000580002 MYBP10242 640 aa27.81■■■□□ 2.04
SHMT1-207ENST00000580002 INSRRP14616 1297 aa27.81■■■□□ 2.04
SHMT1-207ENST00000580002 IGBP1P78318 339 aa27.81■■■□□ 2.04
SHMT1-207ENST00000580002 NCAPHQ15003 741 aa27.81■■■□□ 2.04
SHMT1-207ENST00000580002 KSR1Q8IVT5 923 aa27.81■■■□□ 2.04
SHMT1-207ENST00000580002 DHX33Q9H6R0 707 aaKnown RBP27.81■■■□□ 2.04
SHMT1-207ENST00000580002 COL4A3BPQ9Y5P4 624 aa27.81■■■□□ 2.04
SHMT1-207ENST00000580002 RBAK-RBAKDNI3L0D1 243 aa27.8■■■□□ 2.04
SHMT1-207ENST00000580002 GJA9P57773 515 aa27.8■■■□□ 2.04
SHMT1-207ENST00000580002 EMC2Q15006 297 aa27.8■■■□□ 2.04
SHMT1-207ENST00000580002 PARVGQ9HBI0 331 aa27.8■■■□□ 2.04
SHMT1-207ENST00000580002 ODF2LQ9ULJ1 636 aa27.8■■■□□ 2.04
SHMT1-207ENST00000580002 ARID2Q68CP9 1835 aa27.8■■■□□ 2.04
SHMT1-207ENST00000580002 TRIM49BA6NDI0 452 aa27.79■■■□□ 2.04
SHMT1-207ENST00000580002 DGAT1O75907 488 aa27.79■■■□□ 2.04
SHMT1-207ENST00000580002 POLGP54098 1239 aaPredicted RBP27.79■■■□□ 2.04
SHMT1-207ENST00000580002 FAM167AQ96KS9 214 aa27.79■■■□□ 2.04
SHMT1-207ENST00000580002 IKZF4Q9H2S9 585 aa27.79■■■□□ 2.04
SHMT1-207ENST00000580002 PTPN22Q9Y2R2 807 aa27.79■■■□□ 2.04
SHMT1-207ENST00000580002 HBP1O60381 514 aa27.78■■■□□ 2.04
SHMT1-207ENST00000580002 MYCP01106 439 aaPredicted RBP27.78■■■□□ 2.04
SHMT1-207ENST00000580002 MYCNP04198 464 aaPredicted RBP27.78■■■□□ 2.04
SHMT1-207ENST00000580002 RARBP10826 455 aa27.78■■■□□ 2.04
SHMT1-207ENST00000580002 SLC26A2P50443 739 aa27.78■■■□□ 2.04
SHMT1-207ENST00000580002 MKRN4PQ13434 485 aaPredicted RBP27.78■■■□□ 2.04
SHMT1-207ENST00000580002 ZC2HC1CQ53FD0 456 aaPredicted RBP27.78■■■□□ 2.04
SHMT1-207ENST00000580002 ODR4Q5SWX8 454 aa27.78■■■□□ 2.04
SHMT1-207ENST00000580002 SLAIN1Q8ND83 568 aa27.78■■■□□ 2.04
SHMT1-207ENST00000580002 NELFBQ8WX92 580 aa27.78■■■□□ 2.04
SHMT1-207ENST00000580002 ATP6V0A4Q9HBG4 840 aa27.78■■■□□ 2.04
SHMT1-207ENST00000580002 ADAMTS4O75173 837 aa27.78■■■□□ 2.04
SHMT1-207ENST00000580002 CPT1AP50416 773 aa27.78■■■□□ 2.04
SHMT1-207ENST00000580002 PRMT2P55345 433 aa27.78■■■□□ 2.04
SHMT1-207ENST00000580002 KCNA1Q09470 495 aa27.78■■■□□ 2.04
SHMT1-207ENST00000580002 PSMD2Q13200 908 aa27.78■■■□□ 2.04
SHMT1-207ENST00000580002 GNASQ5JWF2 1037 aa27.78■■■□□ 2.04
SHMT1-207ENST00000580002 LRRC71Q8N4P6 559 aa27.78■■■□□ 2.04
SHMT1-207ENST00000580002 SCFD1Q8WVM8 642 aa27.78■■■□□ 2.04
SHMT1-207ENST00000580002 UPF3AQ9H1J1 476 aaKnown RBP27.78■■■□□ 2.04
SHMT1-207ENST00000580002 MRPL44Q9H9J2 332 aaKnown RBP27.78■■■□□ 2.04
SHMT1-207ENST00000580002 XPNPEP3Q9NQH7 507 aa27.78■■■□□ 2.04
SHMT1-207ENST00000580002 LOXHD1Q8IVV2 1947 aa27.77■■■□□ 2.04
SHMT1-207ENST00000580002 PRPF6O94906 941 aaKnown RBP27.77■■■□□ 2.04
SHMT1-207ENST00000580002 HOXD13P35453 343 aa27.77■■■□□ 2.04
SHMT1-207ENST00000580002 HIC1Q14526 733 aa27.77■■■□□ 2.04
SHMT1-207ENST00000580002 NELFCDQ8IXH7 590 aa27.77■■■□□ 2.04
SHMT1-207ENST00000580002 BPIFA3Q9BQP9 254 aa27.77■■■□□ 2.04
SHMT1-207ENST00000580002 KIFC3Q9BVG8 833 aa27.77■■■□□ 2.04
SHMT1-207ENST00000580002 NAT10Q9H0A0 1025 aaKnown RBP27.77■■■□□ 2.04
SHMT1-207ENST00000580002 HSD3B7Q9H2F3 369 aa27.77■■■□□ 2.04
SHMT1-207ENST00000580002 SEMA6BQ9H3T3 888 aa27.77■■■□□ 2.04
SHMT1-207ENST00000580002 AP5Z1O43299 807 aa27.76■■■□□ 2.03
SHMT1-207ENST00000580002 MAFO75444 373 aaPredicted RBP27.76■■■□□ 2.03
SHMT1-207ENST00000580002 F2P00734 622 aa27.76■■■□□ 2.03
SHMT1-207ENST00000580002 HSPA8P11142 646 aaKnown RBP27.76■■■□□ 2.03
SHMT1-207ENST00000580002 PEX3P56589 373 aa27.76■■■□□ 2.03
SHMT1-207ENST00000580002 KIAA0753Q2KHM9 967 aa27.76■■■□□ 2.03
SHMT1-207ENST00000580002 HSP90AA4PQ58FG1 418 aa27.76■■■□□ 2.03
SHMT1-207ENST00000580002 POLR3FQ9H1D9 316 aaPredicted RBP27.76■■■□□ 2.03
SHMT1-207ENST00000580002 SUGCTQ9HAC7 445 aa27.76■■■□□ 2.03
SHMT1-207ENST00000580002 DDX20Q9UHI6 824 aaKnown RBP27.76■■■□□ 2.03
SHMT1-207ENST00000580002 PLS3P13797 630 aa27.76■■■□□ 2.03
SHMT1-207ENST00000580002 GAP43P17677 238 aa27.76■■■□□ 2.03
SHMT1-207ENST00000580002 PURAQ00577 322 aaKnown RBP27.76■■■□□ 2.03
SHMT1-207ENST00000580002 EPM2AIP1Q7L775 607 aaPredicted RBP27.76■■■□□ 2.03
SHMT1-207ENST00000580002 ASAP3Q8TDY4 903 aa27.76■■■□□ 2.03
SHMT1-207ENST00000580002 SETD4Q9NVD3 440 aa27.76■■■□□ 2.03
SHMT1-207ENST00000580002 ZNF215Q9UL58 517 aaPredicted RBP27.76■■■□□ 2.03
SHMT1-207ENST00000580002 GJB1P08034 283 aa27.75■■■□□ 2.03
SHMT1-207ENST00000580002 TBC1D8BQ0IIM8 1120 aa27.75■■■□□ 2.03
SHMT1-207ENST00000580002 L1TD1Q5T7N2 865 aaKnown RBP27.75■■■□□ 2.03
SHMT1-207ENST00000580002 CXCL17Q6UXB2 119 aa27.75■■■□□ 2.03
SHMT1-207ENST00000580002 ZNF720Q7Z2F6 126 aa27.75■■■□□ 2.03
SHMT1-207ENST00000580002 DACH1Q9UI36 760 aa27.75■■■□□ 2.03
SHMT1-207ENST00000580002 GCNT3O95395 438 aa27.74■■■□□ 2.03
SHMT1-207ENST00000580002 ERCC5P28715 1186 aaPredicted RBP27.74■■■□□ 2.03
SHMT1-207ENST00000580002 PSEN2P49810 448 aa27.74■■■□□ 2.03
SHMT1-207ENST00000580002 PAK1Q13153 545 aa27.74■■■□□ 2.03
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms