RNA–Protein interactions for RNA: ENST00000538136.1

MSH6-209, Transcript of mutS homolog 6, humanhuman

TSL 2 BASIC

Gene MSH6, Length 4,055 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-209ENST00000538136 GALNT17Q6IS24 598 aa7.96□□□□□ -1.13
MSH6-209ENST00000538136 SPATA31D4Q6ZUB0 917 aa7.96□□□□□ -1.13
MSH6-209ENST00000538136 CSGALNACT2Q8N6G5 542 aa7.96□□□□□ -1.13
MSH6-209ENST00000538136 NAT10Q9H0A0 1025 aaKnown RBP7.96□□□□□ -1.13
MSH6-209ENST00000538136 NT5C3AQ9H0P0 336 aa7.96□□□□□ -1.13
MSH6-209ENST00000538136 ATP6V0A4Q9HBG4 840 aa7.96□□□□□ -1.13
MSH6-209ENST00000538136 USP25Q9UHP3 1055 aa7.96□□□□□ -1.13
MSH6-209ENST00000538136 DDX41Q9UJV9 622 aaKnown RBP7.96□□□□□ -1.13
MSH6-209ENST00000538136 MYH2Q9UKX2 1941 aa7.96□□□□□ -1.13
MSH6-209ENST00000538136 PASKQ96RG2 1323 aa7.96□□□□□ -1.14
MSH6-209ENST00000538136 CASTOR2A6NHX0 329 aa7.96□□□□□ -1.14
MSH6-209ENST00000538136 FAM155AB1AL88 458 aaPredicted RBP7.96□□□□□ -1.14
MSH6-209ENST00000538136 PIK3R2O00459 728 aa7.96□□□□□ -1.14
MSH6-209ENST00000538136 CUTAO60888 179 aa7.96□□□□□ -1.14
MSH6-209ENST00000538136 PPFIA4O75335 1185 aa7.96□□□□□ -1.14
MSH6-209ENST00000538136 BCRP11274 1271 aa7.96□□□□□ -1.14
MSH6-209ENST00000538136 KCNA4P22459 653 aa7.96□□□□□ -1.14
MSH6-209ENST00000538136 PPM1FP49593 454 aaPredicted RBP7.96□□□□□ -1.14
MSH6-209ENST00000538136 SETQ01105 290 aaPredicted RBP7.96□□□□□ -1.14
MSH6-209ENST00000538136 BTG3Q14201 252 aaPredicted RBP7.96□□□□□ -1.14
MSH6-209ENST00000538136 FILIP1LQ4L180 1135 aa7.96□□□□□ -1.14
MSH6-209ENST00000538136 IQSEC1Q6DN90 963 aa7.96□□□□□ -1.14
MSH6-209ENST00000538136 TMC7Q7Z402 723 aa7.96□□□□□ -1.14
MSH6-209ENST00000538136 RNPC3Q96LT9 517 aaKnown RBP7.96□□□□□ -1.14
MSH6-209ENST00000538136 SPAG5Q96R06 1193 aa7.96□□□□□ -1.14
MSH6-209ENST00000538136 ADAM2Q99965 735 aa7.96□□□□□ -1.14
MSH6-209ENST00000538136 GCOM2Q9BZD3 368 aaPredicted RBP7.96□□□□□ -1.14
MSH6-209ENST00000538136 MAGED2Q9UNF1 606 aaPredicted RBP7.96□□□□□ -1.14
MSH6-209ENST00000538136 KRT9P35527 623 aa7.96□□□□□ -1.14
MSH6-209ENST00000538136 EMC2Q15006 297 aa7.96□□□□□ -1.14
MSH6-209ENST00000538136 POSTNQ15063 836 aa7.96□□□□□ -1.14
MSH6-209ENST00000538136 XKR3Q5GH77 459 aa7.96□□□□□ -1.14
MSH6-209ENST00000538136 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP7.96□□□□□ -1.14
MSH6-209ENST00000538136 NAP1L4Q99733 375 aaKnown RBP7.96□□□□□ -1.14
MSH6-209ENST00000538136 MSTO1Q9BUK6 570 aa7.96□□□□□ -1.14
MSH6-209ENST00000538136 SRRTQ9BXP5 876 aaKnown RBP7.96□□□□□ -1.14
MSH6-209ENST00000538136 PARVGQ9HBI0 331 aa7.96□□□□□ -1.14
MSH6-209ENST00000538136 AGO4Q9HCK5 861 aaKnown RBP7.96□□□□□ -1.14
MSH6-209ENST00000538136 PGAP2Q9UHJ9 254 aa7.96□□□□□ -1.14
MSH6-209ENST00000538136 FRMD4BQ9Y2L6 1034 aa7.96□□□□□ -1.14
MSH6-209ENST00000538136 TRIM49BA6NDI0 452 aa7.95□□□□□ -1.14
MSH6-209ENST00000538136 TBKBP1A7MCY6 615 aa7.95□□□□□ -1.14
MSH6-209ENST00000538136 CCNE2O96020 404 aa7.95□□□□□ -1.14
MSH6-209ENST00000538136 SMIM10L2AP0DMW4 78 aa7.95□□□□□ -1.14
MSH6-209ENST00000538136 SMIM10L2BP0DMW5 78 aa7.95□□□□□ -1.14
MSH6-209ENST00000538136 TOB1P50616 345 aaPredicted RBP7.95□□□□□ -1.14
MSH6-209ENST00000538136 USP11P51784 963 aa7.95□□□□□ -1.14
MSH6-209ENST00000538136 GUCY2FP51841 1108 aa7.95□□□□□ -1.14
MSH6-209ENST00000538136 JAK3P52333 1124 aa7.95□□□□□ -1.14
MSH6-209ENST00000538136 TERF1P54274 439 aa7.95□□□□□ -1.14
MSH6-209ENST00000538136 RTP1P59025 263 aa7.95□□□□□ -1.14
MSH6-209ENST00000538136 ORC1Q13415 861 aa7.95□□□□□ -1.14
MSH6-209ENST00000538136 PRPF4BQ13523 1007 aaKnown RBP7.95□□□□□ -1.14
MSH6-209ENST00000538136 TTC30AQ86WT1 665 aa7.95□□□□□ -1.14
MSH6-209ENST00000538136 SCN4BQ8IWT1 228 aa7.95□□□□□ -1.14
MSH6-209ENST00000538136 FAM133AQ8N9E0 248 aa7.95□□□□□ -1.14
MSH6-209ENST00000538136 SLC28A3Q9HAS3 691 aa7.95□□□□□ -1.14
MSH6-209ENST00000538136 TAB2Q9NYJ8 693 aa7.95□□□□□ -1.14
MSH6-209ENST00000538136 CACNA1HO95180 2353 aa7.95□□□□□ -1.14
MSH6-209ENST00000538136 DOCK3Q8IZD9 2030 aa7.95□□□□□ -1.14
MSH6-209ENST00000538136 SPTA1P02549 2419 aa7.95□□□□□ -1.14
MSH6-209ENST00000538136 NRDCO43847 1150 aa7.95□□□□□ -1.14
MSH6-209ENST00000538136 OATP04181 439 aa7.95□□□□□ -1.14
MSH6-209ENST00000538136 SREBF1P36956 1147 aa7.95□□□□□ -1.14
MSH6-209ENST00000538136 TFDP1Q14186 410 aa7.95□□□□□ -1.14
MSH6-209ENST00000538136 DUSP28Q4G0W2 176 aa7.95□□□□□ -1.14
MSH6-209ENST00000538136 CELF3Q5SZQ8 465 aaKnown RBP7.95□□□□□ -1.14
MSH6-209ENST00000538136 CCDC150Q8NCX0 1101 aa7.95□□□□□ -1.14
MSH6-209ENST00000538136 REPS2Q8NFH8 660 aa7.95□□□□□ -1.14
MSH6-209ENST00000538136 ZBTB45Q96K62 511 aaPredicted RBP7.95□□□□□ -1.14
MSH6-209ENST00000538136 FAM20AQ96MK3 541 aa7.95□□□□□ -1.14
MSH6-209ENST00000538136 COL4A3BPQ9Y5P4 624 aa7.95□□□□□ -1.14
MSH6-209ENST00000538136 SPEF2Q9C093 1822 aa7.95□□□□□ -1.14
MSH6-209ENST00000538136 ELP1O95163 1332 aa7.95□□□□□ -1.14
MSH6-209ENST00000538136 IGKV6D-41A0A0C4DH26 115 aa7.95□□□□□ -1.14
MSH6-209ENST00000538136 LRRN2O75325 713 aa7.95□□□□□ -1.14
MSH6-209ENST00000538136 B3GAT3O94766 335 aa7.95□□□□□ -1.14
MSH6-209ENST00000538136 IPO7O95373 1038 aaKnown RBP7.95□□□□□ -1.14
MSH6-209ENST00000538136 NPTXRO95502 500 aa7.95□□□□□ -1.14
MSH6-209ENST00000538136 SUPT20HL2P0C7V6 817 aa7.95□□□□□ -1.14
MSH6-209ENST00000538136 PRR29P0C7W0 189 aa7.95□□□□□ -1.14
MSH6-209ENST00000538136 ATXN8OSP0DMR3 200 aa7.95□□□□□ -1.14
MSH6-209ENST00000538136 RABGGTBP53611 331 aa7.95□□□□□ -1.14
MSH6-209ENST00000538136 KCNK18Q7Z418 384 aa7.95□□□□□ -1.14
MSH6-209ENST00000538136 PPM1KQ8N3J5 372 aa7.95□□□□□ -1.14
MSH6-209ENST00000538136 BADQ92934 168 aa7.95□□□□□ -1.14
MSH6-209ENST00000538136 VTA1Q9NP79 307 aa7.95□□□□□ -1.14
MSH6-209ENST00000538136 FAM207AQ9NSI2 230 aaPredicted RBP7.95□□□□□ -1.14
MSH6-209ENST00000538136 POLR3EQ9NVU0 708 aa7.95□□□□□ -1.14
MSH6-209ENST00000538136 UMODL1Q5DID0 1318 aa7.95□□□□□ -1.14
MSH6-209ENST00000538136 SMCHD1A6NHR9 2005 aa7.95□□□□□ -1.14
MSH6-209ENST00000538136 FAM160A1Q05DH4 1040 aa7.94□□□□□ -1.14
MSH6-209ENST00000538136 SH3D19Q5HYK7 790 aa7.94□□□□□ -1.14
MSH6-209ENST00000538136 DSTYKQ6XUX3 929 aa7.94□□□□□ -1.14
MSH6-209ENST00000538136 DNERQ8NFT8 737 aa7.94□□□□□ -1.14
MSH6-209ENST00000538136 RUSC1Q9BVN2 902 aa7.94□□□□□ -1.14
MSH6-209ENST00000538136 KATNAL1Q9BW62 490 aa7.94□□□□□ -1.14
MSH6-209ENST00000538136 TSPY26PQ9H489 355 aa7.94□□□□□ -1.14
MSH6-209ENST00000538136 PIDD1Q9HB75 910 aa7.94□□□□□ -1.14
MSH6-209ENST00000538136 CDY2AQ9Y6F7 541 aa7.94□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 71.3 ms