RNA–Protein interactions for RNA: ENST00000568029.5

VPS39-209, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 5

Gene VPS39, Length 791 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-209ENST00000568029 RAB3GAP1Q15042 981 aa6.97□□□□□ -1.29
VPS39-209ENST00000568029 IFI16Q16666 785 aaKnown RBP6.97□□□□□ -1.29
VPS39-209ENST00000568029 HSP90AB3PQ58FF7 597 aa6.97□□□□□ -1.29
VPS39-209ENST00000568029 ZC3H12BQ5HYM0 836 aaKnown RBP6.97□□□□□ -1.29
VPS39-209ENST00000568029 EPHA10Q5JZY3 1008 aa6.97□□□□□ -1.29
VPS39-209ENST00000568029 GIMAP6Q6P9H5 292 aa6.97□□□□□ -1.29
VPS39-209ENST00000568029 POMZP3Q6PJE2 187 aa6.97□□□□□ -1.29
VPS39-209ENST00000568029 LMBR1LQ6UX01 489 aa6.97□□□□□ -1.29
VPS39-209ENST00000568029 TICAM2Q86XR7 235 aa6.97□□□□□ -1.29
VPS39-209ENST00000568029 ARHGEF39Q8N4T4 335 aa6.97□□□□□ -1.29
VPS39-209ENST00000568029 DAGLBQ8NCG7 672 aa6.97□□□□□ -1.29
VPS39-209ENST00000568029 NETO1Q8TDF5 533 aa6.97□□□□□ -1.29
VPS39-209ENST00000568029 EAF2Q96CJ1 260 aaPredicted RBP6.97□□□□□ -1.29
VPS39-209ENST00000568029 SHISA4Q96DD7 197 aa6.97□□□□□ -1.29
VPS39-209ENST00000568029 RBM17Q96I25 401 aaKnown RBP6.97□□□□□ -1.29
VPS39-209ENST00000568029 CCDC8Q9H0W5 538 aaPredicted RBP6.97□□□□□ -1.29
VPS39-209ENST00000568029 SIL1Q9H173 461 aa6.97□□□□□ -1.29
VPS39-209ENST00000568029 GPR108Q9NPR9 543 aa6.97□□□□□ -1.29
VPS39-209ENST00000568029 FBXL21Q9UKT6 434 aa6.97□□□□□ -1.29
VPS39-209ENST00000568029 PTPN22Q9Y2R2 807 aa6.97□□□□□ -1.29
VPS39-209ENST00000568029 ALPK3Q96L96 1907 aa6.97□□□□□ -1.29
VPS39-209ENST00000568029 SSC5DA1L4H1 1573 aa6.96□□□□□ -1.29
VPS39-209ENST00000568029 TMEM265A0A087WTH1 108 aa6.96□□□□□ -1.3
VPS39-209ENST00000568029 IL15P40933 162 aaPredicted RBP6.96□□□□□ -1.3
VPS39-209ENST00000568029 KCNJ4P48050 445 aa6.96□□□□□ -1.3
VPS39-209ENST00000568029 TM4SF4P48230 202 aa6.96□□□□□ -1.3
VPS39-209ENST00000568029 RFX5P48382 616 aaPredicted RBP6.96□□□□□ -1.3
VPS39-209ENST00000568029 ZNF445P59923 1031 aa6.96□□□□□ -1.3
VPS39-209ENST00000568029 FOXO4P98177 505 aa6.96□□□□□ -1.3
VPS39-209ENST00000568029 TFCP2Q12800 502 aa6.96□□□□□ -1.3
VPS39-209ENST00000568029 GRB10Q13322 594 aa6.96□□□□□ -1.3
VPS39-209ENST00000568029 PRKG1Q13976 671 aa6.96□□□□□ -1.3
VPS39-209ENST00000568029 TNIP1Q15025 636 aa6.96□□□□□ -1.3
VPS39-209ENST00000568029 CWC27Q6UX04 472 aaKnown RBP6.96□□□□□ -1.3
VPS39-209ENST00000568029 ZNF655Q8N720 491 aaPredicted RBP6.96□□□□□ -1.3
VPS39-209ENST00000568029 BVESQ8NE79 360 aa6.96□□□□□ -1.3
VPS39-209ENST00000568029 TNPO1Q92973 898 aaKnown RBP6.96□□□□□ -1.3
VPS39-209ENST00000568029 ZNF333Q96JL9 665 aa6.96□□□□□ -1.3
VPS39-209ENST00000568029 DNAJC7Q99615 494 aa6.96□□□□□ -1.3
VPS39-209ENST00000568029 ISCA1Q9BUE6 129 aa6.96□□□□□ -1.3
VPS39-209ENST00000568029 LSG1Q9H089 658 aaKnown RBP6.96□□□□□ -1.3
VPS39-209ENST00000568029 DUSP15Q9H1R2 295 aaPredicted RBP6.96□□□□□ -1.3
VPS39-209ENST00000568029 GPATCH2Q9NW75 528 aa6.96□□□□□ -1.3
VPS39-209ENST00000568029 CDH23Q9H251 3354 aa6.96□□□□□ -1.3
VPS39-209ENST00000568029 RAD50Q92878 1312 aa6.96□□□□□ -1.3
VPS39-209ENST00000568029 LAMA2P24043 3122 aaKnown RBP6.95□□□□□ -1.3
VPS39-209ENST00000568029 ECE2O60344 883 aa6.95□□□□□ -1.3
VPS39-209ENST00000568029 ADAM23O75077 832 aa6.95□□□□□ -1.3
VPS39-209ENST00000568029 CAPNS1P04632 268 aa6.95□□□□□ -1.3
VPS39-209ENST00000568029 ZKSCAN1P17029 563 aaPredicted RBP6.95□□□□□ -1.3
VPS39-209ENST00000568029 PSMA5P28066 241 aa6.95□□□□□ -1.3
VPS39-209ENST00000568029 SSRP1Q08945 709 aaKnown RBP6.95□□□□□ -1.3
VPS39-209ENST00000568029 SNW1Q13573 536 aaKnown RBP6.95□□□□□ -1.3
VPS39-209ENST00000568029 CCDC57Q2TAC2 916 aa6.95□□□□□ -1.3
VPS39-209ENST00000568029 C2orf27AQ580R0 203 aa6.95□□□□□ -1.3
VPS39-209ENST00000568029 PRSS36Q5K4E3 855 aa6.95□□□□□ -1.3
VPS39-209ENST00000568029 NOL9Q5SY16 702 aaKnown RBP6.95□□□□□ -1.3
VPS39-209ENST00000568029 L1TD1Q5T7N2 865 aaKnown RBP6.95□□□□□ -1.3
VPS39-209ENST00000568029 CLEC17AQ6ZS10 378 aa6.95□□□□□ -1.3
VPS39-209ENST00000568029 FAM181AQ8N9Y4 354 aa6.95□□□□□ -1.3
VPS39-209ENST00000568029 THAP3Q8WTV1 239 aaPredicted RBP6.95□□□□□ -1.3
VPS39-209ENST00000568029 MISP3Q96FF7 219 aa6.95□□□□□ -1.3
VPS39-209ENST00000568029 INTS4Q96HW7 963 aaKnown RBP6.95□□□□□ -1.3
VPS39-209ENST00000568029 FSD1Q9BTV5 496 aa6.95□□□□□ -1.3
VPS39-209ENST00000568029 SPATA9Q9BWV2 254 aa6.95□□□□□ -1.3
VPS39-209ENST00000568029 HDAC8Q9BY41 377 aa6.95□□□□□ -1.3
VPS39-209ENST00000568029 BOLA2Q9H3K6 86 aa6.95□□□□□ -1.3
VPS39-209ENST00000568029 CHST7Q9NS84 486 aa6.95□□□□□ -1.3
VPS39-209ENST00000568029 FAM86C1Q9NVL1 165 aa6.95□□□□□ -1.3
VPS39-209ENST00000568029 PLAGL2Q9UPG8 496 aa6.95□□□□□ -1.3
VPS39-209ENST00000568029 SF3B6Q9Y3B4 125 aaKnown RBP6.95□□□□□ -1.3
VPS39-209ENST00000568029 EMC9Q9Y3B6 208 aa6.95□□□□□ -1.3
VPS39-209ENST00000568029 PTCH2Q9Y6C5 1203 aa6.95□□□□□ -1.3
VPS39-209ENST00000568029 U3KQE9 123 aa6.95□□□□□ -1.3
VPS39-209ENST00000568029 FPGT-TNNI3KV9GXZ4 949 aa6.95□□□□□ -1.3
VPS39-209ENST00000568029 ERVV-1B6SEH8 477 aa6.94□□□□□ -1.3
VPS39-209ENST00000568029 CIAO1O76071 339 aa6.94□□□□□ -1.3
VPS39-209ENST00000568029 PRAMEF1O95521 474 aa6.94□□□□□ -1.3
VPS39-209ENST00000568029 PCCAP05165 728 aaPredicted RBP6.94□□□□□ -1.3
VPS39-209ENST00000568029 GRIK1P39086 918 aa6.94□□□□□ -1.3
VPS39-209ENST00000568029 CUL4AQ13619 759 aa6.94□□□□□ -1.3
VPS39-209ENST00000568029 MSMPQ1L6U9 139 aa6.94□□□□□ -1.3
VPS39-209ENST00000568029 GAB4Q2WGN9 574 aa6.94□□□□□ -1.3
VPS39-209ENST00000568029 SV2CQ496J9 727 aa6.94□□□□□ -1.3
VPS39-209ENST00000568029 SPATC1Q76KD6 591 aa6.94□□□□□ -1.3
VPS39-209ENST00000568029 TMPRSS7Q7RTY8 843 aa6.94□□□□□ -1.3
VPS39-209ENST00000568029 TMC3Q7Z5M5 1100 aa6.94□□□□□ -1.3
VPS39-209ENST00000568029 ADAT2Q7Z6V5 191 aaKnown RBP6.94□□□□□ -1.3
VPS39-209ENST00000568029 TSPYL5Q86VY4 417 aaPredicted RBP6.94□□□□□ -1.3
VPS39-209ENST00000568029 LILRB2Q8N423 598 aa6.94□□□□□ -1.3
VPS39-209ENST00000568029 KLHDC4Q8TBB5 520 aa6.94□□□□□ -1.3
VPS39-209ENST00000568029 SH3TC2Q8TF17 1288 aa6.94□□□□□ -1.3
VPS39-209ENST00000568029 DPF2Q92785 391 aa6.94□□□□□ -1.3
VPS39-209ENST00000568029 TMX3Q96JJ7 454 aa6.94□□□□□ -1.3
VPS39-209ENST00000568029 MRGPRX3Q96LB0 322 aa6.94□□□□□ -1.3
VPS39-209ENST00000568029 ZSCAN31Q96LW9 406 aaPredicted RBP6.94□□□□□ -1.3
VPS39-209ENST00000568029 FGD4Q96M96 766 aa6.94□□□□□ -1.3
VPS39-209ENST00000568029 PLA2G12BQ9BX93 195 aa6.94□□□□□ -1.3
VPS39-209ENST00000568029 TM6SF1Q9BZW5 370 aa6.94□□□□□ -1.3
VPS39-209ENST00000568029 LRRC4CQ9HCJ2 640 aa6.94□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 73.5 ms