RNA–Protein interactions for RNA: ENST00000495090.6

SYNE1-230, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 1,907 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-230ENST00000495090 CMPK2Q5EBM0 449 aa10.5□□□□□ -0.73
SYNE1-230ENST00000495090 KIAA1755Q5JYT7 1200 aa10.5□□□□□ -0.73
SYNE1-230ENST00000495090 ZDHHC24Q6UX98 284 aa10.5□□□□□ -0.73
SYNE1-230ENST00000495090 KCNK18Q7Z418 384 aa10.5□□□□□ -0.73
SYNE1-230ENST00000495090 CADPS2Q86UW7 1296 aa10.5□□□□□ -0.73
SYNE1-230ENST00000495090 TEX9Q8N6V9 391 aa10.5□□□□□ -0.73
SYNE1-230ENST00000495090 RFFLQ8WZ73 363 aa10.5□□□□□ -0.73
SYNE1-230ENST00000495090 RNF25Q96BH1 459 aaPredicted RBP10.5□□□□□ -0.73
SYNE1-230ENST00000495090 PRMT1Q99873 361 aaKnown RBP10.5□□□□□ -0.73
SYNE1-230ENST00000495090 TRIM51Q9BSJ1 452 aa10.5□□□□□ -0.73
SYNE1-230ENST00000495090 ROPN1BQ9BZX4 212 aaPredicted RBP10.5□□□□□ -0.73
SYNE1-230ENST00000495090 ECT2Q9H8V3 914 aa10.5□□□□□ -0.73
SYNE1-230ENST00000495090 ROPN1Q9HAT0 212 aaPredicted RBP10.5□□□□□ -0.73
SYNE1-230ENST00000495090 ABCF3Q9NUQ8 709 aa10.5□□□□□ -0.73
SYNE1-230ENST00000495090 HDAC9Q9UKV0 1011 aa10.5□□□□□ -0.73
SYNE1-230ENST00000495090 PITPNM2Q9BZ72 1349 aa10.5□□□□□ -0.73
SYNE1-230ENST00000495090 ABLIM1O14639 778 aa10.49□□□□□ -0.73
SYNE1-230ENST00000495090 KIAA0391O15091 583 aaKnown RBP10.49□□□□□ -0.73
SYNE1-230ENST00000495090 ECM2O94769 699 aaPredicted RBP10.49□□□□□ -0.73
SYNE1-230ENST00000495090 GJB6O95452 261 aa10.49□□□□□ -0.73
SYNE1-230ENST00000495090 VIMP08670 466 aaKnown RBP10.49□□□□□ -0.73
SYNE1-230ENST00000495090 TMEM253P0C7T8 217 aa10.49□□□□□ -0.73
SYNE1-230ENST00000495090 FERP16591 822 aa10.49□□□□□ -0.73
SYNE1-230ENST00000495090 PON1P27169 355 aa10.49□□□□□ -0.73
SYNE1-230ENST00000495090 SARNPP82979 210 aaKnown RBP10.49□□□□□ -0.73
SYNE1-230ENST00000495090 PPATQ06203 517 aa10.49□□□□□ -0.73
SYNE1-230ENST00000495090 EXOC3L4Q17RC7 722 aa10.49□□□□□ -0.73
SYNE1-230ENST00000495090 FAM133BQ5BKY9 247 aaKnown RBP10.49□□□□□ -0.73
SYNE1-230ENST00000495090 ASRGL1Q7L266 308 aa10.49□□□□□ -0.73
SYNE1-230ENST00000495090 JAMLQ86YT9 394 aa10.49□□□□□ -0.73
SYNE1-230ENST00000495090 TBC1D16Q8TBP0 767 aa10.49□□□□□ -0.73
SYNE1-230ENST00000495090 SCFD1Q8WVM8 642 aa10.49□□□□□ -0.73
SYNE1-230ENST00000495090 RUNDC3BQ96NL0 473 aa10.49□□□□□ -0.73
SYNE1-230ENST00000495090 AZI2Q9H6S1 392 aa10.49□□□□□ -0.73
SYNE1-230ENST00000495090 MKNK2Q9HBH9 465 aa10.49□□□□□ -0.73
SYNE1-230ENST00000495090 MTRF1LQ9UGC7 380 aaKnown RBP10.49□□□□□ -0.73
SYNE1-230ENST00000495090 TRAF3IP3Q9Y228 551 aa10.49□□□□□ -0.73
SYNE1-230ENST00000495090 L3MBTL1Q9Y468 752 aa10.49□□□□□ -0.73
SYNE1-230ENST00000495090 RPTORQ8N122 1335 aa10.49□□□□□ -0.73
SYNE1-230ENST00000495090 C10orf71Q711Q0 1435 aa10.49□□□□□ -0.73
SYNE1-230ENST00000495090 COL4A1P02462 1669 aa10.49□□□□□ -0.73
SYNE1-230ENST00000495090 KLHL33A6NCF5 533 aa10.48□□□□□ -0.73
SYNE1-230ENST00000495090 ANKRD33BA6NCL7 494 aa10.48□□□□□ -0.73
SYNE1-230ENST00000495090 A6NHS1 94 aa10.48□□□□□ -0.73
SYNE1-230ENST00000495090 POTEMA6NI47 508 aa10.48□□□□□ -0.73
SYNE1-230ENST00000495090 SPDYE3A6NKU9 549 aa10.48□□□□□ -0.73
SYNE1-230ENST00000495090 E7ENQ6 273 aa10.48□□□□□ -0.73
SYNE1-230ENST00000495090 IGF2BP3O00425 579 aaKnown RBP eCLIP10.48□□□□□ -0.73
SYNE1-230ENST00000495090 DDX3XO00571 662 aaKnown RBP eCLIP10.48□□□□□ -0.73
SYNE1-230ENST00000495090 PODXLO00592 558 aa10.48□□□□□ -0.73
SYNE1-230ENST00000495090 SLC37A4O43826 429 aa10.48□□□□□ -0.73
SYNE1-230ENST00000495090 USP17L8P0C7I0 530 aa10.48□□□□□ -0.73
SYNE1-230ENST00000495090 ATP2A2P16615 1042 aaKnown RBP10.48□□□□□ -0.73
SYNE1-230ENST00000495090 TRHP20396 242 aaPredicted RBP10.48□□□□□ -0.73
SYNE1-230ENST00000495090 KCNJ2P63252 427 aa10.48□□□□□ -0.73
SYNE1-230ENST00000495090 LACTBP83111 547 aaPredicted RBP10.48□□□□□ -0.73
SYNE1-230ENST00000495090 CCDC15Q0P6D6 951 aa10.48□□□□□ -0.73
SYNE1-230ENST00000495090 MKRN3Q13064 507 aaKnown RBP10.48□□□□□ -0.73
SYNE1-230ENST00000495090 PLS1Q14651 629 aa10.48□□□□□ -0.73
SYNE1-230ENST00000495090 ENOX2Q16206 610 aaKnown RBP10.48□□□□□ -0.73
SYNE1-230ENST00000495090 ZNF444Q8N0Y2 327 aaPredicted RBP10.48□□□□□ -0.73
SYNE1-230ENST00000495090 SLC30A5Q8TAD4 765 aa10.48□□□□□ -0.73
SYNE1-230ENST00000495090 RBM46Q8TBY0 533 aaKnown RBP10.48□□□□□ -0.73
SYNE1-230ENST00000495090 KLHL29Q96CT2 875 aa10.48□□□□□ -0.73
SYNE1-230ENST00000495090 NUDT12Q9BQG2 462 aa10.48□□□□□ -0.73
SYNE1-230ENST00000495090 ZNF287Q9HBT7 754 aa10.48□□□□□ -0.73
SYNE1-230ENST00000495090 RXFP1Q9HBX9 757 aa10.48□□□□□ -0.73
SYNE1-230ENST00000495090 METTL14Q9HCE5 456 aaKnown RBP10.48□□□□□ -0.73
SYNE1-230ENST00000495090 EMILIN3Q9NT22 766 aa10.48□□□□□ -0.73
SYNE1-230ENST00000495090 ARMCX3Q9UH62 379 aaPredicted RBP10.48□□□□□ -0.73
SYNE1-230ENST00000495090 PCYOX1Q9UHG3 505 aa10.48□□□□□ -0.73
SYNE1-230ENST00000495090 ARL2BPQ9Y2Y0 163 aa10.48□□□□□ -0.73
SYNE1-230ENST00000495090 USP17L3A6NCW0 530 aa10.48□□□□□ -0.73
SYNE1-230ENST00000495090 USP17L4A6NCW7 530 aa10.48□□□□□ -0.73
SYNE1-230ENST00000495090 SLC16A3O15427 465 aaKnown RBP10.48□□□□□ -0.73
SYNE1-230ENST00000495090 EDIL3O43854 480 aa10.48□□□□□ -0.73
SYNE1-230ENST00000495090 DIAPH2O60879 1101 aa10.48□□□□□ -0.73
SYNE1-230ENST00000495090 PHF2O75151 1096 aa10.48□□□□□ -0.73
SYNE1-230ENST00000495090 CAMTA2O94983 1202 aa10.48□□□□□ -0.73
SYNE1-230ENST00000495090 GGPS1O95749 300 aa10.48□□□□□ -0.73
SYNE1-230ENST00000495090 RARGP13631 454 aa10.48□□□□□ -0.73
SYNE1-230ENST00000495090 CCNB1P14635 433 aa10.48□□□□□ -0.73
SYNE1-230ENST00000495090 LMNB1P20700 586 aa10.48□□□□□ -0.73
SYNE1-230ENST00000495090 ATP5DP30049 168 aa10.48□□□□□ -0.73
SYNE1-230ENST00000495090 CHRNA3P32297 505 aa10.48□□□□□ -0.73
SYNE1-230ENST00000495090 MSH2P43246 934 aa10.48□□□□□ -0.73
SYNE1-230ENST00000495090 HADHBP55084 474 aaKnown RBP10.48□□□□□ -0.73
SYNE1-230ENST00000495090 IFI35P80217 286 aaPredicted RBP10.48□□□□□ -0.73
SYNE1-230ENST00000495090 ATP11AP98196 1134 aa10.48□□□□□ -0.73
SYNE1-230ENST00000495090 SLC29A2Q14542 456 aa10.48□□□□□ -0.73
SYNE1-230ENST00000495090 EPHA7Q15375 998 aa10.48□□□□□ -0.73
SYNE1-230ENST00000495090 SF3B3Q15393 1217 aaKnown RBP10.48□□□□□ -0.73
SYNE1-230ENST00000495090 DCAF12L1Q5VU92 463 aa10.48□□□□□ -0.73
SYNE1-230ENST00000495090 SPTY2D1Q68D10 685 aaPredicted RBP10.48□□□□□ -0.73
SYNE1-230ENST00000495090 PPP1R18Q6NYC8 613 aa10.48□□□□□ -0.73
SYNE1-230ENST00000495090 USP17L1Q7RTZ2 530 aa10.48□□□□□ -0.73
SYNE1-230ENST00000495090 EGFL6Q8IUX8 553 aa10.48□□□□□ -0.73
SYNE1-230ENST00000495090 KIRREL3Q8IZU9 778 aa10.48□□□□□ -0.73
SYNE1-230ENST00000495090 PROCA1Q8NCQ7 364 aaPredicted RBP10.48□□□□□ -0.73
SYNE1-230ENST00000495090 RIOX1Q9H6W3 641 aa10.48□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 60.6 ms