RNA–Protein interactions for RNA: ENST00000540304.5

CLIP1-212, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 5

Gene CLIP1, Length 2,554 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-212ENST00000540304 ATP9AO75110 1047 aa10.6□□□□□ -0.71
CLIP1-212ENST00000540304 NDUFA10O95299 355 aa10.6□□□□□ -0.71
CLIP1-212ENST00000540304 RPL13P26373 211 aaKnown RBP10.6□□□□□ -0.71
CLIP1-212ENST00000540304 PLS1Q14651 629 aa10.6□□□□□ -0.71
CLIP1-212ENST00000540304 PADI6Q6TGC4 694 aa10.6□□□□□ -0.71
CLIP1-212ENST00000540304 FRMD5Q7Z6J6 570 aa10.6□□□□□ -0.71
CLIP1-212ENST00000540304 FAM178BQ8IXR5 827 aa10.6□□□□□ -0.71
CLIP1-212ENST00000540304 MNS1Q8NEH6 495 aa10.6□□□□□ -0.71
CLIP1-212ENST00000540304 A1CFQ9NQ94 594 aaKnown RBP10.6□□□□□ -0.71
CLIP1-212ENST00000540304 FAM207AQ9NSI2 230 aaPredicted RBP10.6□□□□□ -0.71
CLIP1-212ENST00000540304 EPN1Q9Y6I3 576 aaPredicted RBP10.6□□□□□ -0.71
CLIP1-212ENST00000540304 HIP1RO75146 1068 aa10.59□□□□□ -0.71
CLIP1-212ENST00000540304 NR3C1P04150 777 aa10.59□□□□□ -0.71
CLIP1-212ENST00000540304 NMT1P30419 496 aaKnown RBP10.59□□□□□ -0.71
CLIP1-212ENST00000540304 CDK17Q00537 523 aa10.59□□□□□ -0.71
CLIP1-212ENST00000540304 MAP9Q49MG5 647 aa10.59□□□□□ -0.71
CLIP1-212ENST00000540304 RDM1Q8NG50 284 aa10.59□□□□□ -0.71
CLIP1-212ENST00000540304 INPP4AQ96PE3 977 aaPredicted RBP10.59□□□□□ -0.71
CLIP1-212ENST00000540304 EDEM3Q9BZQ6 932 aa10.59□□□□□ -0.71
CLIP1-212ENST00000540304 ZMYM2Q9UBW7 1377 aa10.59□□□□□ -0.71
CLIP1-212ENST00000540304 WDR81Q562E7 1941 aa10.59□□□□□ -0.71
CLIP1-212ENST00000540304 EPHB6O15197 1021 aa10.59□□□□□ -0.71
CLIP1-212ENST00000540304 SLC16A3O15427 465 aaKnown RBP10.59□□□□□ -0.71
CLIP1-212ENST00000540304 STAM2O75886 525 aa10.59□□□□□ -0.71
CLIP1-212ENST00000540304 CCNE2O96020 404 aa10.59□□□□□ -0.71
CLIP1-212ENST00000540304 HNRNPH3P31942 346 aaKnown RBP10.59□□□□□ -0.71
CLIP1-212ENST00000540304 RARRES1P49788 294 aa10.59□□□□□ -0.71
CLIP1-212ENST00000540304 PSMC5P62195 406 aa10.59□□□□□ -0.71
CLIP1-212ENST00000540304 PPP2R3AQ06190 1150 aa10.59□□□□□ -0.71
CLIP1-212ENST00000540304 NFIL3Q16649 462 aa10.59□□□□□ -0.71
CLIP1-212ENST00000540304 C11orf91Q3C1V1 193 aa10.59□□□□□ -0.71
CLIP1-212ENST00000540304 ARHGAP29Q52LW3 1261 aa10.59□□□□□ -0.71
CLIP1-212ENST00000540304 ODR4Q5SWX8 454 aa10.59□□□□□ -0.71
CLIP1-212ENST00000540304 TREML2Q5T2D2 321 aa10.59□□□□□ -0.71
CLIP1-212ENST00000540304 ZNF720Q7Z2F6 126 aa10.59□□□□□ -0.71
CLIP1-212ENST00000540304 C4orf19Q8IY42 314 aa10.59□□□□□ -0.71
CLIP1-212ENST00000540304 CCDC170Q8IYT3 715 aa10.59□□□□□ -0.71
CLIP1-212ENST00000540304 LRRN4CLQ8ND94 238 aa10.59□□□□□ -0.71
CLIP1-212ENST00000540304 CHST13Q8NET6 341 aa10.59□□□□□ -0.71
CLIP1-212ENST00000540304 NEK11Q8NG66 645 aa10.59□□□□□ -0.71
CLIP1-212ENST00000540304 FIZ1Q96SL8 496 aa10.59□□□□□ -0.71
CLIP1-212ENST00000540304 IRX2Q9BZI1 471 aaPredicted RBP10.59□□□□□ -0.71
CLIP1-212ENST00000540304 ARMCX3Q9UH62 379 aaPredicted RBP10.59□□□□□ -0.71
CLIP1-212ENST00000540304 KIF5CO60282 957 aa10.58□□□□□ -0.72
CLIP1-212ENST00000540304 SLU7O95391 586 aaKnown RBP10.58□□□□□ -0.72
CLIP1-212ENST00000540304 YWHABP31946 246 aaKnown RBP10.58□□□□□ -0.72
CLIP1-212ENST00000540304 NF2P35240 595 aa10.58□□□□□ -0.72
CLIP1-212ENST00000540304 CYLC1P35663 651 aaPredicted RBP10.58□□□□□ -0.72
CLIP1-212ENST00000540304 KCNA1Q09470 495 aa10.58□□□□□ -0.72
CLIP1-212ENST00000540304 KCNMA1Q12791 1236 aa10.58□□□□□ -0.72
CLIP1-212ENST00000540304 MAPK7Q13164 816 aa10.58□□□□□ -0.72
CLIP1-212ENST00000540304 ZNF746Q6NUN9 644 aaPredicted RBP10.58□□□□□ -0.72
CLIP1-212ENST00000540304 DPY19L2Q6NUT2 758 aa10.58□□□□□ -0.72
CLIP1-212ENST00000540304 USP50Q70EL3 339 aaPredicted RBP10.58□□□□□ -0.72
CLIP1-212ENST00000540304 CCDC155Q8N6L0 562 aa10.58□□□□□ -0.72
CLIP1-212ENST00000540304 SMCR8Q8TEV9 937 aaPredicted RBP10.58□□□□□ -0.72
CLIP1-212ENST00000540304 L3MBTL3Q96JM7 780 aaPredicted RBP10.58□□□□□ -0.72
CLIP1-212ENST00000540304 CDHR1Q96JP9 859 aa10.58□□□□□ -0.72
CLIP1-212ENST00000540304 CCDC43Q96MW1 224 aaKnown RBP10.58□□□□□ -0.72
CLIP1-212ENST00000540304 WDR24Q96S15 920 aa10.58□□□□□ -0.72
CLIP1-212ENST00000540304 SENP7Q9BQF6 1050 aa10.58□□□□□ -0.72
CLIP1-212ENST00000540304 PLAGL2Q9UPG8 496 aa10.58□□□□□ -0.72
CLIP1-212ENST00000540304 TGFB1I1O43294 461 aa10.58□□□□□ -0.72
CLIP1-212ENST00000540304 EPB41P11171 864 aaKnown RBP10.58□□□□□ -0.72
CLIP1-212ENST00000540304 PPATQ06203 517 aa10.58□□□□□ -0.72
CLIP1-212ENST00000540304 ZC2HC1CQ53FD0 456 aaPredicted RBP10.58□□□□□ -0.72
CLIP1-212ENST00000540304 LBX2Q6XYB7 198 aa10.58□□□□□ -0.72
CLIP1-212ENST00000540304 DAW1Q8N136 415 aa10.58□□□□□ -0.72
CLIP1-212ENST00000540304 PROCA1Q8NCQ7 364 aaPredicted RBP10.58□□□□□ -0.72
CLIP1-212ENST00000540304 ERO1AQ96HE7 468 aa10.58□□□□□ -0.72
CLIP1-212ENST00000540304 TIPINQ9BVW5 301 aa10.58□□□□□ -0.72
CLIP1-212ENST00000540304 MOV10L1Q9BXT6 1211 aaKnown RBP10.58□□□□□ -0.72
CLIP1-212ENST00000540304 NHEJ1Q9H9Q4 299 aaPredicted RBP10.58□□□□□ -0.72
CLIP1-212ENST00000540304 ELP3Q9H9T3 547 aa10.58□□□□□ -0.72
CLIP1-212ENST00000540304 METTL14Q9HCE5 456 aaKnown RBP10.58□□□□□ -0.72
CLIP1-212ENST00000540304 ZNF215Q9UL58 517 aaPredicted RBP10.58□□□□□ -0.72
CLIP1-212ENST00000540304 REXO2Q9Y3B8 237 aaKnown RBP10.58□□□□□ -0.72
CLIP1-212ENST00000540304 PCDHB13Q9Y5F0 798 aa10.58□□□□□ -0.72
CLIP1-212ENST00000540304 A0A0G2JLL6 359 aaPredicted RBP10.57□□□□□ -0.72
CLIP1-212ENST00000540304 AKAP3O75969 853 aa10.57□□□□□ -0.72
CLIP1-212ENST00000540304 URI1O94763 535 aaPredicted RBP10.57□□□□□ -0.72
CLIP1-212ENST00000540304 KRT83P78385 493 aa10.57□□□□□ -0.72
CLIP1-212ENST00000540304 KCNH2Q12809 1159 aa10.57□□□□□ -0.72
CLIP1-212ENST00000540304 UGCGQ16739 394 aa10.57□□□□□ -0.72
CLIP1-212ENST00000540304 GADL1Q6ZQY3 521 aa10.57□□□□□ -0.72
CLIP1-212ENST00000540304 CACNA2D4Q7Z3S7 1137 aa10.57□□□□□ -0.72
CLIP1-212ENST00000540304 PRRT2Q7Z6L0 340 aaPredicted RBP10.57□□□□□ -0.72
CLIP1-212ENST00000540304 RPAINQ86UA6 219 aa10.57□□□□□ -0.72
CLIP1-212ENST00000540304 ERO1BQ86YB8 467 aa10.57□□□□□ -0.72
CLIP1-212ENST00000540304 ANKRD13AQ8IZ07 590 aa10.57□□□□□ -0.72
CLIP1-212ENST00000540304 ZC3H15Q8WU90 426 aaKnown RBP10.57□□□□□ -0.72
CLIP1-212ENST00000540304 CDCA5Q96FF9 252 aa10.57□□□□□ -0.72
CLIP1-212ENST00000540304 ZNF446Q9NWS9 450 aa10.57□□□□□ -0.72
CLIP1-212ENST00000540304 CEP72Q9P209 647 aa10.57□□□□□ -0.72
CLIP1-212ENST00000540304 LARSQ9P2J5 1176 aaKnown RBP10.57□□□□□ -0.72
CLIP1-212ENST00000540304 PCDHA10Q9Y5I2 948 aa10.57□□□□□ -0.72
CLIP1-212ENST00000540304 PFASO15067 1338 aa10.57□□□□□ -0.72
CLIP1-212ENST00000540304 NFASCO94856 1347 aa10.57□□□□□ -0.72
CLIP1-212ENST00000540304 EIF3CLB5ME19 914 aaKnown RBP10.57□□□□□ -0.72
CLIP1-212ENST00000540304 CLIC2O15247 247 aa10.57□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms