RNA–Protein interactions for RNA: ENST00000561505.2

CLN3-208, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-208ENST00000561505 PKN1Q16512 942 aa18.67■□□□□ 0.58
CLN3-208ENST00000561505 MIS18BP1Q6P0N0 1132 aa18.67■□□□□ 0.58
CLN3-208ENST00000561505 SMAP1Q8IYB5 467 aaPredicted RBP18.67■□□□□ 0.58
CLN3-208ENST00000561505 FBXL16Q8N461 479 aa18.67■□□□□ 0.58
CLN3-208ENST00000561505 COLGALT1Q8NBJ5 622 aa18.67■□□□□ 0.58
CLN3-208ENST00000561505 KCNB2Q92953 911 aa18.67■□□□□ 0.58
CLN3-208ENST00000561505 S1PR5Q9H228 398 aa18.67■□□□□ 0.58
CLN3-208ENST00000561505 TLE6Q9H808 572 aa18.67■□□□□ 0.58
CLN3-208ENST00000561505 TLR9Q9NR96 1032 aa18.67■□□□□ 0.58
CLN3-208ENST00000561505 RNF19AQ9NV58 838 aa18.67■□□□□ 0.58
CLN3-208ENST00000561505 TYW1Q9NV66 732 aaKnown RBP18.67■□□□□ 0.58
CLN3-208ENST00000561505 BARX2Q9UMQ3 279 aaPredicted RBP18.67■□□□□ 0.58
CLN3-208ENST00000561505 NID2Q14112 1375 aa18.67■□□□□ 0.58
CLN3-208ENST00000561505 BACH1O14867 736 aa18.66■□□□□ 0.58
CLN3-208ENST00000561505 ADAMTS3O15072 1205 aa18.66■□□□□ 0.58
CLN3-208ENST00000561505 EDIL3O43854 480 aa18.66■□□□□ 0.58
CLN3-208ENST00000561505 ZXDAP98168 799 aa18.66■□□□□ 0.58
CLN3-208ENST00000561505 LENG9Q96B70 501 aa18.66■□□□□ 0.58
CLN3-208ENST00000561505 TMEM117Q9H0C3 514 aa18.66■□□□□ 0.58
CLN3-208ENST00000561505 ADAMTS10Q9H324 1103 aa18.66■□□□□ 0.58
CLN3-208ENST00000561505 DENND3A2RUS2 1198 aa18.65■□□□□ 0.58
CLN3-208ENST00000561505 GOLGA8AA7E2F4 631 aa18.65■□□□□ 0.58
CLN3-208ENST00000561505 TBKBP1A7MCY6 615 aa18.65■□□□□ 0.58
CLN3-208ENST00000561505 GOLGA8BA8MQT2 603 aa18.65■□□□□ 0.58
CLN3-208ENST00000561505 ADD1P35611 737 aaKnown RBP18.65■□□□□ 0.58
CLN3-208ENST00000561505 ZNF76P36508 570 aa18.65■□□□□ 0.58
CLN3-208ENST00000561505 SETQ01105 290 aaPredicted RBP18.65■□□□□ 0.58
CLN3-208ENST00000561505 LRRC55Q6ZSA7 311 aa18.65■□□□□ 0.58
CLN3-208ENST00000561505 RBM23Q86U06 439 aaKnown RBP18.65■□□□□ 0.58
CLN3-208ENST00000561505 TCEANC2Q96MN5 208 aa18.65■□□□□ 0.58
CLN3-208ENST00000561505 CASD1Q96PB1 797 aa18.65■□□□□ 0.58
CLN3-208ENST00000561505 ATP6V0A4Q9HBG4 840 aa18.65■□□□□ 0.58
CLN3-208ENST00000561505 HCSTQ9UBK5 93 aa18.65■□□□□ 0.58
CLN3-208ENST00000561505 PCDHA10Q9Y5I2 948 aa18.65■□□□□ 0.58
CLN3-208ENST00000561505 EVPLQ92817 2033 aa18.64■□□□□ 0.58
CLN3-208ENST00000561505 KLF18A0A0U1RQI7 1052 aa18.64■□□□□ 0.57
CLN3-208ENST00000561505 TMEM221A6NGB7 291 aa18.64■□□□□ 0.57
CLN3-208ENST00000561505 M0R296 226 aa18.64■□□□□ 0.57
CLN3-208ENST00000561505 DDX39AO00148 427 aaKnown RBP18.64■□□□□ 0.57
CLN3-208ENST00000561505 MAGEB2O15479 319 aa18.64■□□□□ 0.57
CLN3-208ENST00000561505 HMGB1P09429 215 aaKnown RBP18.64■□□□□ 0.57
CLN3-208ENST00000561505 LAG3P18627 525 aa18.64■□□□□ 0.57
CLN3-208ENST00000561505 KRT32Q14532 448 aa18.64■□□□□ 0.57
CLN3-208ENST00000561505 KIZQ2M2Z5 673 aa18.64■□□□□ 0.57
CLN3-208ENST00000561505 JAKMIP3Q5VZ66 844 aa18.64■□□□□ 0.57
CLN3-208ENST00000561505 MRPS27Q92552 414 aaKnown RBP18.64■□□□□ 0.57
CLN3-208ENST00000561505 OSMRQ99650 979 aa18.64■□□□□ 0.57
CLN3-208ENST00000561505 ZNF577Q9BSK1 485 aa18.64■□□□□ 0.57
CLN3-208ENST00000561505 AGXT2Q9BYV1 514 aa18.64■□□□□ 0.57
CLN3-208ENST00000561505 CEP131Q9UPN4 1083 aa18.64■□□□□ 0.57
CLN3-208ENST00000561505 CCDC196A0A1B0GTZ2 297 aa18.63■□□□□ 0.57
CLN3-208ENST00000561505 PER2O15055 1255 aa18.63■□□□□ 0.57
CLN3-208ENST00000561505 PRPF3O43395 683 aaKnown RBP18.63■□□□□ 0.57
CLN3-208ENST00000561505 PSAPP07602 524 aa18.63■□□□□ 0.57
CLN3-208ENST00000561505 RBM10P98175 930 aaKnown RBP18.63■□□□□ 0.57
CLN3-208ENST00000561505 NGRNQ9NPE2 291 aaKnown RBP18.63■□□□□ 0.57
CLN3-208ENST00000561505 GINS2Q9Y248 185 aa18.63■□□□□ 0.57
CLN3-208ENST00000561505 HOXA2O43364 376 aa18.62■□□□□ 0.57
CLN3-208ENST00000561505 ZNF862O60290 1169 aa18.62■□□□□ 0.57
CLN3-208ENST00000561505 PPFIA3O75145 1194 aa18.62■□□□□ 0.57
CLN3-208ENST00000561505 CSPG5O95196 566 aa18.62■□□□□ 0.57
CLN3-208ENST00000561505 VTNP04004 478 aa18.62■□□□□ 0.57
CLN3-208ENST00000561505 FGFR1P11362 822 aa18.62■□□□□ 0.57
CLN3-208ENST00000561505 EIF4BP23588 611 aaKnown RBP18.62■□□□□ 0.57
CLN3-208ENST00000561505 NTRK3Q16288 839 aa18.62■□□□□ 0.57
CLN3-208ENST00000561505 SYCE2Q6PIF2 218 aa18.62■□□□□ 0.57
CLN3-208ENST00000561505 ZNF598Q86UK7 904 aaKnown RBP18.62■□□□□ 0.57
CLN3-208ENST00000561505 PRSS33Q8NF86 280 aa18.62■□□□□ 0.57
CLN3-208ENST00000561505 MICAL1Q8TDZ2 1067 aa18.62■□□□□ 0.57
CLN3-208ENST00000561505 ASIC4Q96FT7 647 aa18.62■□□□□ 0.57
CLN3-208ENST00000561505 FAM167AQ96KS9 214 aa18.62■□□□□ 0.57
CLN3-208ENST00000561505 PRRX2Q99811 253 aa18.62■□□□□ 0.57
CLN3-208ENST00000561505 C6orf50Q9HD87 102 aa18.62■□□□□ 0.57
CLN3-208ENST00000561505 HOXB8P17481 243 aaPredicted RBP18.61■□□□□ 0.57
CLN3-208ENST00000561505 IRX6P78412 446 aaPredicted RBP18.61■□□□□ 0.57
CLN3-208ENST00000561505 SIGLEC14Q08ET2 396 aa18.61■□□□□ 0.57
CLN3-208ENST00000561505 TARBP2Q15633 366 aaKnown RBP18.61■□□□□ 0.57
CLN3-208ENST00000561505 ANKRD54Q6NXT1 300 aa18.61■□□□□ 0.57
CLN3-208ENST00000561505 KCNT2Q6UVM3 1135 aa18.61■□□□□ 0.57
CLN3-208ENST00000561505 ECHDC2Q86YB7 292 aa18.61■□□□□ 0.57
CLN3-208ENST00000561505 THNSL1Q8IYQ7 743 aa18.61■□□□□ 0.57
CLN3-208ENST00000561505 REXO1Q8N1G1 1221 aaKnown RBP18.61■□□□□ 0.57
CLN3-208ENST00000561505 FBXL6Q8N531 539 aa18.61■□□□□ 0.57
CLN3-208ENST00000561505 CCDC12Q8WUD4 166 aaPredicted RBP18.61■□□□□ 0.57
CLN3-208ENST00000561505 PBXIP1Q96AQ6 731 aa18.61■□□□□ 0.57
CLN3-208ENST00000561505 TRAIPQ9BWF2 469 aa18.61■□□□□ 0.57
CLN3-208ENST00000561505 A0A0U1RQF3 1178 aa18.6■□□□□ 0.57
CLN3-208ENST00000561505 EOMESO95936 686 aa18.6■□□□□ 0.57
CLN3-208ENST00000561505 GNA11P29992 359 aa18.6■□□□□ 0.57
CLN3-208ENST00000561505 PPM1AP35813 382 aa18.6■□□□□ 0.57
CLN3-208ENST00000561505 CLCN3P51790 818 aa18.6■□□□□ 0.57
CLN3-208ENST00000561505 EVCP57679 992 aa18.6■□□□□ 0.57
CLN3-208ENST00000561505 NLRP11P59045 1033 aaKnown RBP18.6■□□□□ 0.57
CLN3-208ENST00000561505 IER5LQ5T953 404 aa18.6■□□□□ 0.57
CLN3-208ENST00000561505 EFCAB12Q6NXP0 572 aa18.6■□□□□ 0.57
CLN3-208ENST00000561505 B3GNT9Q6UX72 402 aa18.6■□□□□ 0.57
CLN3-208ENST00000561505 CEP89Q96ST8 783 aa18.6■□□□□ 0.57
CLN3-208ENST00000561505 RIT2Q99578 217 aa18.6■□□□□ 0.57
CLN3-208ENST00000561505 GABBR1Q9UBS5 961 aa18.6■□□□□ 0.57
CLN3-208ENST00000561505 PUF60Q9UHX1 559 aaKnown RBP18.6■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms