RNA–Protein interactions for RNA: ENST00000556726.5

CCDC88C-211, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5

Gene CCDC88C, Length 3,617 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-211ENST00000556726 PLCB1Q9NQ66 1216 aa13.18□□□□□ -0.3
CCDC88C-211ENST00000556726 NAGPAQ9UK23 515 aa13.18□□□□□ -0.3
CCDC88C-211ENST00000556726 A0A1W2PQJ5 194 aa13.18□□□□□ -0.3
CCDC88C-211ENST00000556726 TARSL2A2RTX5 802 aaKnown RBP13.18□□□□□ -0.3
CCDC88C-211ENST00000556726 GRID2IPA4D2P6 1211 aa13.18□□□□□ -0.3
CCDC88C-211ENST00000556726 NPR1P16066 1061 aa13.18□□□□□ -0.3
CCDC88C-211ENST00000556726 PON1P27169 355 aa13.18□□□□□ -0.3
CCDC88C-211ENST00000556726 KCNJ1P48048 391 aa13.18□□□□□ -0.3
CCDC88C-211ENST00000556726 MAGOHP61326 146 aaKnown RBP13.18□□□□□ -0.3
CCDC88C-211ENST00000556726 ZKSCAN8Q15776 578 aaPredicted RBP13.18□□□□□ -0.3
CCDC88C-211ENST00000556726 HP1BP3Q5SSJ5 553 aaPredicted RBP13.18□□□□□ -0.3
CCDC88C-211ENST00000556726 PPP4R3AQ6IN85 833 aa13.18□□□□□ -0.3
CCDC88C-211ENST00000556726 SLC30A5Q8TAD4 765 aa13.18□□□□□ -0.3
CCDC88C-211ENST00000556726 RNPC3Q96LT9 517 aaKnown RBP13.18□□□□□ -0.3
CCDC88C-211ENST00000556726 RAVER2Q9HCJ3 691 aaKnown RBP13.18□□□□□ -0.3
CCDC88C-211ENST00000556726 TYW1Q9NV66 732 aaKnown RBP13.18□□□□□ -0.3
CCDC88C-211ENST00000556726 RASAL2Q9UJF2 1139 aa13.18□□□□□ -0.3
CCDC88C-211ENST00000556726 DAAM1Q9Y4D1 1078 aa13.18□□□□□ -0.3
CCDC88C-211ENST00000556726 ESYT2A0FGR8 921 aa13.18□□□□□ -0.3
CCDC88C-211ENST00000556726 CALCAP01258 141 aa13.18□□□□□ -0.3
CCDC88C-211ENST00000556726 FERP16591 822 aa13.18□□□□□ -0.3
CCDC88C-211ENST00000556726 NAB2Q15742 525 aa13.18□□□□□ -0.3
CCDC88C-211ENST00000556726 PNMA8AQ86V59 439 aaPredicted RBP13.18□□□□□ -0.3
CCDC88C-211ENST00000556726 TRIM59Q8IWR1 403 aa13.18□□□□□ -0.3
CCDC88C-211ENST00000556726 CHURC1Q8WUH1 139 aa13.18□□□□□ -0.3
CCDC88C-211ENST00000556726 ZNF341Q9BYN7 854 aa13.18□□□□□ -0.3
CCDC88C-211ENST00000556726 TAOK3Q9H2K8 898 aa13.18□□□□□ -0.3
CCDC88C-211ENST00000556726 GPRC5CQ9NQ84 441 aa13.18□□□□□ -0.3
CCDC88C-211ENST00000556726 ZNF277Q9NRM2 450 aaPredicted RBP13.18□□□□□ -0.3
CCDC88C-211ENST00000556726 EMSYQ7Z589 1322 aa13.17□□□□□ -0.3
CCDC88C-211ENST00000556726 SSU72P8A0A1W2PR75 194 aa13.17□□□□□ -0.3
CCDC88C-211ENST00000556726 IPO5O00410 1097 aaKnown RBP13.17□□□□□ -0.3
CCDC88C-211ENST00000556726 CTNNA2P26232 953 aa13.17□□□□□ -0.3
CCDC88C-211ENST00000556726 PRAMEF18Q5VWM3 479 aa13.17□□□□□ -0.3
CCDC88C-211ENST00000556726 KAZNQ674X7 775 aa13.17□□□□□ -0.3
CCDC88C-211ENST00000556726 APOBEC3HQ6NTF7 200 aaKnown RBP13.17□□□□□ -0.3
CCDC88C-211ENST00000556726 AADACL2Q6P093 401 aa13.17□□□□□ -0.3
CCDC88C-211ENST00000556726 PASD1Q8IV76 773 aa13.17□□□□□ -0.3
CCDC88C-211ENST00000556726 SYCE1Q8N0S2 351 aa13.17□□□□□ -0.3
CCDC88C-211ENST00000556726 RNF10Q8N5U6 811 aaKnown RBP13.17□□□□□ -0.3
CCDC88C-211ENST00000556726 HEMGNQ9BXL5 484 aa13.17□□□□□ -0.3
CCDC88C-211ENST00000556726 ACSL3O95573 720 aa13.17□□□□□ -0.3
CCDC88C-211ENST00000556726 FTLP02792 175 aaPredicted RBP13.17□□□□□ -0.3
CCDC88C-211ENST00000556726 IL1R1P14778 569 aa13.17□□□□□ -0.3
CCDC88C-211ENST00000556726 MTM1Q13496 603 aa13.17□□□□□ -0.3
CCDC88C-211ENST00000556726 DENND2CQ68D51 928 aa13.17□□□□□ -0.3
CCDC88C-211ENST00000556726 UBL4BQ8N7F7 174 aa13.17□□□□□ -0.3
CCDC88C-211ENST00000556726 SLC35G2Q8TBE7 412 aa13.17□□□□□ -0.3
CCDC88C-211ENST00000556726 POMGNT1Q8WZA1 660 aa13.17□□□□□ -0.3
CCDC88C-211ENST00000556726 ZNF653Q96CK0 615 aa13.17□□□□□ -0.3
CCDC88C-211ENST00000556726 TTYH3Q9C0H2 523 aa13.17□□□□□ -0.3
CCDC88C-211ENST00000556726 NID2Q14112 1375 aa13.17□□□□□ -0.3
CCDC88C-211ENST00000556726 M0R2N6 131 aa13.17□□□□□ -0.3
CCDC88C-211ENST00000556726 RGS16O15492 202 aaPredicted RBP13.17□□□□□ -0.3
CCDC88C-211ENST00000556726 ARP10275 920 aa13.17□□□□□ -0.3
CCDC88C-211ENST00000556726 USP11P51784 963 aa13.17□□□□□ -0.3
CCDC88C-211ENST00000556726 NPEPPSP55786 919 aa13.17□□□□□ -0.3
CCDC88C-211ENST00000556726 PADI6Q6TGC4 694 aa13.17□□□□□ -0.3
CCDC88C-211ENST00000556726 MDM1Q8TC05 714 aa13.17□□□□□ -0.3
CCDC88C-211ENST00000556726 AGBL1Q96MI9 1066 aa13.17□□□□□ -0.3
CCDC88C-211ENST00000556726 ZNF142P52746 1687 aaPredicted RBP13.16□□□□□ -0.3
CCDC88C-211ENST00000556726 CTNND1O60716 968 aaKnown RBP13.16□□□□□ -0.3
CCDC88C-211ENST00000556726 HIP1RO75146 1068 aa13.16□□□□□ -0.3
CCDC88C-211ENST00000556726 RUFY4Q6ZNE9 571 aa13.16□□□□□ -0.3
CCDC88C-211ENST00000556726 B4GALNT4Q76KP1 1039 aa13.16□□□□□ -0.3
CCDC88C-211ENST00000556726 MMGT1Q8N4V1 131 aa13.16□□□□□ -0.3
CCDC88C-211ENST00000556726 NACC1Q96RE7 527 aa13.16□□□□□ -0.3
CCDC88C-211ENST00000556726 FNBP1Q96RU3 617 aa13.16□□□□□ -0.3
CCDC88C-211ENST00000556726 FMO2Q99518 471 aa13.16□□□□□ -0.3
CCDC88C-211ENST00000556726 TMEM39BQ9GZU3 492 aa13.16□□□□□ -0.3
CCDC88C-211ENST00000556726 MTRF1LQ9UGC7 380 aaKnown RBP13.16□□□□□ -0.3
CCDC88C-211ENST00000556726 PARP4Q9UKK3 1724 aaKnown RBP13.16□□□□□ -0.3
CCDC88C-211ENST00000556726 ANKRD62A6NC57 917 aa13.16□□□□□ -0.3
CCDC88C-211ENST00000556726 IFNB1P01574 187 aa13.16□□□□□ -0.3
CCDC88C-211ENST00000556726 SOX10P56693 466 aa13.16□□□□□ -0.3
CCDC88C-211ENST00000556726 SEPT7Q16181 437 aaKnown RBP13.16□□□□□ -0.3
CCDC88C-211ENST00000556726 PLA2G4FQ68DD2 849 aa13.16□□□□□ -0.3
CCDC88C-211ENST00000556726 RINT1Q6NUQ1 792 aa13.16□□□□□ -0.3
CCDC88C-211ENST00000556726 USP38Q8NB14 1042 aa13.16□□□□□ -0.3
CCDC88C-211ENST00000556726 TAF1DQ9H5J8 278 aaPredicted RBP13.16□□□□□ -0.3
CCDC88C-211ENST00000556726 ANKFY1Q9P2R3 1169 aa13.16□□□□□ -0.3
CCDC88C-211ENST00000556726 MRPL11Q9Y3B7 192 aaKnown RBP13.16□□□□□ -0.3
CCDC88C-211ENST00000556726 SPEF2Q9C093 1822 aa13.16□□□□□ -0.3
CCDC88C-211ENST00000556726 HNRNPDLO14979 420 aaKnown RBP13.15□□□□□ -0.3
CCDC88C-211ENST00000556726 RPA1P27694 616 aa13.15□□□□□ -0.3
CCDC88C-211ENST00000556726 MXI1P50539 228 aa13.15□□□□□ -0.3
CCDC88C-211ENST00000556726 DR1Q01658 176 aa13.15□□□□□ -0.3
CCDC88C-211ENST00000556726 LRRC14Q15048 493 aa13.15□□□□□ -0.3
CCDC88C-211ENST00000556726 ARSHQ5FYA8 562 aa13.15□□□□□ -0.3
CCDC88C-211ENST00000556726 EEPD1Q7L9B9 569 aa13.15□□□□□ -0.3
CCDC88C-211ENST00000556726 RPUSD2Q8IZ73 545 aaKnown RBP13.15□□□□□ -0.3
CCDC88C-211ENST00000556726 INTS2Q9H0H0 1204 aaKnown RBP13.15□□□□□ -0.3
CCDC88C-211ENST00000556726 TRPC5Q9UL62 973 aaPredicted RBP13.15□□□□□ -0.3
CCDC88C-211ENST00000556726 MTUS1Q9ULD2 1270 aa13.15□□□□□ -0.3
CCDC88C-211ENST00000556726 A0A1W2PRG0 241 aa13.15□□□□□ -0.3
CCDC88C-211ENST00000556726 AP3B2Q13367 1082 aa13.15□□□□□ -0.3
CCDC88C-211ENST00000556726 DGKZQ13574 1117 aa13.15□□□□□ -0.3
CCDC88C-211ENST00000556726 ZNF394Q53GI3 561 aa13.15□□□□□ -0.3
CCDC88C-211ENST00000556726 ALS2CLQ60I27 953 aa13.15□□□□□ -0.3
CCDC88C-211ENST00000556726 PODNQ7Z5L7 613 aa13.15□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms