RNA–Protein interactions for RNA: ENST00000539244.6

SS18-204, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 977 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-204ENST00000539244 ZMYND12Q9H0C1 365 aa15.42■□□□□ 0.06
SS18-204ENST00000539244 TBC1D22BQ9NU19 505 aa15.42■□□□□ 0.06
SS18-204ENST00000539244 TMEM161AQ9NX61 479 aa15.42■□□□□ 0.06
SS18-204ENST00000539244 LZTS1Q9Y250 596 aa15.42■□□□□ 0.06
SS18-204ENST00000539244 USP15Q9Y4E8 981 aaPredicted RBP15.42■□□□□ 0.06
SS18-204ENST00000539244 WDR81Q562E7 1941 aa15.42■□□□□ 0.06
SS18-204ENST00000539244 KLF18A0A0U1RQI7 1052 aa15.41■□□□□ 0.06
SS18-204ENST00000539244 IRX6P78412 446 aaPredicted RBP15.41■□□□□ 0.06
SS18-204ENST00000539244 KCNC3Q14003 757 aa15.41■□□□□ 0.06
SS18-204ENST00000539244 KIZQ2M2Z5 673 aa15.41■□□□□ 0.06
SS18-204ENST00000539244 ADCK5Q3MIX3 580 aa15.41■□□□□ 0.06
SS18-204ENST00000539244 TRIM67Q6ZTA4 783 aa15.41■□□□□ 0.06
SS18-204ENST00000539244 SMAP1Q8IYB5 467 aaPredicted RBP15.41■□□□□ 0.06
SS18-204ENST00000539244 RASEFQ8IZ41 740 aa15.41■□□□□ 0.06
SS18-204ENST00000539244 COLGALT1Q8NBJ5 622 aa15.41■□□□□ 0.06
SS18-204ENST00000539244 VN1R2Q8NFZ6 395 aa15.41■□□□□ 0.06
SS18-204ENST00000539244 RASGRP4Q8TDF6 673 aa15.41■□□□□ 0.06
SS18-204ENST00000539244 OSMRQ99650 979 aa15.41■□□□□ 0.06
SS18-204ENST00000539244 PHF7Q9BWX1 381 aaPredicted RBP15.41■□□□□ 0.06
SS18-204ENST00000539244 CWH43Q9H720 699 aa15.41■□□□□ 0.06
SS18-204ENST00000539244 TYW1Q9NV66 732 aaKnown RBP15.41■□□□□ 0.06
SS18-204ENST00000539244 PPFIA3O75145 1194 aa15.4■□□□□ 0.06
SS18-204ENST00000539244 HMGB1P09429 215 aaKnown RBP15.4■□□□□ 0.06
SS18-204ENST00000539244 LAG3P18627 525 aa15.4■□□□□ 0.06
SS18-204ENST00000539244 ERVFC1P60507 584 aa15.4■□□□□ 0.06
SS18-204ENST00000539244 ZXDAP98168 799 aa15.4■□□□□ 0.06
SS18-204ENST00000539244 PLCB3Q01970 1234 aa15.4■□□□□ 0.06
SS18-204ENST00000539244 KRT32Q14532 448 aa15.4■□□□□ 0.06
SS18-204ENST00000539244 PKN1Q16512 942 aa15.4■□□□□ 0.06
SS18-204ENST00000539244 SPOUT1Q5T280 376 aaKnown RBP15.4■□□□□ 0.06
SS18-204ENST00000539244 JAKMIP3Q5VZ66 844 aa15.4■□□□□ 0.06
SS18-204ENST00000539244 THNSL1Q8IYQ7 743 aa15.4■□□□□ 0.06
SS18-204ENST00000539244 ZNF710Q8N1W2 664 aa15.4■□□□□ 0.06
SS18-204ENST00000539244 LINC01465Q8N7H1 131 aa15.4■□□□□ 0.06
SS18-204ENST00000539244 MICAL1Q8TDZ2 1067 aa15.4■□□□□ 0.06
SS18-204ENST00000539244 ZNF577Q9BSK1 485 aa15.4■□□□□ 0.06
SS18-204ENST00000539244 ATP6V0A4Q9HBG4 840 aa15.4■□□□□ 0.06
SS18-204ENST00000539244 HCSTQ9UBK5 93 aa15.4■□□□□ 0.06
SS18-204ENST00000539244 CEP131Q9UPN4 1083 aa15.4■□□□□ 0.06
SS18-204ENST00000539244 PCDHA10Q9Y5I2 948 aa15.4■□□□□ 0.06
SS18-204ENST00000539244 NID2Q14112 1375 aa15.39■□□□□ 0.05
SS18-204ENST00000539244 CCDC196A0A1B0GTZ2 297 aa15.39■□□□□ 0.05
SS18-204ENST00000539244 TMEM221A6NGB7 291 aa15.39■□□□□ 0.05
SS18-204ENST00000539244 M0R296 226 aa15.39■□□□□ 0.05
SS18-204ENST00000539244 PER2O15055 1255 aa15.39■□□□□ 0.05
SS18-204ENST00000539244 MAGEB2O15479 319 aa15.39■□□□□ 0.05
SS18-204ENST00000539244 HOXA2O43364 376 aa15.39■□□□□ 0.05
SS18-204ENST00000539244 VTNP04004 478 aa15.39■□□□□ 0.05
SS18-204ENST00000539244 FGFR1P11362 822 aa15.39■□□□□ 0.05
SS18-204ENST00000539244 CIITAP33076 1130 aa15.39■□□□□ 0.05
SS18-204ENST00000539244 CCDC12Q8WUD4 166 aaPredicted RBP15.39■□□□□ 0.05
SS18-204ENST00000539244 MRPS27Q92552 414 aaKnown RBP15.39■□□□□ 0.05
SS18-204ENST00000539244 TMEM117Q9H0C3 514 aa15.39■□□□□ 0.05
SS18-204ENST00000539244 RNF19AQ9NV58 838 aa15.39■□□□□ 0.05
SS18-204ENST00000539244 ADAMTS3O15072 1205 aa15.38■□□□□ 0.05
SS18-204ENST00000539244 PSAPP07602 524 aa15.38■□□□□ 0.05
SS18-204ENST00000539244 IBSPP21815 317 aaPredicted RBP15.38■□□□□ 0.05
SS18-204ENST00000539244 ADD1P35611 737 aaKnown RBP15.38■□□□□ 0.05
SS18-204ENST00000539244 RBM10P98175 930 aaKnown RBP15.38■□□□□ 0.05
SS18-204ENST00000539244 LRRC55Q6ZSA7 311 aa15.38■□□□□ 0.05
SS18-204ENST00000539244 CKAP2LQ8IYA6 745 aa15.38■□□□□ 0.05
SS18-204ENST00000539244 REXO1Q8N1G1 1221 aaKnown RBP15.38■□□□□ 0.05
SS18-204ENST00000539244 METTL13Q8N6R0 699 aa15.38■□□□□ 0.05
SS18-204ENST00000539244 LENG9Q96B70 501 aa15.38■□□□□ 0.05
SS18-204ENST00000539244 FAM167AQ96KS9 214 aa15.38■□□□□ 0.05
SS18-204ENST00000539244 CASD1Q96PB1 797 aa15.38■□□□□ 0.05
SS18-204ENST00000539244 PPP1R16BQ96T49 567 aa15.38■□□□□ 0.05
SS18-204ENST00000539244 PRRX2Q99811 253 aa15.38■□□□□ 0.05
SS18-204ENST00000539244 S1PR5Q9H228 398 aa15.38■□□□□ 0.05
SS18-204ENST00000539244 C6orf50Q9HD87 102 aa15.38■□□□□ 0.05
SS18-204ENST00000539244 ZDBF2Q9HCK1 2354 aa15.38■□□□□ 0.05
SS18-204ENST00000539244 PRPF3O43395 683 aaKnown RBP15.37■□□□□ 0.05
SS18-204ENST00000539244 SRGAP2BP0DMP2 458 aa15.37■□□□□ 0.05
SS18-204ENST00000539244 GNA11P29992 359 aa15.37■□□□□ 0.05
SS18-204ENST00000539244 PPM1AP35813 382 aa15.37■□□□□ 0.05
SS18-204ENST00000539244 METAP2P50579 478 aaKnown RBP eCLIP15.37■□□□□ 0.05
SS18-204ENST00000539244 CLCN3P51790 818 aa15.37■□□□□ 0.05
SS18-204ENST00000539244 NLRP11P59045 1033 aaKnown RBP15.37■□□□□ 0.05
SS18-204ENST00000539244 SIGLEC14Q08ET2 396 aa15.37■□□□□ 0.05
SS18-204ENST00000539244 LRRC43Q8N309 656 aa15.37■□□□□ 0.05
SS18-204ENST00000539244 FBXL16Q8N461 479 aa15.37■□□□□ 0.05
SS18-204ENST00000539244 PBXIP1Q96AQ6 731 aa15.37■□□□□ 0.05
SS18-204ENST00000539244 MAP7D2Q96T17 732 aa15.37■□□□□ 0.05
SS18-204ENST00000539244 ADAMTS10Q9H324 1103 aa15.37■□□□□ 0.05
SS18-204ENST00000539244 NGRNQ9NPE2 291 aaKnown RBP15.37■□□□□ 0.05
SS18-204ENST00000539244 GABBR1Q9UBS5 961 aa15.37■□□□□ 0.05
SS18-204ENST00000539244 TCEAL9Q9UHQ7 104 aa15.37■□□□□ 0.05
SS18-204ENST00000539244 PUF60Q9UHX1 559 aaKnown RBP15.37■□□□□ 0.05
SS18-204ENST00000539244 KMT2EQ8IZD2 1858 aa15.37■□□□□ 0.05
SS18-204ENST00000539244 EIF4BP23588 611 aaKnown RBP15.36■□□□□ 0.05
SS18-204ENST00000539244 TMOD1P28289 359 aa15.36■□□□□ 0.05
SS18-204ENST00000539244 PRR16Q569H4 304 aa15.36■□□□□ 0.05
SS18-204ENST00000539244 EFCAB12Q6NXP0 572 aa15.36■□□□□ 0.05
SS18-204ENST00000539244 ANKRD54Q6NXT1 300 aa15.36■□□□□ 0.05
SS18-204ENST00000539244 SYCE2Q6PIF2 218 aa15.36■□□□□ 0.05
SS18-204ENST00000539244 KCNT2Q6UVM3 1135 aa15.36■□□□□ 0.05
SS18-204ENST00000539244 ECHDC2Q86YB7 292 aa15.36■□□□□ 0.05
SS18-204ENST00000539244 PRSS33Q8NF86 280 aa15.36■□□□□ 0.05
SS18-204ENST00000539244 KCNB2Q92953 911 aa15.36■□□□□ 0.05
SS18-204ENST00000539244 RPGRIP1Q96KN7 1286 aa15.36■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms