RNA–Protein interactions for RNA: ENST00000560202.1

USP3-218, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 1,681 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-218ENST00000560202 SYNRGQ9UMZ2 1314 aa12.42□□□□□ -0.42
USP3-218ENST00000560202 FKTNO75072 461 aa12.42□□□□□ -0.42
USP3-218ENST00000560202 LGALS2P05162 132 aa12.42□□□□□ -0.42
USP3-218ENST00000560202 MARK3P27448 753 aa12.42□□□□□ -0.42
USP3-218ENST00000560202 HOXD11P31277 338 aaPredicted RBP12.42□□□□□ -0.42
USP3-218ENST00000560202 PLCB2Q00722 1185 aa12.42□□□□□ -0.42
USP3-218ENST00000560202 PLCB4Q15147 1175 aa12.42□□□□□ -0.42
USP3-218ENST00000560202 MYOCDQ8IZQ8 938 aa12.42□□□□□ -0.42
USP3-218ENST00000560202 ATP8B4Q8TF62 1192 aa12.42□□□□□ -0.42
USP3-218ENST00000560202 BBXQ8WY36 941 aaPredicted RBP12.42□□□□□ -0.42
USP3-218ENST00000560202 ERO1AQ96HE7 468 aa12.42□□□□□ -0.42
USP3-218ENST00000560202 DRC1Q96MC2 740 aa12.42□□□□□ -0.42
USP3-218ENST00000560202 FGFBP2Q9BYJ0 223 aa12.42□□□□□ -0.42
USP3-218ENST00000560202 HSD3B7Q9H2F3 369 aa12.42□□□□□ -0.42
USP3-218ENST00000560202 PDLIM7Q9NR12 457 aa12.42□□□□□ -0.42
USP3-218ENST00000560202 FANCLQ9NW38 375 aa12.42□□□□□ -0.42
USP3-218ENST00000560202 ERAP1Q9NZ08 941 aa12.42□□□□□ -0.42
USP3-218ENST00000560202 NFE2L3Q9Y4A8 694 aa12.42□□□□□ -0.42
USP3-218ENST00000560202 AP5Z1O43299 807 aa12.41□□□□□ -0.42
USP3-218ENST00000560202 GNRH1P01148 92 aa12.41□□□□□ -0.42
USP3-218ENST00000560202 MMP3P08254 477 aa12.41□□□□□ -0.42
USP3-218ENST00000560202 HOXD8P13378 290 aaPredicted RBP12.41□□□□□ -0.42
USP3-218ENST00000560202 CYBAP13498 195 aa12.41□□□□□ -0.42
USP3-218ENST00000560202 AKR1A1P14550 325 aa12.41□□□□□ -0.42
USP3-218ENST00000560202 HSPA6P17066 643 aa12.41□□□□□ -0.42
USP3-218ENST00000560202 CCNE1P24864 410 aa12.41□□□□□ -0.42
USP3-218ENST00000560202 TARBP2Q15633 366 aaKnown RBP12.41□□□□□ -0.42
USP3-218ENST00000560202 ODR4Q5SWX8 454 aa12.41□□□□□ -0.42
USP3-218ENST00000560202 FAM102BQ5T8I3 360 aa12.41□□□□□ -0.42
USP3-218ENST00000560202 MCPH1Q8NEM0 835 aa12.41□□□□□ -0.42
USP3-218ENST00000560202 TRPV1Q8NER1 839 aa12.41□□□□□ -0.42
USP3-218ENST00000560202 ZNF296Q8WUU4 475 aaPredicted RBP12.41□□□□□ -0.42
USP3-218ENST00000560202 SCFD1Q8WVM8 642 aa12.41□□□□□ -0.42
USP3-218ENST00000560202 P2RX5Q93086 422 aa12.41□□□□□ -0.42
USP3-218ENST00000560202 CEP89Q96ST8 783 aa12.41□□□□□ -0.42
USP3-218ENST00000560202 MRPL44Q9H9J2 332 aaKnown RBP12.41□□□□□ -0.42
USP3-218ENST00000560202 ATP6V0A4Q9HBG4 840 aa12.41□□□□□ -0.42
USP3-218ENST00000560202 GPRC5CQ9NQ84 441 aa12.41□□□□□ -0.42
USP3-218ENST00000560202 LARSQ9P2J5 1176 aaKnown RBP12.41□□□□□ -0.42
USP3-218ENST00000560202 Q9Y3F1 56 aa12.41□□□□□ -0.42
USP3-218ENST00000560202 PPME1Q9Y570 386 aa12.41□□□□□ -0.42
USP3-218ENST00000560202 LOXHD1Q8IVV2 1947 aa12.4□□□□□ -0.42
USP3-218ENST00000560202 BICDL2A1A5D9 508 aa12.4□□□□□ -0.42
USP3-218ENST00000560202 TRIM49BA6NDI0 452 aa12.4□□□□□ -0.42
USP3-218ENST00000560202 A6NJR5 290 aa12.4□□□□□ -0.42
USP3-218ENST00000560202 KIF20AO95235 890 aa12.4□□□□□ -0.42
USP3-218ENST00000560202 PLS3P13797 630 aa12.4□□□□□ -0.42
USP3-218ENST00000560202 RFC5P40937 340 aa12.4□□□□□ -0.42
USP3-218ENST00000560202 CASP5P51878 434 aa12.4□□□□□ -0.42
USP3-218ENST00000560202 POLGP54098 1239 aaPredicted RBP12.4□□□□□ -0.42
USP3-218ENST00000560202 PMS1P54277 932 aaKnown RBP12.4□□□□□ -0.42
USP3-218ENST00000560202 MAP2K1Q02750 393 aaPredicted RBP12.4□□□□□ -0.42
USP3-218ENST00000560202 ARHGEF6Q15052 776 aa12.4□□□□□ -0.42
USP3-218ENST00000560202 DGKDQ16760 1214 aa12.4□□□□□ -0.42
USP3-218ENST00000560202 TPD52L1Q16890 204 aaPredicted RBP12.4□□□□□ -0.42
USP3-218ENST00000560202 CENPPQ6IPU0 288 aa12.4□□□□□ -0.42
USP3-218ENST00000560202 EPM2AIP1Q7L775 607 aaPredicted RBP12.4□□□□□ -0.42
USP3-218ENST00000560202 TLK2Q86UE8 772 aa12.4□□□□□ -0.42
USP3-218ENST00000560202 FAM178BQ8IXR5 827 aa12.4□□□□□ -0.42
USP3-218ENST00000560202 LENG1Q96BZ8 264 aaPredicted RBP12.4□□□□□ -0.42
USP3-218ENST00000560202 FIZ1Q96SL8 496 aa12.4□□□□□ -0.42
USP3-218ENST00000560202 C16orf70Q9BSU1 422 aa12.4□□□□□ -0.42
USP3-218ENST00000560202 SEMA6BQ9H3T3 888 aa12.4□□□□□ -0.42
USP3-218ENST00000560202 DHX33Q9H6R0 707 aaKnown RBP12.4□□□□□ -0.42
USP3-218ENST00000560202 XPNPEP1Q9NQW7 623 aa12.4□□□□□ -0.42
USP3-218ENST00000560202 HBP1O60381 514 aa12.39□□□□□ -0.43
USP3-218ENST00000560202 GCNT3O95395 438 aa12.39□□□□□ -0.43
USP3-218ENST00000560202 ZNF286BP0CG31 522 aa12.39□□□□□ -0.43
USP3-218ENST00000560202 MYBP10242 640 aa12.39□□□□□ -0.43
USP3-218ENST00000560202 ELNP15502 786 aa12.39□□□□□ -0.43
USP3-218ENST00000560202 NMT1P30419 496 aaKnown RBP12.39□□□□□ -0.43
USP3-218ENST00000560202 TRIM32Q13049 653 aa12.39□□□□□ -0.43
USP3-218ENST00000560202 EMC2Q15006 297 aa12.39□□□□□ -0.43
USP3-218ENST00000560202 ANKRD40Q6AI12 368 aa12.39□□□□□ -0.43
USP3-218ENST00000560202 TTI2Q6NXR4 508 aa12.39□□□□□ -0.43
USP3-218ENST00000560202 SARM1Q6SZW1 724 aa12.39□□□□□ -0.43
USP3-218ENST00000560202 ZNF720Q7Z2F6 126 aa12.39□□□□□ -0.43
USP3-218ENST00000560202 SLC7A3Q8WY07 619 aa12.39□□□□□ -0.43
USP3-218ENST00000560202 KIFAP3Q92845 792 aa12.39□□□□□ -0.43
USP3-218ENST00000560202 BEGAINQ9BUH8 593 aa12.39□□□□□ -0.43
USP3-218ENST00000560202 AP5M1Q9H0R1 490 aa12.39□□□□□ -0.43
USP3-218ENST00000560202 RNPEPQ9H4A4 650 aa12.39□□□□□ -0.43
USP3-218ENST00000560202 SAMSN1Q9NSI8 373 aaKnown RBP12.39□□□□□ -0.43
USP3-218ENST00000560202 ZNF215Q9UL58 517 aaPredicted RBP12.39□□□□□ -0.43
USP3-218ENST00000560202 TRPC6Q9Y210 931 aa12.39□□□□□ -0.43
USP3-218ENST00000560202 ADCY3O60266 1144 aa12.38□□□□□ -0.43
USP3-218ENST00000560202 DUSP11O75319 330 aaKnown RBP12.38□□□□□ -0.43
USP3-218ENST00000560202 MAFO75444 373 aaPredicted RBP12.38□□□□□ -0.43
USP3-218ENST00000560202 PRPF6O94906 941 aaKnown RBP12.38□□□□□ -0.43
USP3-218ENST00000560202 MAPTP10636 758 aaKnown RBP12.38□□□□□ -0.43
USP3-218ENST00000560202 ATP1A3P13637 1013 aa12.38□□□□□ -0.43
USP3-218ENST00000560202 ZNF18P17022 549 aa12.38□□□□□ -0.43
USP3-218ENST00000560202 MSNP26038 577 aaKnown RBP12.38□□□□□ -0.43
USP3-218ENST00000560202 SOX10P56693 466 aa12.38□□□□□ -0.43
USP3-218ENST00000560202 C1QTNF8P60827 252 aa12.38□□□□□ -0.43
USP3-218ENST00000560202 CACNB2Q08289 660 aaPredicted RBP12.38□□□□□ -0.43
USP3-218ENST00000560202 BMT2Q1RMZ1 405 aa12.38□□□□□ -0.43
USP3-218ENST00000560202 STXBP4Q6ZWJ1 553 aa12.38□□□□□ -0.43
USP3-218ENST00000560202 NELFCDQ8IXH7 590 aa12.38□□□□□ -0.43
USP3-218ENST00000560202 ZNF507Q8TCN5 953 aa12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms