RNA–Protein interactions for RNA: ENST00000546820.5

PTCH1-213, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 864 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-213ENST00000546820 RSPH10B2B2RC85 870 aa15.33■□□□□ 0.04
PTCH1-213ENST00000546820 IQCF3P0C7M6 154 aa15.33■□□□□ 0.04
PTCH1-213ENST00000546820 RSPH10BP0C881 870 aa15.33■□□□□ 0.04
PTCH1-213ENST00000546820 CYP2C18P33260 490 aa15.33■□□□□ 0.04
PTCH1-213ENST00000546820 RFC2P35250 354 aa15.33■□□□□ 0.04
PTCH1-213ENST00000546820 GRB10Q13322 594 aa15.33■□□□□ 0.04
PTCH1-213ENST00000546820 TRIM71Q2Q1W2 868 aaKnown RBP15.33■□□□□ 0.04
PTCH1-213ENST00000546820 ADALQ6DHV7 355 aa15.33■□□□□ 0.04
PTCH1-213ENST00000546820 CCDC73Q6ZRK6 1079 aa15.33■□□□□ 0.04
PTCH1-213ENST00000546820 RPUSD2Q8IZ73 545 aaKnown RBP15.33■□□□□ 0.04
PTCH1-213ENST00000546820 KIAA0319LQ8IZA0 1049 aa15.33■□□□□ 0.04
PTCH1-213ENST00000546820 DHX38Q92620 1227 aaKnown RBP15.33■□□□□ 0.04
PTCH1-213ENST00000546820 PNMA5Q96PV4 448 aa15.33■□□□□ 0.04
PTCH1-213ENST00000546820 CEP89Q96ST8 783 aa15.33■□□□□ 0.04
PTCH1-213ENST00000546820 PLIN2Q99541 437 aa15.33■□□□□ 0.04
PTCH1-213ENST00000546820 MTRQ99707 1265 aa15.33■□□□□ 0.04
PTCH1-213ENST00000546820 BHMT2Q9H2M3 363 aa15.33■□□□□ 0.04
PTCH1-213ENST00000546820 DHX33Q9H6R0 707 aaKnown RBP15.33■□□□□ 0.04
PTCH1-213ENST00000546820 AKT3Q9Y243 479 aa15.33■□□□□ 0.04
PTCH1-213ENST00000546820 ALPK3Q96L96 1907 aa15.33■□□□□ 0.04
PTCH1-213ENST00000546820 IGKV6-21A0A0C4DH24 114 aa15.32■□□□□ 0.04
PTCH1-213ENST00000546820 E9PMD0 336 aa15.32■□□□□ 0.04
PTCH1-213ENST00000546820 H0YGN5 161 aa15.32■□□□□ 0.04
PTCH1-213ENST00000546820 ASAP2O43150 1006 aa15.32■□□□□ 0.04
PTCH1-213ENST00000546820 CCL23P55773 120 aa15.32■□□□□ 0.04
PTCH1-213ENST00000546820 PPIGQ13427 754 aaKnown RBP eCLIP15.32■□□□□ 0.04
PTCH1-213ENST00000546820 KARSQ15046 597 aaKnown RBP15.32■□□□□ 0.04
PTCH1-213ENST00000546820 AXDND1Q5T1B0 1012 aaPredicted RBP15.32■□□□□ 0.04
PTCH1-213ENST00000546820 ZNF618Q5T7W0 954 aa15.32■□□□□ 0.04
PTCH1-213ENST00000546820 USP49Q70CQ1 688 aa15.32■□□□□ 0.04
PTCH1-213ENST00000546820 LRRC8DQ7L1W4 858 aa15.32■□□□□ 0.04
PTCH1-213ENST00000546820 MCPH1Q8NEM0 835 aa15.32■□□□□ 0.04
PTCH1-213ENST00000546820 BADQ92934 168 aa15.32■□□□□ 0.04
PTCH1-213ENST00000546820 ZBTB10Q96DT7 871 aa15.32■□□□□ 0.04
PTCH1-213ENST00000546820 PYM1Q9BRP8 204 aaKnown RBP15.32■□□□□ 0.04
PTCH1-213ENST00000546820 ATP6V0A4Q9HBG4 840 aa15.32■□□□□ 0.04
PTCH1-213ENST00000546820 SUCLA2Q9P2R7 463 aaPredicted RBP15.32■□□□□ 0.04
PTCH1-213ENST00000546820 DNAH12Q6ZR08 3092 aa15.31■□□□□ 0.04
PTCH1-213ENST00000546820 SSBP05455 408 aaKnown RBP eCLIP15.31■□□□□ 0.04
PTCH1-213ENST00000546820 PLA2G4BP0C869 781 aa15.31■□□□□ 0.04
PTCH1-213ENST00000546820 CYP11B2P19099 503 aa15.31■□□□□ 0.04
PTCH1-213ENST00000546820 PLCG1P19174 1290 aa15.31■□□□□ 0.04
PTCH1-213ENST00000546820 CLCN3P51790 818 aa15.31■□□□□ 0.04
PTCH1-213ENST00000546820 MRPS6P82932 125 aaKnown RBP15.31■□□□□ 0.04
PTCH1-213ENST00000546820 FPGSQ05932 587 aa15.31■□□□□ 0.04
PTCH1-213ENST00000546820 EMC2Q15006 297 aa15.31■□□□□ 0.04
PTCH1-213ENST00000546820 TMEM119Q4V9L6 283 aa15.31■□□□□ 0.04
PTCH1-213ENST00000546820 FAM26DQ5JW98 314 aa15.31■□□□□ 0.04
PTCH1-213ENST00000546820 PADI6Q6TGC4 694 aa15.31■□□□□ 0.04
PTCH1-213ENST00000546820 LRRC71Q8N4P6 559 aa15.31■□□□□ 0.04
PTCH1-213ENST00000546820 SYT2Q8N9I0 419 aaPredicted RBP15.31■□□□□ 0.04
PTCH1-213ENST00000546820 PSPC1Q8WXF1 523 aaKnown RBP15.31■□□□□ 0.04
PTCH1-213ENST00000546820 WNT8BQ93098 351 aa15.31■□□□□ 0.04
PTCH1-213ENST00000546820 CHAMP1Q96JM3 812 aa15.31■□□□□ 0.04
PTCH1-213ENST00000546820 PANK2Q9BZ23 570 aa15.31■□□□□ 0.04
PTCH1-213ENST00000546820 CELF4Q9BZC1 486 aaKnown RBP15.31■□□□□ 0.04
PTCH1-213ENST00000546820 STK17AQ9UEE5 414 aa15.31■□□□□ 0.04
PTCH1-213ENST00000546820 USO1O60763 962 aaKnown RBP15.3■□□□□ 0.04
PTCH1-213ENST00000546820 CMA1P23946 247 aa15.3■□□□□ 0.04
PTCH1-213ENST00000546820 ITGB8P26012 769 aa15.3■□□□□ 0.04
PTCH1-213ENST00000546820 STAT6P42226 847 aa15.3■□□□□ 0.04
PTCH1-213ENST00000546820 MDM2Q00987 491 aaPredicted RBP15.3■□□□□ 0.04
PTCH1-213ENST00000546820 MXD4Q14582 209 aaPredicted RBP15.3■□□□□ 0.04
PTCH1-213ENST00000546820 UMODL1Q5DID0 1318 aa15.3■□□□□ 0.04
PTCH1-213ENST00000546820 ODR4Q5SWX8 454 aa15.3■□□□□ 0.04
PTCH1-213ENST00000546820 RESP18Q5W5W9 173 aa15.3■□□□□ 0.04
PTCH1-213ENST00000546820 SHC4Q6S5L8 630 aa15.3■□□□□ 0.04
PTCH1-213ENST00000546820 LINC01465Q8N7H1 131 aa15.3■□□□□ 0.04
PTCH1-213ENST00000546820 IQUBQ8NA54 791 aa15.3■□□□□ 0.04
PTCH1-213ENST00000546820 USP38Q8NB14 1042 aa15.3■□□□□ 0.04
PTCH1-213ENST00000546820 TIPINQ9BVW5 301 aa15.3■□□□□ 0.04
PTCH1-213ENST00000546820 KCND2Q9NZV8 630 aa15.3■□□□□ 0.04
PTCH1-213ENST00000546820 TRPV2Q9Y5S1 764 aa15.3■□□□□ 0.04
PTCH1-213ENST00000546820 CDY2AQ9Y6F7 541 aa15.3■□□□□ 0.04
PTCH1-213ENST00000546820 SQORQ9Y6N5 450 aa15.3■□□□□ 0.04
PTCH1-213ENST00000546820 EVPLQ92817 2033 aa15.29■□□□□ 0.04
PTCH1-213ENST00000546820 TCHHQ07283 1943 aa15.29■□□□□ 0.04
PTCH1-213ENST00000546820 CHRNA1P02708 482 aa15.29■□□□□ 0.04
PTCH1-213ENST00000546820 VTNP04004 478 aa15.29■□□□□ 0.04
PTCH1-213ENST00000546820 PFKMP08237 780 aa15.29■□□□□ 0.04
PTCH1-213ENST00000546820 CTSHP09668 335 aa15.29■□□□□ 0.04
PTCH1-213ENST00000546820 CSF2RAP15509 400 aa15.29■□□□□ 0.04
PTCH1-213ENST00000546820 CRYBB1P53674 252 aaPredicted RBP15.29■□□□□ 0.04
PTCH1-213ENST00000546820 NLRP11P59045 1033 aaKnown RBP15.29■□□□□ 0.04
PTCH1-213ENST00000546820 TMEM62Q0P6H9 643 aa15.29■□□□□ 0.04
PTCH1-213ENST00000546820 RINT1Q6NUQ1 792 aa15.29■□□□□ 0.04
PTCH1-213ENST00000546820 FAM43BQ6ZT52 329 aaPredicted RBP15.29■□□□□ 0.04
PTCH1-213ENST00000546820 SV2BQ7L1I2 683 aa15.29■□□□□ 0.04
PTCH1-213ENST00000546820 KCNK18Q7Z418 384 aa15.29■□□□□ 0.04
PTCH1-213ENST00000546820 RHPN2Q8IUC4 686 aa15.29■□□□□ 0.04
PTCH1-213ENST00000546820 PDILTQ8N807 584 aa15.29■□□□□ 0.04
PTCH1-213ENST00000546820 PRPF31Q8WWY3 499 aaKnown RBP15.29■□□□□ 0.04
PTCH1-213ENST00000546820 LARP4BQ92615 738 aaKnown RBP15.29■□□□□ 0.04
PTCH1-213ENST00000546820 RAD54LQ92698 747 aa15.29■□□□□ 0.04
PTCH1-213ENST00000546820 TMEM143Q96AN5 459 aa15.29■□□□□ 0.04
PTCH1-213ENST00000546820 SCLYQ96I15 445 aa15.29■□□□□ 0.04
PTCH1-213ENST00000546820 SCLT1Q96NL6 688 aa15.29■□□□□ 0.04
PTCH1-213ENST00000546820 INO80BQ9C086 356 aaPredicted RBP15.29■□□□□ 0.04
PTCH1-213ENST00000546820 LRRC27Q9C0I9 530 aa15.29■□□□□ 0.04
PTCH1-213ENST00000546820 WNT8AQ9H1J5 351 aa15.29■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms