RNA–Protein interactions for RNA: ENST00000552338.5

LIMA1-211, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 555 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-211ENST00000552338 ANKLE1Q8NAG6 615 aa10.65□□□□□ -0.7
LIMA1-211ENST00000552338 MCPH1Q8NEM0 835 aa10.65□□□□□ -0.7
LIMA1-211ENST00000552338 LENG1Q96BZ8 264 aaPredicted RBP10.65□□□□□ -0.7
LIMA1-211ENST00000552338 CEP170P1Q96L14 293 aa10.65□□□□□ -0.7
LIMA1-211ENST00000552338 PLIN2Q99541 437 aa10.65□□□□□ -0.7
LIMA1-211ENST00000552338 XPNPEP1Q9NQW7 623 aa10.65□□□□□ -0.7
LIMA1-211ENST00000552338 BMP2KQ9NSY1 1161 aaPredicted RBP10.65□□□□□ -0.7
LIMA1-211ENST00000552338 SEL1LQ9UBV2 794 aa10.65□□□□□ -0.7
LIMA1-211ENST00000552338 PHF24Q9UPV7 400 aa10.65□□□□□ -0.7
LIMA1-211ENST00000552338 PCDHA2Q9Y5H9 948 aa10.65□□□□□ -0.7
LIMA1-211ENST00000552338 HTTP42858 3142 aa10.64□□□□□ -0.71
LIMA1-211ENST00000552338 SIP14410 1827 aa10.64□□□□□ -0.71
LIMA1-211ENST00000552338 ARHGEF35A5YM69 484 aa10.64□□□□□ -0.71
LIMA1-211ENST00000552338 INSRRP14616 1297 aa10.64□□□□□ -0.71
LIMA1-211ENST00000552338 GJA8P48165 433 aa10.64□□□□□ -0.71
LIMA1-211ENST00000552338 PSEN2P49810 448 aa10.64□□□□□ -0.71
LIMA1-211ENST00000552338 NPEPPSP55786 919 aa10.64□□□□□ -0.71
LIMA1-211ENST00000552338 ZNF445P59923 1031 aa10.64□□□□□ -0.71
LIMA1-211ENST00000552338 BEX3Q00994 111 aa10.64□□□□□ -0.71
LIMA1-211ENST00000552338 MFSD10Q14728 455 aa10.64□□□□□ -0.71
LIMA1-211ENST00000552338 KIAA0753Q2KHM9 967 aa10.64□□□□□ -0.71
LIMA1-211ENST00000552338 XKR9Q5GH70 373 aa10.64□□□□□ -0.71
LIMA1-211ENST00000552338 MARCH8Q5T0T0 291 aa10.64□□□□□ -0.71
LIMA1-211ENST00000552338 C1orf53Q5VUE5 145 aa10.64□□□□□ -0.71
LIMA1-211ENST00000552338 FOXR2Q6PJQ5 311 aa10.64□□□□□ -0.71
LIMA1-211ENST00000552338 RPAINQ86UA6 219 aa10.64□□□□□ -0.71
LIMA1-211ENST00000552338 GPBP1Q86WP2 473 aa10.64□□□□□ -0.71
LIMA1-211ENST00000552338 DAW1Q8N136 415 aa10.64□□□□□ -0.71
LIMA1-211ENST00000552338 FIZ1Q96SL8 496 aa10.64□□□□□ -0.71
LIMA1-211ENST00000552338 RUSC1Q9BVN2 902 aa10.64□□□□□ -0.71
LIMA1-211ENST00000552338 ST6GALNAC4Q9H4F1 302 aa10.64□□□□□ -0.71
LIMA1-211ENST00000552338 OLFML3Q9NRN5 406 aa10.64□□□□□ -0.71
LIMA1-211ENST00000552338 A0A087WWV3 80 aa10.63□□□□□ -0.71
LIMA1-211ENST00000552338 ASAP2O43150 1006 aa10.63□□□□□ -0.71
LIMA1-211ENST00000552338 SORBS3O60504 671 aa10.63□□□□□ -0.71
LIMA1-211ENST00000552338 SMC2O95347 1197 aa10.63□□□□□ -0.71
LIMA1-211ENST00000552338 C22orf31O95567 290 aa10.63□□□□□ -0.71
LIMA1-211ENST00000552338 RPLP2P05387 115 aaKnown RBP10.63□□□□□ -0.71
LIMA1-211ENST00000552338 PRR29P0C7W0 189 aa10.63□□□□□ -0.71
LIMA1-211ENST00000552338 ZNF286BP0CG31 522 aa10.63□□□□□ -0.71
LIMA1-211ENST00000552338 GNAT1P11488 350 aa10.63□□□□□ -0.71
LIMA1-211ENST00000552338 GAP43P17677 238 aa10.63□□□□□ -0.71
LIMA1-211ENST00000552338 ARL2P36404 184 aa10.63□□□□□ -0.71
LIMA1-211ENST00000552338 AFMP43652 599 aa10.63□□□□□ -0.71
LIMA1-211ENST00000552338 MNX1P50219 401 aaPredicted RBP10.63□□□□□ -0.71
LIMA1-211ENST00000552338 ACLYP53396 1101 aa10.63□□□□□ -0.71
LIMA1-211ENST00000552338 CDC42EP1Q00587 391 aa10.63□□□□□ -0.71
LIMA1-211ENST00000552338 PNOCQ13519 176 aa10.63□□□□□ -0.71
LIMA1-211ENST00000552338 MORC3Q14149 939 aa10.63□□□□□ -0.71
LIMA1-211ENST00000552338 ZRSR1Q15695 479 aaKnown RBP10.63□□□□□ -0.71
LIMA1-211ENST00000552338 IER5Q5VY09 327 aa10.63□□□□□ -0.71
LIMA1-211ENST00000552338 IFNLR1Q8IU57 520 aaPredicted RBP10.63□□□□□ -0.71
LIMA1-211ENST00000552338 CCDC65Q8IXS2 484 aa10.63□□□□□ -0.71
LIMA1-211ENST00000552338 SLC17A8Q8NDX2 589 aa10.63□□□□□ -0.71
LIMA1-211ENST00000552338 TCP11Q8WWU5 503 aa10.63□□□□□ -0.71
LIMA1-211ENST00000552338 KIFAP3Q92845 792 aa10.63□□□□□ -0.71
LIMA1-211ENST00000552338 SMARCE1Q969G3 411 aa10.63□□□□□ -0.71
LIMA1-211ENST00000552338 REEP2Q9BRK0 252 aa10.63□□□□□ -0.71
LIMA1-211ENST00000552338 STRA6Q9BX79 667 aa10.63□□□□□ -0.71
LIMA1-211ENST00000552338 RNF208Q9H0X6 261 aa10.63□□□□□ -0.71
LIMA1-211ENST00000552338 RMND1Q9NWS8 449 aa10.63□□□□□ -0.71
LIMA1-211ENST00000552338 SEPT9Q9UHD8 586 aaPredicted RBP10.63□□□□□ -0.71
LIMA1-211ENST00000552338 GTF2IRD1Q9UHL9 959 aa10.63□□□□□ -0.71
LIMA1-211ENST00000552338 COL4A3BPQ9Y5P4 624 aa10.63□□□□□ -0.71
LIMA1-211ENST00000552338 GRIN2DO15399 1336 aa10.62□□□□□ -0.71
LIMA1-211ENST00000552338 SMIM35A0A1B0GVV1 85 aa10.62□□□□□ -0.71
LIMA1-211ENST00000552338 RPN1P04843 607 aaKnown RBP10.62□□□□□ -0.71
LIMA1-211ENST00000552338 SMIM10L2AP0DMW4 78 aa10.62□□□□□ -0.71
LIMA1-211ENST00000552338 SMIM10L2BP0DMW5 78 aa10.62□□□□□ -0.71
LIMA1-211ENST00000552338 COL6A1P12109 1028 aa10.62□□□□□ -0.71
LIMA1-211ENST00000552338 ABCD1P33897 745 aa10.62□□□□□ -0.71
LIMA1-211ENST00000552338 PPP1R2P41236 205 aa10.62□□□□□ -0.71
LIMA1-211ENST00000552338 CDK7P50613 346 aa10.62□□□□□ -0.71
LIMA1-211ENST00000552338 MKRN4PQ13434 485 aaPredicted RBP10.62□□□□□ -0.71
LIMA1-211ENST00000552338 GRIK4Q16099 956 aa10.62□□□□□ -0.71
LIMA1-211ENST00000552338 CAMK4Q16566 473 aa10.62□□□□□ -0.71
LIMA1-211ENST00000552338 ZSCAN23Q3MJ62 389 aa10.62□□□□□ -0.71
LIMA1-211ENST00000552338 KMT5BQ4FZB7 885 aa10.62□□□□□ -0.71
LIMA1-211ENST00000552338 ZNF658Q5TYW1 1059 aaPredicted RBP10.62□□□□□ -0.71
LIMA1-211ENST00000552338 PLA2G4FQ68DD2 849 aa10.62□□□□□ -0.71
LIMA1-211ENST00000552338 MTHFD1LQ6UB35 978 aa10.62□□□□□ -0.71
LIMA1-211ENST00000552338 CXCL17Q6UXB2 119 aa10.62□□□□□ -0.71
LIMA1-211ENST00000552338 CKAP2LQ8IYA6 745 aa10.62□□□□□ -0.71
LIMA1-211ENST00000552338 GRAMD1CQ8IYS0 662 aa10.62□□□□□ -0.71
LIMA1-211ENST00000552338 U2AF1L4Q8WU68 220 aaKnown RBP10.62□□□□□ -0.71
LIMA1-211ENST00000552338 TMEM174Q8WUU8 243 aa10.62□□□□□ -0.71
LIMA1-211ENST00000552338 SPIRE2Q8WWL2 714 aa10.62□□□□□ -0.71
LIMA1-211ENST00000552338 SLC7A3Q8WY07 619 aa10.62□□□□□ -0.71
LIMA1-211ENST00000552338 STAMQ92783 540 aa10.62□□□□□ -0.71
LIMA1-211ENST00000552338 DRC1Q96MC2 740 aa10.62□□□□□ -0.71
LIMA1-211ENST00000552338 NFKBIZQ9BYH8 718 aa10.62□□□□□ -0.71
LIMA1-211ENST00000552338 ATP6V0A4Q9HBG4 840 aa10.62□□□□□ -0.71
LIMA1-211ENST00000552338 PARVGQ9HBI0 331 aa10.62□□□□□ -0.71
LIMA1-211ENST00000552338 LARSQ9P2J5 1176 aaKnown RBP10.62□□□□□ -0.71
LIMA1-211ENST00000552338 MAN1B1Q9UKM7 699 aa10.62□□□□□ -0.71
LIMA1-211ENST00000552338 KIAA0100Q14667 2235 aaKnown RBP10.62□□□□□ -0.71
LIMA1-211ENST00000552338 TMEM150BA6NC51 233 aa10.61□□□□□ -0.71
LIMA1-211ENST00000552338 HIP1RO75146 1068 aa10.61□□□□□ -0.71
LIMA1-211ENST00000552338 PPP1R37O75864 691 aa10.61□□□□□ -0.71
LIMA1-211ENST00000552338 CAVIN2O95810 425 aa10.61□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms