RNA–Protein interactions for RNA: ENST00000495039.1

VPS50-219, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 1,115 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-219ENST00000495039 ASB1Q9Y576 335 aa6.34□□□□□ -1.39
VPS50-219ENST00000495039 CTDP1Q9Y5B0 961 aaPredicted RBP6.34□□□□□ -1.39
VPS50-219ENST00000495039 MAFO75444 373 aaPredicted RBP6.33□□□□□ -1.4
VPS50-219ENST00000495039 C6orf222P0C671 652 aaPredicted RBP6.33□□□□□ -1.4
VPS50-219ENST00000495039 GABREP78334 506 aa6.33□□□□□ -1.4
VPS50-219ENST00000495039 CNGB1Q14028 1251 aaPredicted RBP6.33□□□□□ -1.4
VPS50-219ENST00000495039 MIEF2Q96C03 454 aa6.33□□□□□ -1.4
VPS50-219ENST00000495039 GBP4Q96PP9 640 aa6.33□□□□□ -1.4
VPS50-219ENST00000495039 TRIM55Q9BYV6 548 aa6.33□□□□□ -1.4
VPS50-219ENST00000495039 KCNH7Q9NS40 1196 aa6.33□□□□□ -1.4
VPS50-219ENST00000495039 PRAMEF22A3QJZ6 481 aa6.32□□□□□ -1.4
VPS50-219ENST00000495039 SCDO00767 359 aa6.32□□□□□ -1.4
VPS50-219ENST00000495039 FOXP2O15409 715 aa6.32□□□□□ -1.4
VPS50-219ENST00000495039 ADCY3O60266 1144 aa6.32□□□□□ -1.4
VPS50-219ENST00000495039 TCF3P15923 654 aa6.32□□□□□ -1.4
VPS50-219ENST00000495039 APEX1P27695 318 aaKnown RBP6.32□□□□□ -1.4
VPS50-219ENST00000495039 SESN2P58004 480 aaPredicted RBP6.32□□□□□ -1.4
VPS50-219ENST00000495039 ADAM15Q13444 863 aa6.32□□□□□ -1.4
VPS50-219ENST00000495039 SAFB2Q14151 953 aaKnown RBP eCLIP6.32□□□□□ -1.4
VPS50-219ENST00000495039 NOSTRINQ8IVI9 506 aa6.32□□□□□ -1.4
VPS50-219ENST00000495039 GMLQ99445 158 aa6.32□□□□□ -1.4
VPS50-219ENST00000495039 PCDHA9Q9Y5H5 950 aa6.32□□□□□ -1.4
VPS50-219ENST00000495039 APPP05067 770 aa6.31□□□□□ -1.4
VPS50-219ENST00000495039 PTGS2P35354 604 aa6.31□□□□□ -1.4
VPS50-219ENST00000495039 MAN2A2P49641 1150 aa6.31□□□□□ -1.4
VPS50-219ENST00000495039 SCNN1GP51170 649 aa6.31□□□□□ -1.4
VPS50-219ENST00000495039 SLC25A3Q00325 362 aa6.31□□□□□ -1.4
VPS50-219ENST00000495039 LAIR1Q6GTX8 287 aa6.31□□□□□ -1.4
VPS50-219ENST00000495039 KLHDC10Q6PID8 442 aa6.31□□□□□ -1.4
VPS50-219ENST00000495039 Q6ZRM9 215 aa6.31□□□□□ -1.4
VPS50-219ENST00000495039 SPATC1Q76KD6 591 aa6.31□□□□□ -1.4
VPS50-219ENST00000495039 RPUSD2Q8IZ73 545 aaKnown RBP6.31□□□□□ -1.4
VPS50-219ENST00000495039 CISD2Q8N5K1 135 aaKnown RBP6.31□□□□□ -1.4
VPS50-219ENST00000495039 SLC43A3Q8NBI5 491 aa6.31□□□□□ -1.4
VPS50-219ENST00000495039 GPRC5BQ9NZH0 403 aa6.31□□□□□ -1.4
VPS50-219ENST00000495039 TNFRSF18Q9Y5U5 241 aa6.31□□□□□ -1.4
VPS50-219ENST00000495039 TRAF5O00463 557 aa6.3□□□□□ -1.4
VPS50-219ENST00000495039 H2AFYO75367 372 aaKnown RBP6.3□□□□□ -1.4
VPS50-219ENST00000495039 CRTAMO95727 393 aa6.3□□□□□ -1.4
VPS50-219ENST00000495039 BMP5P22003 454 aa6.3□□□□□ -1.4
VPS50-219ENST00000495039 STAT3P40763 770 aa6.3□□□□□ -1.4
VPS50-219ENST00000495039 ADCY7P51828 1080 aa6.3□□□□□ -1.4
VPS50-219ENST00000495039 ATP2C1P98194 919 aaPredicted RBP6.3□□□□□ -1.4
VPS50-219ENST00000495039 COL10A1Q03692 680 aa6.3□□□□□ -1.4
VPS50-219ENST00000495039 FSTL1Q12841 308 aa6.3□□□□□ -1.4
VPS50-219ENST00000495039 FAM209AQ5JX71 171 aa6.3□□□□□ -1.4
VPS50-219ENST00000495039 ZBTB38Q8NAP3 1195 aaPredicted RBP6.3□□□□□ -1.4
VPS50-219ENST00000495039 VOPP1Q96AW1 172 aa6.3□□□□□ -1.4
VPS50-219ENST00000495039 SLC7A6OSQ96CW6 309 aaPredicted RBP6.3□□□□□ -1.4
VPS50-219ENST00000495039 SLC6A15Q9H2J7 730 aa6.3□□□□□ -1.4
VPS50-219ENST00000495039 NRDE2Q9H7Z3 1164 aa6.3□□□□□ -1.4
VPS50-219ENST00000495039 PDPK1O15530 556 aa6.29□□□□□ -1.4
VPS50-219ENST00000495039 RPS6KA4O75676 772 aa6.29□□□□□ -1.4
VPS50-219ENST00000495039 SDHAP31040 664 aa6.29□□□□□ -1.4
VPS50-219ENST00000495039 TOB2Q14106 344 aaPredicted RBP6.29□□□□□ -1.4
VPS50-219ENST00000495039 MTERF2Q49AM1 385 aa6.29□□□□□ -1.4
VPS50-219ENST00000495039 TM4SF20Q53R12 229 aa6.29□□□□□ -1.4
VPS50-219ENST00000495039 GSPT2Q8IYD1 628 aaKnown RBP6.29□□□□□ -1.4
VPS50-219ENST00000495039 BCL6BQ8N143 479 aaPredicted RBP6.29□□□□□ -1.4
VPS50-219ENST00000495039 GFM2Q969S9 779 aaKnown RBP6.29□□□□□ -1.4
VPS50-219ENST00000495039 MSRB2Q9Y3D2 182 aa6.29□□□□□ -1.4
VPS50-219ENST00000495039 RASSF10A6NK89 507 aa6.28□□□□□ -1.4
VPS50-219ENST00000495039 SSRP1Q08945 709 aaKnown RBP6.28□□□□□ -1.4
VPS50-219ENST00000495039 FOXB2Q5VYV0 432 aa6.28□□□□□ -1.4
VPS50-219ENST00000495039 FSTL4Q6MZW2 842 aa6.28□□□□□ -1.4
VPS50-219ENST00000495039 GCDHQ92947 438 aaPredicted RBP6.28□□□□□ -1.4
VPS50-219ENST00000495039 GPR87Q9BY21 358 aa6.28□□□□□ -1.4
VPS50-219ENST00000495039 PFDN2Q9UHV9 154 aa6.28□□□□□ -1.4
VPS50-219ENST00000495039 B3GALT1Q9Y5Z6 326 aa6.28□□□□□ -1.4
VPS50-219ENST00000495039 GOLGA6L22H0YM25 854 aa6.27□□□□□ -1.41
VPS50-219ENST00000495039 HIP1RO75146 1068 aa6.27□□□□□ -1.41
VPS50-219ENST00000495039 SMAD3P84022 425 aaKnown RBP6.27□□□□□ -1.41
VPS50-219ENST00000495039 ALDH6A1Q02252 535 aaKnown RBP6.27□□□□□ -1.41
VPS50-219ENST00000495039 TMEM132BQ14DG7 1078 aa6.27□□□□□ -1.41
VPS50-219ENST00000495039 ELAVL1Q15717 326 aaKnown RBP6.27□□□□□ -1.41
VPS50-219ENST00000495039 FAM111BQ6SJ93 734 aa6.27□□□□□ -1.41
VPS50-219ENST00000495039 GAREM2Q75VX8 874 aa6.27□□□□□ -1.41
VPS50-219ENST00000495039 SLC25A43Q8WUT9 341 aaPredicted RBP6.27□□□□□ -1.41
VPS50-219ENST00000495039 DLG3Q92796 817 aa6.27□□□□□ -1.41
VPS50-219ENST00000495039 HAS1Q92839 578 aa6.27□□□□□ -1.41
VPS50-219ENST00000495039 CELF4Q9BZC1 486 aaKnown RBP6.27□□□□□ -1.41
VPS50-219ENST00000495039 SAE1Q9UBE0 346 aaPredicted RBP6.27□□□□□ -1.41
VPS50-219ENST00000495039 PCSK5Q92824 1860 aa6.27□□□□□ -1.41
VPS50-219ENST00000495039 RHOBTB3O94955 611 aa6.26□□□□□ -1.41
VPS50-219ENST00000495039 ADRA1BP35368 520 aa6.26□□□□□ -1.41
VPS50-219ENST00000495039 BPIFB4P59827 614 aa6.26□□□□□ -1.41
VPS50-219ENST00000495039 RASGRF1Q13972 1273 aa6.26□□□□□ -1.41
VPS50-219ENST00000495039 MRGPREQ86SM8 312 aa6.26□□□□□ -1.41
VPS50-219ENST00000495039 ANKRD53Q8N9V6 530 aa6.26□□□□□ -1.41
VPS50-219ENST00000495039 EXOC2Q96KP1 924 aa6.26□□□□□ -1.41
VPS50-219ENST00000495039 RPL10LQ96L21 214 aaKnown RBP6.26□□□□□ -1.41
VPS50-219ENST00000495039 GPHA2Q96T91 129 aa6.26□□□□□ -1.41
VPS50-219ENST00000495039 FOXB1Q99853 325 aa6.26□□□□□ -1.41
VPS50-219ENST00000495039 DHRS4Q9BTZ2 278 aa6.26□□□□□ -1.41
VPS50-219ENST00000495039 DENND2AQ9ULE3 1009 aa6.26□□□□□ -1.41
VPS50-219ENST00000495039 RBM8AQ9Y5S9 174 aaKnown RBP6.26□□□□□ -1.41
VPS50-219ENST00000495039 SLC12A8A0AV02 714 aa6.25□□□□□ -1.41
VPS50-219ENST00000495039 GOLGA8BA8MQT2 603 aa6.25□□□□□ -1.41
VPS50-219ENST00000495039 GCP02774 474 aa6.25□□□□□ -1.41
VPS50-219ENST00000495039 FBLP22087 321 aaKnown RBP6.25□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms