RNA–Protein interactions for RNA: ENST00000531110.5

CD44-231, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-231ENST00000531110 IL13P35225 146 aa6.73□□□□□ -1.33
CD44-231ENST00000531110 LSSP48449 732 aa6.73□□□□□ -1.33
CD44-231ENST00000531110 PHC1P78364 1004 aa6.73□□□□□ -1.33
CD44-231ENST00000531110 ADCY1Q08828 1119 aa6.73□□□□□ -1.33
CD44-231ENST00000531110 TRDNQ13061 729 aa6.73□□□□□ -1.33
CD44-231ENST00000531110 LRRC32Q14392 662 aa6.73□□□□□ -1.33
CD44-231ENST00000531110 TMEM132BQ14DG7 1078 aa6.73□□□□□ -1.33
CD44-231ENST00000531110 SART3Q15020 963 aaKnown RBP6.73□□□□□ -1.33
CD44-231ENST00000531110 SPTY2D1Q68D10 685 aaPredicted RBP6.73□□□□□ -1.33
CD44-231ENST00000531110 SPOCD1Q6ZMY3 1216 aa6.73□□□□□ -1.33
CD44-231ENST00000531110 RTN4RL1Q86UN2 441 aaPredicted RBP6.73□□□□□ -1.33
CD44-231ENST00000531110 ZNF761Q86XN6 746 aaPredicted RBP6.73□□□□□ -1.33
CD44-231ENST00000531110 PASD1Q8IV76 773 aa6.73□□□□□ -1.33
CD44-231ENST00000531110 LSM14AQ8ND56 463 aaKnown RBP6.73□□□□□ -1.33
CD44-231ENST00000531110 CALML6Q8TD86 181 aa6.73□□□□□ -1.33
CD44-231ENST00000531110 ZCCHC14Q8WYQ9 949 aaKnown RBP6.73□□□□□ -1.33
CD44-231ENST00000531110 C16orf92Q96LL3 132 aa6.73□□□□□ -1.33
CD44-231ENST00000531110 SLC39A2Q9NP94 309 aa6.73□□□□□ -1.33
CD44-231ENST00000531110 KIF16BQ96L93 1317 aa6.73□□□□□ -1.33
CD44-231ENST00000531110 FSD2A1L4K1 749 aa6.72□□□□□ -1.33
CD44-231ENST00000531110 ANP32CO43423 234 aa6.72□□□□□ -1.33
CD44-231ENST00000531110 ZNF500O60304 480 aaPredicted RBP6.72□□□□□ -1.33
CD44-231ENST00000531110 CUTAO60888 179 aa6.72□□□□□ -1.33
CD44-231ENST00000531110 SASH1O94885 1247 aa6.72□□□□□ -1.33
CD44-231ENST00000531110 IL18BPO95998 194 aa6.72□□□□□ -1.33
CD44-231ENST00000531110 BPIP17213 487 aa6.72□□□□□ -1.33
CD44-231ENST00000531110 KCNC1P48547 511 aa6.72□□□□□ -1.33
CD44-231ENST00000531110 MLLT6P55198 1093 aaPredicted RBP6.72□□□□□ -1.33
CD44-231ENST00000531110 CDC37Q16543 378 aaPredicted RBP6.72□□□□□ -1.33
CD44-231ENST00000531110 PRAMEF18Q5VWM3 479 aa6.72□□□□□ -1.33
CD44-231ENST00000531110 DDX46Q7L014 1031 aaKnown RBP6.72□□□□□ -1.33
CD44-231ENST00000531110 STK32CQ86UX6 486 aa6.72□□□□□ -1.33
CD44-231ENST00000531110 REXO1L1PQ8IX06 675 aa6.72□□□□□ -1.33
CD44-231ENST00000531110 FOXRED1Q96CU9 486 aaPredicted RBP6.72□□□□□ -1.33
CD44-231ENST00000531110 ZSWIM3Q96MP5 696 aa6.72□□□□□ -1.33
CD44-231ENST00000531110 L2HGDHQ9H9P8 463 aa6.72□□□□□ -1.33
CD44-231ENST00000531110 MED4Q9NPJ6 270 aa6.72□□□□□ -1.33
CD44-231ENST00000531110 USP36Q9P275 1121 aaKnown RBP6.72□□□□□ -1.33
CD44-231ENST00000531110 FTSJ1Q9UET6 329 aa6.72□□□□□ -1.33
CD44-231ENST00000531110 CROTQ9UKG9 612 aa6.72□□□□□ -1.33
CD44-231ENST00000531110 ZNF891A8MT65 544 aaPredicted RBP6.71□□□□□ -1.34
CD44-231ENST00000531110 KRT37O76014 449 aa6.71□□□□□ -1.34
CD44-231ENST00000531110 KLHL18O94889 574 aa6.71□□□□□ -1.34
CD44-231ENST00000531110 ZRANB2O95218 330 aaKnown RBP eCLIP6.71□□□□□ -1.34
CD44-231ENST00000531110 ECE1P42892 770 aa6.71□□□□□ -1.34
CD44-231ENST00000531110 KPNA1P52294 538 aaPredicted RBP6.71□□□□□ -1.34
CD44-231ENST00000531110 ALDH6A1Q02252 535 aaKnown RBP6.71□□□□□ -1.34
CD44-231ENST00000531110 GABPB1Q06547 395 aaPredicted RBP6.71□□□□□ -1.34
CD44-231ENST00000531110 KIAA2012Q0VF49 1180 aa6.71□□□□□ -1.34
CD44-231ENST00000531110 KLHL36Q8N4N3 616 aa6.71□□□□□ -1.34
CD44-231ENST00000531110 HIPK4Q8NE63 616 aa6.71□□□□□ -1.34
CD44-231ENST00000531110 AMNQ9BXJ7 453 aa6.71□□□□□ -1.34
CD44-231ENST00000531110 OR10A5Q9H207 317 aa6.71□□□□□ -1.34
CD44-231ENST00000531110 SMC4Q9NTJ3 1288 aa6.71□□□□□ -1.34
CD44-231ENST00000531110 ZHX1Q9UKY1 873 aaPredicted RBP6.71□□□□□ -1.34
CD44-231ENST00000531110 SCAPERQ9BY12 1400 aa6.7□□□□□ -1.34
CD44-231ENST00000531110 LOC102724159A0A0B4J2E5 919 aa6.7□□□□□ -1.34
CD44-231ENST00000531110 H0Y858 1186 aa6.7□□□□□ -1.34
CD44-231ENST00000531110 DDX3XO00571 662 aaKnown RBP eCLIP6.7□□□□□ -1.34
CD44-231ENST00000531110 NOBOXO60393 691 aa6.7□□□□□ -1.34
CD44-231ENST00000531110 CPEP16870 476 aa6.7□□□□□ -1.34
CD44-231ENST00000531110 MC4RP32245 332 aa6.7□□□□□ -1.34
CD44-231ENST00000531110 MRE11P49959 708 aa6.7□□□□□ -1.34
CD44-231ENST00000531110 GJA9P57773 515 aa6.7□□□□□ -1.34
CD44-231ENST00000531110 PWP2Q15269 919 aaKnown RBP6.7□□□□□ -1.34
CD44-231ENST00000531110 RNF187Q5TA31 235 aaPredicted RBP6.7□□□□□ -1.34
CD44-231ENST00000531110 KANK2Q63ZY3 851 aa6.7□□□□□ -1.34
CD44-231ENST00000531110 TRMT10BQ6PF06 316 aaKnown RBP6.7□□□□□ -1.34
CD44-231ENST00000531110 FAM124AQ86V42 546 aa6.7□□□□□ -1.34
CD44-231ENST00000531110 C11orf74Q86VG3 221 aa6.7□□□□□ -1.34
CD44-231ENST00000531110 AFAP1L2Q8N4X5 818 aa6.7□□□□□ -1.34
CD44-231ENST00000531110 STPG3Q8N7X2 389 aa6.7□□□□□ -1.34
CD44-231ENST00000531110 TXNDC5Q8NBS9 432 aaKnown RBP6.7□□□□□ -1.34
CD44-231ENST00000531110 CHTF18Q8WVB6 975 aa6.7□□□□□ -1.34
CD44-231ENST00000531110 LEO1Q8WVC0 666 aaPredicted RBP6.7□□□□□ -1.34
CD44-231ENST00000531110 LCORQ96JN0 433 aaPredicted RBP6.7□□□□□ -1.34
CD44-231ENST00000531110 ELF4Q99607 663 aaPredicted RBP6.7□□□□□ -1.34
CD44-231ENST00000531110 KATNBL1Q9H079 304 aa6.7□□□□□ -1.34
CD44-231ENST00000531110 TMEM168Q9H0V1 697 aa6.7□□□□□ -1.34
CD44-231ENST00000531110 SPC25Q9HBM1 224 aa6.7□□□□□ -1.34
CD44-231ENST00000531110 DONSONQ9NYP3 566 aa6.7□□□□□ -1.34
CD44-231ENST00000531110 CALCOCO1Q9P1Z2 691 aa6.7□□□□□ -1.34
CD44-231ENST00000531110 IBTKQ9P2D0 1353 aaPredicted RBP6.69□□□□□ -1.34
CD44-231ENST00000531110 A0A1B0GTL3 188 aa6.69□□□□□ -1.34
CD44-231ENST00000531110 KLHL33A6NCF5 533 aa6.69□□□□□ -1.34
CD44-231ENST00000531110 VGLL3A8MV65 326 aa6.69□□□□□ -1.34
CD44-231ENST00000531110 BRINP1O60477 761 aa6.69□□□□□ -1.34
CD44-231ENST00000531110 PRLP01236 227 aa6.69□□□□□ -1.34
CD44-231ENST00000531110 CD40P25942 277 aa6.69□□□□□ -1.34
CD44-231ENST00000531110 APEX1P27695 318 aaKnown RBP6.69□□□□□ -1.34
CD44-231ENST00000531110 POLD1P28340 1107 aa6.69□□□□□ -1.34
CD44-231ENST00000531110 MCM5P33992 734 aa6.69□□□□□ -1.34
CD44-231ENST00000531110 ADCYAP1R1P41586 468 aa6.69□□□□□ -1.34
CD44-231ENST00000531110 IL13RA1P78552 427 aa6.69□□□□□ -1.34
CD44-231ENST00000531110 SMAD3P84022 425 aaKnown RBP6.69□□□□□ -1.34
CD44-231ENST00000531110 ROM1Q03395 351 aa6.69□□□□□ -1.34
CD44-231ENST00000531110 VMACQ2NL98 169 aa6.69□□□□□ -1.34
CD44-231ENST00000531110 LCE3BQ5TA77 95 aa6.69□□□□□ -1.34
CD44-231ENST00000531110 FRMD5Q7Z6J6 570 aa6.69□□□□□ -1.34
CD44-231ENST00000531110 NXPE1Q8N323 547 aa6.69□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms