RNA–Protein interactions for RNA: ENST00000526054.5

VPS28-204, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 892 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-204ENST00000526054 GRXCR2A6NFK2 248 aa11.41□□□□□ -0.58
VPS28-204ENST00000526054 DDX39AO00148 427 aaKnown RBP11.41□□□□□ -0.58
VPS28-204ENST00000526054 ENPP3O14638 875 aa11.41□□□□□ -0.58
VPS28-204ENST00000526054 EDIL3O43854 480 aa11.41□□□□□ -0.58
VPS28-204ENST00000526054 CSPG5O95196 566 aa11.41□□□□□ -0.58
VPS28-204ENST00000526054 RB1P06400 928 aa11.41□□□□□ -0.58
VPS28-204ENST00000526054 LINC00271P0C7V0 271 aa11.41□□□□□ -0.58
VPS28-204ENST00000526054 BMPR1AP36894 532 aa11.41□□□□□ -0.58
VPS28-204ENST00000526054 STAT5BP51692 787 aa11.41□□□□□ -0.58
VPS28-204ENST00000526054 TMEM62Q0P6H9 643 aa11.41□□□□□ -0.58
VPS28-204ENST00000526054 PAK2Q13177 524 aa11.41□□□□□ -0.58
VPS28-204ENST00000526054 ITGB3BPQ13352 177 aaPredicted RBP11.41□□□□□ -0.58
VPS28-204ENST00000526054 PLCB4Q15147 1175 aa11.41□□□□□ -0.58
VPS28-204ENST00000526054 TRAPPC12Q8WVT3 735 aa11.41□□□□□ -0.58
VPS28-204ENST00000526054 LINC01599Q8WXQ3 324 aa11.41□□□□□ -0.58
VPS28-204ENST00000526054 LENG9Q96B70 501 aa11.41□□□□□ -0.58
VPS28-204ENST00000526054 FTHL17Q9BXU8 183 aa11.41□□□□□ -0.58
VPS28-204ENST00000526054 AGO3Q9H9G7 860 aaKnown RBP11.41□□□□□ -0.58
VPS28-204ENST00000526054 FAM50BQ9Y247 325 aa11.41□□□□□ -0.58
VPS28-204ENST00000526054 IGSF9BQ9UPX0 1349 aa11.4□□□□□ -0.58
VPS28-204ENST00000526054 POTEB3A0JP26 581 aa11.4□□□□□ -0.58
VPS28-204ENST00000526054 VPS37CA5D8V6 355 aaPredicted RBP11.4□□□□□ -0.58
VPS28-204ENST00000526054 PI4K2BG5E9Z4 385 aa11.4□□□□□ -0.58
VPS28-204ENST00000526054 GRM6O15303 877 aa11.4□□□□□ -0.58
VPS28-204ENST00000526054 MSH4O15457 936 aa11.4□□□□□ -0.58
VPS28-204ENST00000526054 SLC37A4O43826 429 aa11.4□□□□□ -0.58
VPS28-204ENST00000526054 MARCH6O60337 910 aa11.4□□□□□ -0.58
VPS28-204ENST00000526054 GAS7O60861 476 aa11.4□□□□□ -0.58
VPS28-204ENST00000526054 GPR37L1O60883 481 aa11.4□□□□□ -0.58
VPS28-204ENST00000526054 DGKIO75912 1065 aa11.4□□□□□ -0.58
VPS28-204ENST00000526054 U2AF2P26368 475 aaKnown RBP eCLIP11.4□□□□□ -0.58
VPS28-204ENST00000526054 ANP32AP39687 249 aaKnown RBP11.4□□□□□ -0.58
VPS28-204ENST00000526054 TRAPPC10P48553 1259 aa11.4□□□□□ -0.58
VPS28-204ENST00000526054 SLC26A2P50443 739 aa11.4□□□□□ -0.58
VPS28-204ENST00000526054 KRT76Q01546 638 aa11.4□□□□□ -0.58
VPS28-204ENST00000526054 ORC2Q13416 577 aaPredicted RBP11.4□□□□□ -0.58
VPS28-204ENST00000526054 COL19A1Q14993 1142 aa11.4□□□□□ -0.58
VPS28-204ENST00000526054 LRCH2Q5VUJ6 765 aa11.4□□□□□ -0.58
VPS28-204ENST00000526054 POTEBQ6S5H4 581 aa11.4□□□□□ -0.58
VPS28-204ENST00000526054 PLPPR4Q7Z2D5 763 aa11.4□□□□□ -0.58
VPS28-204ENST00000526054 NPAS4Q8IUM7 802 aa11.4□□□□□ -0.58
VPS28-204ENST00000526054 CMTR2Q8IYT2 770 aaKnown RBP11.4□□□□□ -0.58
VPS28-204ENST00000526054 SLC5A5Q92911 643 aa11.4□□□□□ -0.58
VPS28-204ENST00000526054 CLP1Q92989 425 aaKnown RBP11.4□□□□□ -0.58
VPS28-204ENST00000526054 ZNF689Q96CS4 500 aaPredicted RBP11.4□□□□□ -0.58
VPS28-204ENST00000526054 RIT2Q99578 217 aa11.4□□□□□ -0.58
VPS28-204ENST00000526054 PLVAPQ9BX97 442 aa11.4□□□□□ -0.58
VPS28-204ENST00000526054 TEKT3Q9BXF9 490 aa11.4□□□□□ -0.58
VPS28-204ENST00000526054 C11orf16Q9NQ32 467 aa11.4□□□□□ -0.58
VPS28-204ENST00000526054 PCDHA2Q9Y5H9 948 aa11.4□□□□□ -0.58
VPS28-204ENST00000526054 SQORQ9Y6N5 450 aa11.4□□□□□ -0.58
VPS28-204ENST00000526054 SMIM35A0A1B0GVV1 85 aa11.39□□□□□ -0.59
VPS28-204ENST00000526054 BACH1O14867 736 aa11.39□□□□□ -0.59
VPS28-204ENST00000526054 TBX3O15119 743 aa11.39□□□□□ -0.59
VPS28-204ENST00000526054 NCK2O43639 380 aa11.39□□□□□ -0.59
VPS28-204ENST00000526054 NEMFO60524 1076 aa11.39□□□□□ -0.59
VPS28-204ENST00000526054 BAG4O95429 457 aaKnown RBP11.39□□□□□ -0.59
VPS28-204ENST00000526054 STAG3L1P0CL83 205 aa11.39□□□□□ -0.59
VPS28-204ENST00000526054 ATP2B1P20020 1258 aa11.39□□□□□ -0.59
VPS28-204ENST00000526054 TTC38Q5R3I4 469 aa11.39□□□□□ -0.59
VPS28-204ENST00000526054 FAM160B1Q5W0V3 765 aa11.39□□□□□ -0.59
VPS28-204ENST00000526054 ZNF746Q6NUN9 644 aaPredicted RBP11.39□□□□□ -0.59
VPS28-204ENST00000526054 SMAP1Q8IYB5 467 aaPredicted RBP11.39□□□□□ -0.59
VPS28-204ENST00000526054 ETNPPLQ8TBG4 499 aa11.39□□□□□ -0.59
VPS28-204ENST00000526054 FAM20AQ96MK3 541 aa11.39□□□□□ -0.59
VPS28-204ENST00000526054 UIMC1Q96RL1 719 aa11.39□□□□□ -0.59
VPS28-204ENST00000526054 CELF4Q9BZC1 486 aaKnown RBP11.39□□□□□ -0.59
VPS28-204ENST00000526054 PLXNA4Q9HCM2 1894 aa11.39□□□□□ -0.59
VPS28-204ENST00000526054 PADI3Q9ULW8 664 aa11.39□□□□□ -0.59
VPS28-204ENST00000526054 MRPL42Q9Y6G3 142 aaKnown RBP11.39□□□□□ -0.59
VPS28-204ENST00000526054 MYH15Q9Y2K3 1946 aa11.39□□□□□ -0.59
VPS28-204ENST00000526054 KDM3AQ9Y4C1 1321 aa11.38□□□□□ -0.59
VPS28-204ENST00000526054 C5orf42Q9H799 3197 aa11.38□□□□□ -0.59
VPS28-204ENST00000526054 WDR64B1ANS9 1081 aa11.38□□□□□ -0.59
VPS28-204ENST00000526054 DHX15O43143 795 aaKnown RBP11.38□□□□□ -0.59
VPS28-204ENST00000526054 CCNE2O96020 404 aa11.38□□□□□ -0.59
VPS28-204ENST00000526054 PDIA4P13667 645 aaKnown RBP11.38□□□□□ -0.59
VPS28-204ENST00000526054 ALADP13716 330 aa11.38□□□□□ -0.59
VPS28-204ENST00000526054 SYT1P21579 422 aa11.38□□□□□ -0.59
VPS28-204ENST00000526054 IBSPP21815 317 aaPredicted RBP11.38□□□□□ -0.59
VPS28-204ENST00000526054 SFNP31947 248 aa11.38□□□□□ -0.59
VPS28-204ENST00000526054 JAK3P52333 1124 aa11.38□□□□□ -0.59
VPS28-204ENST00000526054 ZP2Q05996 745 aa11.38□□□□□ -0.59
VPS28-204ENST00000526054 HYAL1Q12794 435 aa11.38□□□□□ -0.59
VPS28-204ENST00000526054 CALCRLQ16602 461 aa11.38□□□□□ -0.59
VPS28-204ENST00000526054 PAN2Q504Q3 1202 aaKnown RBP11.38□□□□□ -0.59
VPS28-204ENST00000526054 RILPL1Q5EBL4 403 aa11.38□□□□□ -0.59
VPS28-204ENST00000526054 MIS18BP1Q6P0N0 1132 aa11.38□□□□□ -0.59
VPS28-204ENST00000526054 MTHFD1LQ6UB35 978 aa11.38□□□□□ -0.59
VPS28-204ENST00000526054 BRAPQ7Z569 592 aa11.38□□□□□ -0.59
VPS28-204ENST00000526054 POTEDQ86YR6 584 aa11.38□□□□□ -0.59
VPS28-204ENST00000526054 CCDC60Q8IWA6 550 aaPredicted RBP11.38□□□□□ -0.59
VPS28-204ENST00000526054 SLFN12Q8IYM2 578 aa11.38□□□□□ -0.59
VPS28-204ENST00000526054 NME8Q8N427 588 aa11.38□□□□□ -0.59
VPS28-204ENST00000526054 ATP8B4Q8TF62 1192 aa11.38□□□□□ -0.59
VPS28-204ENST00000526054 P2RX5Q93086 422 aa11.38□□□□□ -0.59
VPS28-204ENST00000526054 PPP2R3CQ969Q6 453 aa11.38□□□□□ -0.59
VPS28-204ENST00000526054 ALG13Q9NP73 1137 aaKnown RBP11.38□□□□□ -0.59
VPS28-204ENST00000526054 KCNMB3Q9NPA1 279 aa11.38□□□□□ -0.59
VPS28-204ENST00000526054 PRKAG3Q9UGI9 489 aa11.38□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms