RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 CEP55Q53EZ4 464 aa11.66□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 TSC22D3Q99576 134 aa11.66□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 RIOX1Q9H6W3 641 aa11.66□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 SUDS3Q9H7L9 328 aaPredicted RBP11.66□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 LARSQ9P2J5 1176 aaKnown RBP11.66□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 STK17AQ9UEE5 414 aa11.66□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 SUGT1Q9Y2Z0 365 aa11.66□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 GAKO14976 1311 aa11.65□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 MSH4O15457 936 aa11.65□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 HIP1RO75146 1068 aa11.65□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 KRT19P08727 400 aa11.65□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 NR1D1P20393 614 aa11.65□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 RPS6P62753 249 aaKnown RBP11.65□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 TNNC1P63316 161 aa11.65□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 KCNA1Q09470 495 aa11.65□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 CRYMQ14894 314 aa11.65□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 KRT71Q3SY84 523 aa11.65□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 DPY19L2Q6NUT2 758 aa11.65□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 CDR2LQ86X02 465 aaPredicted RBP11.65□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 POMGNT1Q8WZA1 660 aa11.65□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 FAM84AQ96KN4 292 aa11.65□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 TAAR1Q96RJ0 339 aa11.65□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 CCSER1Q9C0I3 900 aa11.65□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 VCXQ9H320 206 aa11.65□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 HERC5Q9UII4 1024 aaKnown RBP11.65□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 USP54Q70EL1 1684 aa11.65□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 EIF3HO15372 352 aaKnown RBP eCLIP11.65□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 NCK2O43639 380 aa11.65□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 SKAP2O75563 359 aaPredicted RBP11.65□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 SMTNP53814 917 aa11.65□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 LRRC23Q53EV4 343 aaPredicted RBP11.65□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 ZNF746Q6NUN9 644 aaPredicted RBP11.65□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 SWSAP1Q6NVH7 229 aa11.65□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 FAM186BQ8IYM0 893 aa11.65□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 DOT1LQ8TEK3 1739 aa11.65□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 CEP104O60308 925 aa11.65□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 LUC7L3O95232 432 aaKnown RBP11.65□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 SRGAP2CP0DJJ0 459 aa11.65□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 GCLMP48507 274 aa11.65□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 EPHB4P54760 987 aa11.65□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 C2orf54Q08AI8 447 aa11.65□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 TSNAXIP1Q2TAA8 658 aa11.65□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 NAALADL2Q58DX5 795 aa11.65□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 GJB7Q6PEY0 223 aa11.65□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 NAP1L4Q99733 375 aaKnown RBP11.65□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 PARVGQ9HBI0 331 aa11.65□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 GCNT4Q9P109 453 aa11.65□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 TRPC6Q9Y210 931 aa11.65□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 ADGRG1Q9Y653 693 aa11.65□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 COL18A1P39060 1754 aa11.64□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 EIF4E1BA6NMX2 242 aaKnown RBP11.64□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 EEF1GP26641 437 aaKnown RBP11.64□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 CAP2P40123 477 aa11.64□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 MAN2A1Q16706 1144 aa11.64□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 VWA3BQ502W6 1294 aa11.64□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 VTI1AQ96AJ9 217 aa11.64□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 LRRC45Q96CN5 670 aa11.64□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 INTS13Q9NVM9 706 aa11.64□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 STRCQ7RTU9 1775 aa11.64□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 LGALS16A8MUM7 142 aa11.64□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 POLGP54098 1239 aaPredicted RBP11.64□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 NR1I3Q14994 352 aa11.64□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 PADI6Q6TGC4 694 aa11.64□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 ZBTB33Q86T24 672 aa11.64□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 TAB3Q8N5C8 712 aaPredicted RBP11.64□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 TTC16Q8NEE8 873 aa11.64□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 NLGN2Q8NFZ4 835 aa11.64□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 ENTPD3O75355 529 aa11.64□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 TNFAIP3P21580 790 aa11.64□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 RANBP1P43487 201 aa11.64□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 POLE2P56282 527 aa11.64□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 SLC7A5Q01650 507 aa11.64□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 KCNH2Q12809 1159 aa11.64□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 RRP1BQ14684 758 aaKnown RBP11.64□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 ZNF394Q53GI3 561 aa11.64□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 MIEF2Q96C03 454 aa11.64□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 ZBTB10Q96DT7 871 aa11.64□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 FAM163AQ96GL9 167 aaPredicted RBP11.64□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 RUSC1Q9BVN2 902 aa11.64□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 USTQ9Y2C2 406 aa11.64□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 MMP14P50281 582 aa11.63□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 MDM2Q00987 491 aaPredicted RBP11.63□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 ECM1Q16610 540 aa11.63□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 PIK3R5Q8WYR1 880 aa11.63□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 TSGA10Q9BZW7 698 aa11.63□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 VIPAS39Q9H9C1 493 aa11.63□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 KIF9Q9HAQ2 790 aa11.63□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 AS3MTQ9HBK9 375 aa11.63□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 GABBR1Q9UBS5 961 aa11.63□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 ATRNO75882 1429 aa11.63□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 A0A1B0GTH6 734 aa11.63□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 EML1O00423 815 aa11.63□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 ABL1P00519 1130 aa11.63□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 GBP1P32455 592 aa11.63□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 CTNNA1P35221 906 aaKnown RBP11.63□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 CASP4P49662 377 aa11.63□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 PSEN1P49768 467 aa11.63□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 USP14P54578 494 aa11.63□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 SEZ6Q53EL9 994 aa11.63□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 TBC1D1Q86TI0 1168 aaPredicted RBP11.63□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 90 ms