RNA–Protein interactions for RNA: ENST00000485550.5

HMGN1-215, Transcript of high mobility group nucleosome binding domain 1, human

TSL 5

Gene HMGN1, Length 745 nt, Biotype processed transcript, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HMGN1-215	ENST00000485550	POF1B	Q8WVV4	589 aa		12.04	□□□□□ -0.48
HMGN1-215	ENST00000485550	P2RX5	Q93086	422 aa		12.04	□□□□□ -0.48
HMGN1-215	ENST00000485550	CCDC136	Q96JN2	1154 aa		12.04	□□□□□ -0.48
HMGN1-215	ENST00000485550	IRF2BPL	Q9H1B7	796 aa		12.04	□□□□□ -0.48
HMGN1-215	ENST00000485550	CDY2A	Q9Y6F7	541 aa		12.04	□□□□□ -0.48
HMGN1-215	ENST00000485550	DMD	P11532	3685 aa		12.04	□□□□□ -0.48
HMGN1-215	ENST00000485550	VPS13A	Q96RL7	3174 aa		12.04	□□□□□ -0.48
HMGN1-215	ENST00000485550	CACNA1B	Q00975	2339 aa		12.03	□□□□□ -0.48
HMGN1-215	ENST00000485550	MBLAC1	A4D2B0	266 aa	Predicted RBP	12.03	□□□□□ -0.48
HMGN1-215	ENST00000485550	RRN3P2	A6NIE6	340 aa		12.03	□□□□□ -0.48
HMGN1-215	ENST00000485550	hCG_1984214	I3L0E3	225 aa		12.03	□□□□□ -0.48
HMGN1-215	ENST00000485550	MEIS1	O00470	390 aa		12.03	□□□□□ -0.48
HMGN1-215	ENST00000485550	PER2	O15055	1255 aa		12.03	□□□□□ -0.48
HMGN1-215	ENST00000485550	DGKI	O75912	1065 aa		12.03	□□□□□ -0.48
HMGN1-215	ENST00000485550	IBSP	P21815	317 aa	Predicted RBP	12.03	□□□□□ -0.48
HMGN1-215	ENST00000485550	CD52	P31358	61 aa		12.03	□□□□□ -0.48
HMGN1-215	ENST00000485550	CLK2	P49760	499 aa	Known RBP	12.03	□□□□□ -0.48
HMGN1-215	ENST00000485550	AP3B2	Q13367	1082 aa		12.03	□□□□□ -0.48
HMGN1-215	ENST00000485550	PDAP1	Q13442	181 aa	Known RBP	12.03	□□□□□ -0.48
HMGN1-215	ENST00000485550	PFKFB3	Q16875	520 aa	Predicted RBP	12.03	□□□□□ -0.48
HMGN1-215	ENST00000485550	FBXO47	Q5MNV8	452 aa		12.03	□□□□□ -0.48
HMGN1-215	ENST00000485550	BLOC1S2	Q6QNY1	142 aa		12.03	□□□□□ -0.48
HMGN1-215	ENST00000485550	TRMT1L	Q7Z2T5	733 aa	Known RBP	12.03	□□□□□ -0.48
HMGN1-215	ENST00000485550	ZBTB33	Q86T24	672 aa		12.03	□□□□□ -0.48
HMGN1-215	ENST00000485550	PLA2G4D	Q86XP0	818 aa		12.03	□□□□□ -0.48
HMGN1-215	ENST00000485550	ZNF713	Q8N859	430 aa	Predicted RBP	12.03	□□□□□ -0.48
HMGN1-215	ENST00000485550	PHKB	Q93100	1093 aa		12.03	□□□□□ -0.48
HMGN1-215	ENST00000485550	AGO3	Q9H9G7	860 aa	Known RBP	12.03	□□□□□ -0.48
HMGN1-215	ENST00000485550	GVINP1	Q7Z2Y8	2422 aa		12.03	□□□□□ -0.48
HMGN1-215	ENST00000485550	NFASC	O94856	1347 aa		12.03	□□□□□ -0.48
HMGN1-215	ENST00000485550	PRR23A	A6NEV1	266 aa		12.02	□□□□□ -0.49
HMGN1-215	ENST00000485550	FAM86B1	E9PN63	330 aa		12.02	□□□□□ -0.49
HMGN1-215	ENST00000485550	BACH1	O14867	736 aa		12.02	□□□□□ -0.49
HMGN1-215	ENST00000485550	CCNE2	O96020	404 aa		12.02	□□□□□ -0.49
HMGN1-215	ENST00000485550	FAM86B2	P0C5J1	330 aa		12.02	□□□□□ -0.49
HMGN1-215	ENST00000485550	SCG2	P13521	617 aa		12.02	□□□□□ -0.49
HMGN1-215	ENST00000485550	HSPA4	P34932	840 aa		12.02	□□□□□ -0.49
HMGN1-215	ENST00000485550	SREBF1	P36956	1147 aa		12.02	□□□□□ -0.49
HMGN1-215	ENST00000485550	CCT2	P78371	535 aa	Known RBP	12.02	□□□□□ -0.49
HMGN1-215	ENST00000485550	MRPS6	P82932	125 aa	Known RBP	12.02	□□□□□ -0.49
HMGN1-215	ENST00000485550	PTPN21	Q16825	1174 aa		12.02	□□□□□ -0.49
HMGN1-215	ENST00000485550	PLPPR4	Q7Z2D5	763 aa		12.02	□□□□□ -0.49
HMGN1-215	ENST00000485550	RASGRP4	Q8TDF6	673 aa		12.02	□□□□□ -0.49
HMGN1-215	ENST00000485550	LINC01599	Q8WXQ3	324 aa		12.02	□□□□□ -0.49
HMGN1-215	ENST00000485550	KCNB2	Q92953	911 aa		12.02	□□□□□ -0.49
HMGN1-215	ENST00000485550	TLE6	Q9H808	572 aa		12.02	□□□□□ -0.49
HMGN1-215	ENST00000485550	CCDC196	A0A1B0GTZ2	297 aa		12.01	□□□□□ -0.49
HMGN1-215	ENST00000485550	PROB1	E7EW31	1015 aa		12.01	□□□□□ -0.49
HMGN1-215	ENST00000485550	ATG7	O95352	703 aa		12.01	□□□□□ -0.49
HMGN1-215	ENST00000485550	RPS6KB1	P23443	525 aa		12.01	□□□□□ -0.49
HMGN1-215	ENST00000485550	GATM	P50440	423 aa		12.01	□□□□□ -0.49
HMGN1-215	ENST00000485550	AKAP17A	Q02040	695 aa	Known RBP	12.01	□□□□□ -0.49
HMGN1-215	ENST00000485550	NAALADL2	Q58DX5	795 aa		12.01	□□□□□ -0.49
HMGN1-215	ENST00000485550	IER5	Q5VY09	327 aa		12.01	□□□□□ -0.49
HMGN1-215	ENST00000485550	SWSAP1	Q6NVH7	229 aa		12.01	□□□□□ -0.49
HMGN1-215	ENST00000485550	MTHFD1L	Q6UB35	978 aa		12.01	□□□□□ -0.49
HMGN1-215	ENST00000485550	ABHD15	Q6UXT9	468 aa		12.01	□□□□□ -0.49
HMGN1-215	ENST00000485550	TSHZ1	Q6ZSZ6	1077 aa		12.01	□□□□□ -0.49
HMGN1-215	ENST00000485550	RTN4RL1	Q86UN2	441 aa	Predicted RBP	12.01	□□□□□ -0.49
HMGN1-215	ENST00000485550	CMTR2	Q8IYT2	770 aa	Known RBP	12.01	□□□□□ -0.49
HMGN1-215	ENST00000485550	VN1R2	Q8NFZ6	395 aa		12.01	□□□□□ -0.49
HMGN1-215	ENST00000485550	MICAL1	Q8TDZ2	1067 aa		12.01	□□□□□ -0.49
HMGN1-215	ENST00000485550	TNPO1	Q92973	898 aa	Known RBP	12.01	□□□□□ -0.49
HMGN1-215	ENST00000485550	RIPOR3	Q96MK2	946 aa		12.01	□□□□□ -0.49
HMGN1-215	ENST00000485550	APOL5	Q9BWW9	433 aa		12.01	□□□□□ -0.49
HMGN1-215	ENST00000485550	GLT8D2	Q9H1C3	349 aa		12.01	□□□□□ -0.49
HMGN1-215	ENST00000485550	C6orf50	Q9HD87	102 aa		12.01	□□□□□ -0.49
HMGN1-215	ENST00000485550	GINS2	Q9Y248	185 aa		12.01	□□□□□ -0.49
HMGN1-215	ENST00000485550	EP300	Q09472	2414 aa	Predicted RBP	12.01	□□□□□ -0.49
HMGN1-215	ENST00000485550	IGLV3-22	A0A075B6J6	115 aa		12	□□□□□ -0.49
HMGN1-215	ENST00000485550		M0QZ92	97 aa		12	□□□□□ -0.49
HMGN1-215	ENST00000485550	IPO5	O00410	1097 aa	Known RBP	12	□□□□□ -0.49
HMGN1-215	ENST00000485550	DHX15	O43143	795 aa	Known RBP	12	□□□□□ -0.49
HMGN1-215	ENST00000485550	PRPF3	O43395	683 aa	Known RBP	12	□□□□□ -0.49
HMGN1-215	ENST00000485550	ATF7	P17544	494 aa	Predicted RBP	12	□□□□□ -0.49
HMGN1-215	ENST00000485550	KLRC1	P26715	233 aa		12	□□□□□ -0.49
HMGN1-215	ENST00000485550	ID4	P47928	161 aa		12	□□□□□ -0.49
HMGN1-215	ENST00000485550	RCAN1	P53805	252 aa		12	□□□□□ -0.49
HMGN1-215	ENST00000485550	TMEM266	Q2M3C6	531 aa		12	□□□□□ -0.49
HMGN1-215	ENST00000485550	PRR16	Q569H4	304 aa		12	□□□□□ -0.49
HMGN1-215	ENST00000485550	FAM160B1	Q5W0V3	765 aa		12	□□□□□ -0.49
HMGN1-215	ENST00000485550	PDXDC2P	Q6P474	469 aa		12	□□□□□ -0.49
HMGN1-215	ENST00000485550	CCDC60	Q8IWA6	550 aa	Predicted RBP	12	□□□□□ -0.49
HMGN1-215	ENST00000485550	SUSD6	Q92537	303 aa		12	□□□□□ -0.49
HMGN1-215	ENST00000485550	PPP1R16B	Q96T49	567 aa		12	□□□□□ -0.49
HMGN1-215	ENST00000485550	LARP6	Q9BRS8	491 aa	Known RBP	12	□□□□□ -0.49
HMGN1-215	ENST00000485550	SLC26A6	Q9BXS9	759 aa		12	□□□□□ -0.49
HMGN1-215	ENST00000485550	CELF4	Q9BZC1	486 aa	Known RBP	12	□□□□□ -0.49
HMGN1-215	ENST00000485550	ZMYND12	Q9H0C1	365 aa		12	□□□□□ -0.49
HMGN1-215	ENST00000485550	NCOA5	Q9HCD5	579 aa	Known RBP	12	□□□□□ -0.49
HMGN1-215	ENST00000485550	ZNF302	Q9NR11	478 aa		12	□□□□□ -0.49
HMGN1-215	ENST00000485550	PADI3	Q9ULW8	664 aa		12	□□□□□ -0.49
HMGN1-215	ENST00000485550	PCDHA2	Q9Y5H9	948 aa		12	□□□□□ -0.49
HMGN1-215	ENST00000485550	TRPV2	Q9Y5S1	764 aa		12	□□□□□ -0.49
HMGN1-215	ENST00000485550	IGKV6D-21	A0A0A0MT36	114 aa		11.99	□□□□□ -0.49
HMGN1-215	ENST00000485550	SMIM35	A0A1B0GVV1	85 aa		11.99	□□□□□ -0.49
HMGN1-215	ENST00000485550	HBP1	O60381	514 aa		11.99	□□□□□ -0.49
HMGN1-215	ENST00000485550	CYP3A4	P08684	503 aa		11.99	□□□□□ -0.49
HMGN1-215	ENST00000485550	ATP4A	P20648	1035 aa		11.99	□□□□□ -0.49
HMGN1-215	ENST00000485550	PSMA5	P28066	241 aa		11.99	□□□□□ -0.49

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