RNA–Protein interactions for RNA: ENST00000503057.5

LIMCH1-205, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,467 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-205ENST00000503057 SYN2Q92777 582 aaPredicted RBP11.62□□□□□ -0.55
LIMCH1-205ENST00000503057 MMS19Q96T76 1030 aa11.62□□□□□ -0.55
LIMCH1-205ENST00000503057 NBPF3Q9H094 633 aa11.62□□□□□ -0.55
LIMCH1-205ENST00000503057 UBE4BO95155 1302 aa11.62□□□□□ -0.55
LIMCH1-205ENST00000503057 LDHAP00338 332 aaKnown RBP11.62□□□□□ -0.55
LIMCH1-205ENST00000503057 SURF1Q15526 300 aa11.62□□□□□ -0.55
LIMCH1-205ENST00000503057 PPP1R21Q6ZMI0 780 aa11.62□□□□□ -0.55
LIMCH1-205ENST00000503057 DCPSQ96C86 337 aaKnown RBP11.62□□□□□ -0.55
LIMCH1-205ENST00000503057 RMDN3Q96TC7 470 aa11.62□□□□□ -0.55
LIMCH1-205ENST00000503057 ATP6V0A4Q9HBG4 840 aa11.62□□□□□ -0.55
LIMCH1-205ENST00000503057 ST7Q9NRC1 585 aa11.62□□□□□ -0.55
LIMCH1-205ENST00000503057 DAPK3O43293 454 aa11.62□□□□□ -0.55
LIMCH1-205ENST00000503057 RPUSD2Q8IZ73 545 aaKnown RBP11.62□□□□□ -0.55
LIMCH1-205ENST00000503057 MORC4Q8TE76 937 aa11.62□□□□□ -0.55
LIMCH1-205ENST00000503057 HAUS1Q96CS2 278 aa11.62□□□□□ -0.55
LIMCH1-205ENST00000503057 I3L4J1 428 aa11.62□□□□□ -0.55
LIMCH1-205ENST00000503057 RNF8O76064 485 aa11.62□□□□□ -0.55
LIMCH1-205ENST00000503057 NDUFB10O96000 172 aa11.62□□□□□ -0.55
LIMCH1-205ENST00000503057 TMOD1P28289 359 aa11.62□□□□□ -0.55
LIMCH1-205ENST00000503057 GYS2P54840 703 aa11.62□□□□□ -0.55
LIMCH1-205ENST00000503057 CEP55Q53EZ4 464 aa11.62□□□□□ -0.55
LIMCH1-205ENST00000503057 DALRD3Q5D0E6 543 aaKnown RBP11.62□□□□□ -0.55
LIMCH1-205ENST00000503057 CFAP157Q5JU67 520 aa11.62□□□□□ -0.55
LIMCH1-205ENST00000503057 KAZNQ674X7 775 aa11.62□□□□□ -0.55
LIMCH1-205ENST00000503057 UHMK1Q8TAS1 419 aaKnown RBP11.62□□□□□ -0.55
LIMCH1-205ENST00000503057 REEP2Q9BRK0 252 aa11.62□□□□□ -0.55
LIMCH1-205ENST00000503057 TIPINQ9BVW5 301 aa11.62□□□□□ -0.55
LIMCH1-205ENST00000503057 ABCC6O95255 1503 aa11.61□□□□□ -0.55
LIMCH1-205ENST00000503057 FDX1P10109 184 aa11.61□□□□□ -0.55
LIMCH1-205ENST00000503057 HNRNPH2P55795 449 aaKnown RBP11.61□□□□□ -0.55
LIMCH1-205ENST00000503057 ARHGAP27Q6ZUM4 889 aa11.61□□□□□ -0.55
LIMCH1-205ENST00000503057 ZNF354CQ86Y25 554 aa11.61□□□□□ -0.55
LIMCH1-205ENST00000503057 GSPT2Q8IYD1 628 aaKnown RBP11.61□□□□□ -0.55
LIMCH1-205ENST00000503057 PRPF38AQ8NAV1 312 aaKnown RBP11.61□□□□□ -0.55
LIMCH1-205ENST00000503057 GINS2Q9Y248 185 aa11.61□□□□□ -0.55
LIMCH1-205ENST00000503057 CLEC10AQ8IUN9 316 aa11.61□□□□□ -0.55
LIMCH1-205ENST00000503057 SULF1Q8IWU6 871 aa11.61□□□□□ -0.55
LIMCH1-205ENST00000503057 SLITRK6Q9H5Y7 841 aa11.61□□□□□ -0.55
LIMCH1-205ENST00000503057 RAVER2Q9HCJ3 691 aaKnown RBP11.61□□□□□ -0.55
LIMCH1-205ENST00000503057 ANAPC5Q9UJX4 755 aa11.61□□□□□ -0.55
LIMCH1-205ENST00000503057 SCINQ9Y6U3 715 aa11.61□□□□□ -0.55
LIMCH1-205ENST00000503057 PFASO15067 1338 aa11.61□□□□□ -0.55
LIMCH1-205ENST00000503057 GRB10Q13322 594 aa11.61□□□□□ -0.55
LIMCH1-205ENST00000503057 KCTD2Q14681 263 aa11.61□□□□□ -0.55
LIMCH1-205ENST00000503057 MED7O43513 233 aa11.61□□□□□ -0.55
LIMCH1-205ENST00000503057 CIB2O75838 187 aa11.61□□□□□ -0.55
LIMCH1-205ENST00000503057 TROVE2P10155 538 aaKnown RBP eCLIP11.61□□□□□ -0.55
LIMCH1-205ENST00000503057 GCLMP48507 274 aa11.61□□□□□ -0.55
LIMCH1-205ENST00000503057 LIG3P49916 1009 aa11.61□□□□□ -0.55
LIMCH1-205ENST00000503057 RASSF2P50749 326 aa11.61□□□□□ -0.55
LIMCH1-205ENST00000503057 YARSP54577 528 aaKnown RBP11.61□□□□□ -0.55
LIMCH1-205ENST00000503057 PSMC5P62195 406 aa11.61□□□□□ -0.55
LIMCH1-205ENST00000503057 ERVK-24P63145 666 aa11.61□□□□□ -0.55
LIMCH1-205ENST00000503057 CCDC197Q8NCU1 140 aa11.61□□□□□ -0.55
LIMCH1-205ENST00000503057 RFFLQ8WZ73 363 aa11.61□□□□□ -0.55
LIMCH1-205ENST00000503057 TRIM10Q9UDY6 481 aa11.61□□□□□ -0.55
LIMCH1-205ENST00000503057 LCMT1Q9UIC8 334 aa11.61□□□□□ -0.55
LIMCH1-205ENST00000503057 RGPD1P0DJD0 1748 aa11.6□□□□□ -0.55
LIMCH1-205ENST00000503057 HIP1RO75146 1068 aa11.6□□□□□ -0.55
LIMCH1-205ENST00000503057 ADCY2Q08462 1091 aa11.6□□□□□ -0.55
LIMCH1-205ENST00000503057 SNX1Q13596 522 aa11.6□□□□□ -0.55
LIMCH1-205ENST00000503057 STMN2Q93045 179 aa11.6□□□□□ -0.55
LIMCH1-205ENST00000503057 TAF1DQ9H5J8 278 aaPredicted RBP11.6□□□□□ -0.55
LIMCH1-205ENST00000503057 EIF3DO15371 548 aaKnown RBP eCLIP11.6□□□□□ -0.55
LIMCH1-205ENST00000503057 BUB1BO60566 1050 aaPredicted RBP11.6□□□□□ -0.55
LIMCH1-205ENST00000503057 IL1R1P14778 569 aa11.6□□□□□ -0.55
LIMCH1-205ENST00000503057 MRPS25P82663 173 aaKnown RBP11.6□□□□□ -0.55
LIMCH1-205ENST00000503057 C6orf118Q5T5N4 469 aa11.6□□□□□ -0.55
LIMCH1-205ENST00000503057 CCDC62Q6P9F0 684 aa11.6□□□□□ -0.55
LIMCH1-205ENST00000503057 LDHDQ86WU2 507 aa11.6□□□□□ -0.55
LIMCH1-205ENST00000503057 HNRNPLLQ8WVV9 542 aaKnown RBP11.6□□□□□ -0.55
LIMCH1-205ENST00000503057 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP11.6□□□□□ -0.553e-6■■■■■ 37.8
LIMCH1-205ENST00000503057 ANKS1AQ92625 1134 aa11.6□□□□□ -0.55
LIMCH1-205ENST00000503057 SERPINA10Q9UK55 444 aa11.6□□□□□ -0.55
LIMCH1-205ENST00000503057 FAM205AQ6ZU69 1335 aa11.6□□□□□ -0.55
LIMCH1-205ENST00000503057 SLC16A4O15374 487 aa11.6□□□□□ -0.55
LIMCH1-205ENST00000503057 SLC37A4O43826 429 aa11.6□□□□□ -0.55
LIMCH1-205ENST00000503057 RPA1P27694 616 aa11.6□□□□□ -0.55
LIMCH1-205ENST00000503057 SARNPP82979 210 aaKnown RBP11.6□□□□□ -0.55
LIMCH1-205ENST00000503057 CDK17Q00537 523 aa11.6□□□□□ -0.55
LIMCH1-205ENST00000503057 MDM2Q00987 491 aaPredicted RBP11.6□□□□□ -0.55
LIMCH1-205ENST00000503057 DNAJC24Q6P3W2 148 aa11.6□□□□□ -0.55
LIMCH1-205ENST00000503057 PNMA8AQ86V59 439 aaPredicted RBP11.6□□□□□ -0.55
LIMCH1-205ENST00000503057 MSTO1Q9BUK6 570 aa11.6□□□□□ -0.55
LIMCH1-205ENST00000503057 NOVA2Q9UNW9 492 aaKnown RBP11.6□□□□□ -0.55
LIMCH1-205ENST00000503057 A0A087WUV0 522 aaPredicted RBP11.6□□□□□ -0.55
LIMCH1-205ENST00000503057 KRT1P04264 644 aa11.6□□□□□ -0.55
LIMCH1-205ENST00000503057 KLK7P49862 253 aa11.6□□□□□ -0.55
LIMCH1-205ENST00000503057 FIGNQ5HY92 759 aa11.6□□□□□ -0.55
LIMCH1-205ENST00000503057 MOXD1Q6UVY6 613 aa11.6□□□□□ -0.55
LIMCH1-205ENST00000503057 C3orf67Q6ZVT6 689 aa11.6□□□□□ -0.55
LIMCH1-205ENST00000503057 SLC5A4Q9NY91 659 aa11.6□□□□□ -0.55
LIMCH1-205ENST00000503057 NOC2LQ9Y3T9 749 aaKnown RBP11.6□□□□□ -0.55
LIMCH1-205ENST00000503057 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP11.59□□□□□ -0.55
LIMCH1-205ENST00000503057 ZNF185O15231 689 aa11.59□□□□□ -0.55
LIMCH1-205ENST00000503057 HDLBPQ00341 1268 aaKnown RBP11.59□□□□□ -0.55
LIMCH1-205ENST00000503057 TBX2Q13207 712 aaPredicted RBP11.59□□□□□ -0.55
LIMCH1-205ENST00000503057 RINT1Q6NUQ1 792 aa11.59□□□□□ -0.55
LIMCH1-205ENST00000503057 TTI2Q6NXR4 508 aa11.59□□□□□ -0.55
LIMCH1-205ENST00000503057 RAB3IPQ96QF0 476 aaPredicted RBP11.59□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms