RNA–Protein interactions for RNA: ENST00000574087.1

NUP88-208, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 548 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-208ENST00000574087 PRAMEF9Q5VWM5 478 aa6.61□□□□□ -1.35
NUP88-208ENST00000574087 Q6ZUG5 572 aa6.61□□□□□ -1.35
NUP88-208ENST00000574087 FRMD7Q6ZUT3 714 aa6.61□□□□□ -1.35
NUP88-208ENST00000574087 SPATS2Q86XZ4 545 aaKnown RBP6.61□□□□□ -1.35
NUP88-208ENST00000574087 KLHL36Q8N4N3 616 aa6.61□□□□□ -1.35
NUP88-208ENST00000574087 WDR48Q8TAF3 677 aa6.61□□□□□ -1.35
NUP88-208ENST00000574087 MYL10Q9BUA6 226 aa6.61□□□□□ -1.35
NUP88-208ENST00000574087 FBXO10Q9UK96 956 aa6.61□□□□□ -1.35
NUP88-208ENST00000574087 MROH6A6NGR9 719 aa6.6□□□□□ -1.35
NUP88-208ENST00000574087 CUTAO60888 179 aa6.6□□□□□ -1.35
NUP88-208ENST00000574087 BMP7P18075 431 aa6.6□□□□□ -1.35
NUP88-208ENST00000574087 CDK11BP21127 795 aaKnown RBP6.6□□□□□ -1.35
NUP88-208ENST00000574087 CDKN1CP49918 316 aaPredicted RBP6.6□□□□□ -1.35
NUP88-208ENST00000574087 ADCY2Q08462 1091 aa6.6□□□□□ -1.35
NUP88-208ENST00000574087 NFATC3Q12968 1075 aa6.6□□□□□ -1.35
NUP88-208ENST00000574087 GRAMD4Q6IC98 578 aa6.6□□□□□ -1.35
NUP88-208ENST00000574087 KIAA1841Q6NSI8 718 aa6.6□□□□□ -1.35
NUP88-208ENST00000574087 TIGD7Q6NT04 549 aaPredicted RBP6.6□□□□□ -1.35
NUP88-208ENST00000574087 UNQ6494/PRO21346Q6UXR6 183 aa6.6□□□□□ -1.35
NUP88-208ENST00000574087 ESPNLQ6ZVH7 1005 aa6.6□□□□□ -1.35
NUP88-208ENST00000574087 HDGFL2Q7Z4V5 671 aaPredicted RBP6.6□□□□□ -1.35
NUP88-208ENST00000574087 BCL6BQ8N143 479 aaPredicted RBP6.6□□□□□ -1.35
NUP88-208ENST00000574087 SYT8Q8NBV8 401 aa6.6□□□□□ -1.35
NUP88-208ENST00000574087 LCORQ96JN0 433 aaPredicted RBP6.6□□□□□ -1.35
NUP88-208ENST00000574087 VTA1Q9NP79 307 aa6.6□□□□□ -1.35
NUP88-208ENST00000574087 ADAM29Q9UKF5 820 aa6.6□□□□□ -1.35
NUP88-208ENST00000574087 NOC2LQ9Y3T9 749 aaKnown RBP6.6□□□□□ -1.35
NUP88-208ENST00000574087 A0A0G2JNJ9 132 aa6.59□□□□□ -1.35
NUP88-208ENST00000574087 KDM1AO60341 852 aa6.59□□□□□ -1.35
NUP88-208ENST00000574087 RAB11FIP3O75154 756 aa6.59□□□□□ -1.35
NUP88-208ENST00000574087 PRKD3O94806 890 aa6.59□□□□□ -1.35
NUP88-208ENST00000574087 ADCY8P40145 1251 aa6.59□□□□□ -1.35
NUP88-208ENST00000574087 BCAR1P56945 870 aa6.59□□□□□ -1.35
NUP88-208ENST00000574087 EIF4HQ15056 248 aaKnown RBP6.59□□□□□ -1.35
NUP88-208ENST00000574087 PDCD1Q15116 288 aa6.59□□□□□ -1.35
NUP88-208ENST00000574087 ZBTB41Q5SVQ8 909 aa6.59□□□□□ -1.35
NUP88-208ENST00000574087 NT5DC1Q5TFE4 455 aa6.59□□□□□ -1.35
NUP88-208ENST00000574087 IQSEC1Q6DN90 963 aa6.59□□□□□ -1.35
NUP88-208ENST00000574087 SPOCD1Q6ZMY3 1216 aa6.59□□□□□ -1.35
NUP88-208ENST00000574087 CXorf67Q86X51 503 aaPredicted RBP6.59□□□□□ -1.35
NUP88-208ENST00000574087 REXO1L1PQ8IX06 675 aa6.59□□□□□ -1.35
NUP88-208ENST00000574087 PRPF38AQ8NAV1 312 aaKnown RBP6.59□□□□□ -1.35
NUP88-208ENST00000574087 BARX1Q9HBU1 254 aaPredicted RBP6.59□□□□□ -1.35
NUP88-208ENST00000574087 TOPORSQ9NS56 1045 aaPredicted RBP6.59□□□□□ -1.35
NUP88-208ENST00000574087 Q9UFV3 132 aa6.59□□□□□ -1.35
NUP88-208ENST00000574087 CSF2RBP32927 897 aa6.58□□□□□ -1.36
NUP88-208ENST00000574087 ETV4P43268 484 aa6.58□□□□□ -1.36
NUP88-208ENST00000574087 GJA9P57773 515 aa6.58□□□□□ -1.36
NUP88-208ENST00000574087 KIAA2012Q0VF49 1180 aa6.58□□□□□ -1.36
NUP88-208ENST00000574087 MAP3K12Q12852 859 aa6.58□□□□□ -1.36
NUP88-208ENST00000574087 FAPQ12884 760 aa6.58□□□□□ -1.36
NUP88-208ENST00000574087 TRIM68Q6AZZ1 485 aa6.58□□□□□ -1.36
NUP88-208ENST00000574087 OTOP2Q7RTS6 562 aa6.58□□□□□ -1.36
NUP88-208ENST00000574087 NECAB2Q7Z6G3 386 aa6.58□□□□□ -1.36
NUP88-208ENST00000574087 FEZF2Q8TBJ5 459 aa6.58□□□□□ -1.36
NUP88-208ENST00000574087 RPGRQ92834 1020 aaKnown RBP6.58□□□□□ -1.36
NUP88-208ENST00000574087 PITHD1Q9GZP4 211 aaPredicted RBP6.58□□□□□ -1.36
NUP88-208ENST00000574087 HAPLN2Q9GZV7 340 aa6.58□□□□□ -1.36
NUP88-208ENST00000574087 XYLT2Q9H1B5 865 aa6.58□□□□□ -1.36
NUP88-208ENST00000574087 KCMF1Q9P0J7 381 aa6.58□□□□□ -1.36
NUP88-208ENST00000574087 CDC42EP3Q9UKI2 254 aa6.58□□□□□ -1.36
NUP88-208ENST00000574087 DENND2AQ9ULE3 1009 aa6.58□□□□□ -1.36
NUP88-208ENST00000574087 NOP58Q9Y2X3 529 aaKnown RBP6.58□□□□□ -1.36
NUP88-208ENST00000574087 A0A0A6YYJ9 748 aa6.57□□□□□ -1.36
NUP88-208ENST00000574087 K7ESF4 209 aa6.57□□□□□ -1.36
NUP88-208ENST00000574087 SASH1O94885 1247 aa6.57□□□□□ -1.36
NUP88-208ENST00000574087 APOL3O95236 402 aa6.57□□□□□ -1.36
NUP88-208ENST00000574087 NCLP19338 710 aaKnown RBP6.57□□□□□ -1.36
NUP88-208ENST00000574087 KCNQ1P51787 676 aa6.57□□□□□ -1.36
NUP88-208ENST00000574087 MANFP55145 182 aaKnown RBP6.57□□□□□ -1.36
NUP88-208ENST00000574087 ANTXR2P58335 489 aa6.57□□□□□ -1.36
NUP88-208ENST00000574087 BMP8AQ7Z5Y6 402 aa6.57□□□□□ -1.36
NUP88-208ENST00000574087 COG1Q8WTW3 980 aa6.57□□□□□ -1.36
NUP88-208ENST00000574087 CARD11Q9BXL7 1154 aa6.57□□□□□ -1.36
NUP88-208ENST00000574087 ANO3Q9BYT9 981 aa6.57□□□□□ -1.36
NUP88-208ENST00000574087 SLC5A4Q9NY91 659 aa6.57□□□□□ -1.36
NUP88-208ENST00000574087 TMPRSS11EQ9UL52 423 aa6.57□□□□□ -1.36
NUP88-208ENST00000574087 ZDHHC9Q9Y397 364 aa6.57□□□□□ -1.36
NUP88-208ENST00000574087 PPP2R3BQ9Y5P8 575 aa6.57□□□□□ -1.36
NUP88-208ENST00000574087 MYPNQ86TC9 1320 aa6.56□□□□□ -1.36
NUP88-208ENST00000574087 PRSS38A1L453 326 aa6.56□□□□□ -1.36
NUP88-208ENST00000574087 ZNF888P0CJ79 500 aaPredicted RBP6.56□□□□□ -1.36
NUP88-208ENST00000574087 IBSPP21815 317 aaPredicted RBP6.56□□□□□ -1.36
NUP88-208ENST00000574087 EVA1CP58658 441 aa6.56□□□□□ -1.36
NUP88-208ENST00000574087 ERVK-21P61565 698 aa6.56□□□□□ -1.36
NUP88-208ENST00000574087 FZD5Q13467 585 aa6.56□□□□□ -1.36
NUP88-208ENST00000574087 DGKDQ16760 1214 aa6.56□□□□□ -1.36
NUP88-208ENST00000574087 ZNF827Q17R98 1081 aa6.56□□□□□ -1.36
NUP88-208ENST00000574087 LARP4Q71RC2 724 aaKnown RBP eCLIP6.56□□□□□ -1.36
NUP88-208ENST00000574087 FAM124AQ86V42 546 aa6.56□□□□□ -1.36
NUP88-208ENST00000574087 IFNL2Q8IZJ0 200 aa6.56□□□□□ -1.36
NUP88-208ENST00000574087 OR5AN1Q8NGI8 311 aa6.56□□□□□ -1.36
NUP88-208ENST00000574087 LMBR1Q8WVP7 490 aa6.56□□□□□ -1.36
NUP88-208ENST00000574087 TRIM8Q9BZR9 551 aa6.56□□□□□ -1.36
NUP88-208ENST00000574087 PUS7LQ9H0K6 701 aaKnown RBP6.56□□□□□ -1.36
NUP88-208ENST00000574087 MTG2Q9H4K7 406 aa6.56□□□□□ -1.36
NUP88-208ENST00000574087 PARD6AQ9NPB6 346 aa6.56□□□□□ -1.36
NUP88-208ENST00000574087 KCNG1Q9UIX4 513 aa6.56□□□□□ -1.36
NUP88-208ENST00000574087 NUMBLQ9Y6R0 609 aa6.56□□□□□ -1.36
NUP88-208ENST00000574087 OTOL1A6NHN0 477 aaPredicted RBP6.55□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms