RNA–Protein interactions for RNA: ENST00000569430.6

CLN3-238, Transcript of CLN3, battenin, human

APPRIS P1 TSL 5 BASIC

Gene CLN3, Length 3,867 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN3-238	ENST00000569430	GLIS3	Q8NEA6	775 aa		12.32	□□□□□ -0.44
CLN3-238	ENST00000569430	P3H4	Q92791	437 aa		12.32	□□□□□ -0.44
CLN3-238	ENST00000569430	CEP95	Q96GE4	821 aa		12.32	□□□□□ -0.44
CLN3-238	ENST00000569430	CEP63	Q96MT8	703 aa		12.32	□□□□□ -0.44
CLN3-238	ENST00000569430	NYX	Q9GZU5	481 aa		12.32	□□□□□ -0.44
CLN3-238	ENST00000569430	RTCB	Q9Y3I0	505 aa	Known RBP	12.32	□□□□□ -0.44
CLN3-238	ENST00000569430	IGF2BP3	O00425	579 aa	Known RBP eCLIP	12.32	□□□□□ -0.44
CLN3-238	ENST00000569430	GNPAT	O15228	680 aa		12.32	□□□□□ -0.44
CLN3-238	ENST00000569430	SP4	Q02446	784 aa		12.32	□□□□□ -0.44
CLN3-238	ENST00000569430	NSUN4	Q96CB9	384 aa	Known RBP	12.32	□□□□□ -0.44
CLN3-238	ENST00000569430	ZNF653	Q96CK0	615 aa		12.32	□□□□□ -0.44
CLN3-238	ENST00000569430	RABGAP1	Q9Y3P9	1069 aa		12.32	□□□□□ -0.44
CLN3-238	ENST00000569430	LOC102724428	A0A0B4J2F2	783 aa		12.31	□□□□□ -0.44
CLN3-238	ENST00000569430	STXBP3	O00186	592 aa		12.31	□□□□□ -0.44
CLN3-238	ENST00000569430	CP	P00450	1065 aa		12.31	□□□□□ -0.44
CLN3-238	ENST00000569430	PSMC2	P35998	433 aa	Known RBP	12.31	□□□□□ -0.44
CLN3-238	ENST00000569430	SIK1	P57059	783 aa		12.31	□□□□□ -0.44
CLN3-238	ENST00000569430	SNAP25	P60880	206 aa		12.31	□□□□□ -0.44
CLN3-238	ENST00000569430	CDK17	Q00537	523 aa		12.31	□□□□□ -0.44
CLN3-238	ENST00000569430	DRAP1	Q14919	205 aa	Predicted RBP	12.31	□□□□□ -0.44
CLN3-238	ENST00000569430	FAM182B	Q5T319	152 aa		12.31	□□□□□ -0.44
CLN3-238	ENST00000569430	CLEC10A	Q8IUN9	316 aa		12.31	□□□□□ -0.44
CLN3-238	ENST00000569430	IQCK	Q8N0W5	287 aa		12.31	□□□□□ -0.44
CLN3-238	ENST00000569430	CCHCR1	Q8TD31	782 aa		12.31	□□□□□ -0.44
CLN3-238	ENST00000569430	GBP5	Q96PP8	586 aa		12.31	□□□□□ -0.44
CLN3-238	ENST00000569430	NAP1L4	Q99733	375 aa	Known RBP	12.31	□□□□□ -0.44
CLN3-238	ENST00000569430	TRIM49	P0CI25	452 aa		12.31	□□□□□ -0.44
CLN3-238	ENST00000569430	TRIM49C	P0CI26	452 aa		12.31	□□□□□ -0.44
CLN3-238	ENST00000569430	MYL7	Q01449	175 aa		12.31	□□□□□ -0.44
CLN3-238	ENST00000569430	KIAA1755	Q5JYT7	1200 aa		12.31	□□□□□ -0.44
CLN3-238	ENST00000569430	AGBL2	Q5U5Z8	902 aa		12.31	□□□□□ -0.44
CLN3-238	ENST00000569430	CCDC137	Q6PK04	289 aa	Known RBP	12.31	□□□□□ -0.44
CLN3-238	ENST00000569430	ARHGEF18	Q6ZSZ5	1173 aa		12.31	□□□□□ -0.44
CLN3-238	ENST00000569430	TSC22D3	Q99576	134 aa		12.31	□□□□□ -0.44
CLN3-238	ENST00000569430	ANAPC5	Q9UJX4	755 aa		12.31	□□□□□ -0.44
CLN3-238	ENST00000569430	TXNDC9	O14530	226 aa		12.31	□□□□□ -0.44
CLN3-238	ENST00000569430	SHOX2	O60902	331 aa	Predicted RBP	12.31	□□□□□ -0.44
CLN3-238	ENST00000569430	NR3C1	P04150	777 aa		12.31	□□□□□ -0.44
CLN3-238	ENST00000569430	MSH2	P43246	934 aa		12.31	□□□□□ -0.44
CLN3-238	ENST00000569430	CLUL1	Q15846	466 aa		12.31	□□□□□ -0.44
CLN3-238	ENST00000569430	CCDC62	Q6P9F0	684 aa		12.31	□□□□□ -0.44
CLN3-238	ENST00000569430	SLC35G2	Q8TBE7	412 aa		12.31	□□□□□ -0.44
CLN3-238	ENST00000569430	SALL4	Q9UJQ4	1053 aa		12.31	□□□□□ -0.44
CLN3-238	ENST00000569430	NAGPA	Q9UK23	515 aa		12.31	□□□□□ -0.44
CLN3-238	ENST00000569430	ATF7	P17544	494 aa	Predicted RBP	12.3	□□□□□ -0.44
CLN3-238	ENST00000569430	RAD23B	P54727	409 aa		12.3	□□□□□ -0.44
CLN3-238	ENST00000569430	TGS1	Q96RS0	853 aa	Known RBP	12.3	□□□□□ -0.44
CLN3-238	ENST00000569430	HEMGN	Q9BXL5	484 aa		12.3	□□□□□ -0.44
CLN3-238	ENST00000569430	CFAP73	A6NFT4	308 aa		12.3	□□□□□ -0.44
CLN3-238	ENST00000569430	KLRC4	O43908	158 aa		12.3	□□□□□ -0.44
CLN3-238	ENST00000569430	TOM1	O60784	492 aa		12.3	□□□□□ -0.44
CLN3-238	ENST00000569430	CA4	P22748	312 aa		12.3	□□□□□ -0.44
CLN3-238	ENST00000569430	GTF2I	P78347	998 aa		12.3	□□□□□ -0.44
CLN3-238	ENST00000569430	ITIH3	Q06033	890 aa		12.3	□□□□□ -0.44
CLN3-238	ENST00000569430	ZYX	Q15942	572 aa	Known RBP	12.3	□□□□□ -0.44
CLN3-238	ENST00000569430	MEI1	Q5TIA1	1274 aa		12.3	□□□□□ -0.44
CLN3-238	ENST00000569430	GBP7	Q8N8V2	638 aa	Predicted RBP	12.3	□□□□□ -0.44
CLN3-238	ENST00000569430	FBXO25	Q8TCJ0	367 aa		12.3	□□□□□ -0.44
CLN3-238	ENST00000569430	C1orf54	Q8WWF1	131 aa		12.3	□□□□□ -0.44
CLN3-238	ENST00000569430	ZNF148	Q9UQR1	794 aa		12.3	□□□□□ -0.44
CLN3-238	ENST00000569430	THRAP3	Q9Y2W1	955 aa	Known RBP	12.3	□□□□□ -0.44
CLN3-238	ENST00000569430	TACC3	Q9Y6A5	838 aa		12.3	□□□□□ -0.44
CLN3-238	ENST00000569430	LRRC37A3	O60309	1634 aa		12.3	□□□□□ -0.44
CLN3-238	ENST00000569430	CACNA1F	O60840	1977 aa		12.3	□□□□□ -0.44
CLN3-238	ENST00000569430	HSPA9	P38646	679 aa	Known RBP	12.3	□□□□□ -0.44
CLN3-238	ENST00000569430	GRB10	Q13322	594 aa		12.3	□□□□□ -0.44
CLN3-238	ENST00000569430	ITGB3BP	Q13352	177 aa	Predicted RBP	12.3	□□□□□ -0.44
CLN3-238	ENST00000569430	QPCT	Q16769	361 aa		12.3	□□□□□ -0.44
CLN3-238	ENST00000569430	MIIP	Q5JXC2	388 aa		12.3	□□□□□ -0.44
CLN3-238	ENST00000569430	KCNV1	Q6PIU1	500 aa		12.3	□□□□□ -0.44
CLN3-238	ENST00000569430	KIFAP3	Q92845	792 aa		12.3	□□□□□ -0.44
CLN3-238	ENST00000569430	HOOK2	Q96ED9	719 aa		12.3	□□□□□ -0.44
CLN3-238	ENST00000569430	OSBPL1A	Q9BXW6	950 aa		12.3	□□□□□ -0.44
CLN3-238	ENST00000569430	TRIM4	Q9C037	500 aa		12.3	□□□□□ -0.44
CLN3-238	ENST00000569430	GDF3	Q9NR23	364 aa		12.3	□□□□□ -0.44
CLN3-238	ENST00000569430	FTL	P02792	175 aa	Predicted RBP	12.29	□□□□□ -0.44
CLN3-238	ENST00000569430	TROVE2	P10155	538 aa	Known RBP eCLIP	12.29	□□□□□ -0.44
CLN3-238	ENST00000569430	PLCB4	Q15147	1175 aa		12.29	□□□□□ -0.44
CLN3-238	ENST00000569430	KNOP1	Q1ED39	458 aa	Known RBP	12.29	□□□□□ -0.44
CLN3-238	ENST00000569430	EPS8L3	Q8TE67	593 aa	Known RBP	12.29	□□□□□ -0.44
CLN3-238	ENST00000569430	ZC3H12C	Q9C0D7	883 aa	Known RBP	12.29	□□□□□ -0.44
CLN3-238	ENST00000569430	KIF9	Q9HAQ2	790 aa		12.29	□□□□□ -0.44
CLN3-238	ENST00000569430	USP15	Q9Y4E8	981 aa	Predicted RBP	12.29	□□□□□ -0.44
CLN3-238	ENST00000569430	RASA4B	C9J798	803 aa		12.29	□□□□□ -0.44
CLN3-238	ENST00000569430	RASA4	O43374	803 aa		12.29	□□□□□ -0.44
CLN3-238	ENST00000569430	UBOX5	O94941	541 aa		12.29	□□□□□ -0.44
CLN3-238	ENST00000569430	ATP2A2	P16615	1042 aa	Known RBP	12.29	□□□□□ -0.44
CLN3-238	ENST00000569430	SCNN1D	P51172	638 aa		12.29	□□□□□ -0.44
CLN3-238	ENST00000569430	C12orf60	Q5U649	245 aa		12.29	□□□□□ -0.44
CLN3-238	ENST00000569430	JAML	Q86YT9	394 aa		12.29	□□□□□ -0.44
CLN3-238	ENST00000569430	ANKRD35	Q8N283	1001 aa		12.29	□□□□□ -0.44
CLN3-238	ENST00000569430	TPCN2	Q8NHX9	752 aa		12.29	□□□□□ -0.44
CLN3-238	ENST00000569430	DGCR8	Q8WYQ5	773 aa	Known RBP eCLIP	12.29	□□□□□ -0.44	5e-8	■■■■■ 65.3
CLN3-238	ENST00000569430	RIOK1	Q9BRS2	568 aa	Known RBP	12.29	□□□□□ -0.44
CLN3-238	ENST00000569430	ERP44	Q9BS26	406 aa		12.29	□□□□□ -0.44
CLN3-238	ENST00000569430	OSGEP	Q9NPF4	335 aa		12.29	□□□□□ -0.44
CLN3-238	ENST00000569430	TXLNG	Q9NUQ3	528 aa		12.29	□□□□□ -0.44
CLN3-238	ENST00000569430	MARF1	Q9Y4F3	1742 aa	Known RBP	12.29	□□□□□ -0.44
CLN3-238	ENST00000569430	PODXL	O00592	558 aa		12.29	□□□□□ -0.44
CLN3-238	ENST00000569430	TRAPPC3	O43617	180 aa		12.29	□□□□□ -0.44

Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms