RNA–Protein interactions for RNA: ENST00000475993.1

ABCF1-205, Transcript of ATP binding cassette subfamily F member 1, human

TSL 1 (best)

Gene ABCF1, Length 2,860 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ABCF1-205	ENST00000475993	TBX22	Q9Y458	520 aa		11.43	□□□□□ -0.58
ABCF1-205	ENST00000475993	hCG_2014768	A0A024R1R8	64 aa		11.42	□□□□□ -0.58
ABCF1-205	ENST00000475993	GFPT2	O94808	682 aa		11.42	□□□□□ -0.58
ABCF1-205	ENST00000475993	FAM200B	P0CF97	657 aa		11.42	□□□□□ -0.58
ABCF1-205	ENST00000475993	GNAT2	P19087	354 aa		11.42	□□□□□ -0.58
ABCF1-205	ENST00000475993	PMS2	P54278	862 aa		11.42	□□□□□ -0.58
ABCF1-205	ENST00000475993	DENND2C	Q68D51	928 aa		11.42	□□□□□ -0.58
ABCF1-205	ENST00000475993	OR52E8	Q6IFG1	317 aa		11.42	□□□□□ -0.58
ABCF1-205	ENST00000475993	CATIP	Q7Z7H3	387 aa		11.42	□□□□□ -0.58
ABCF1-205	ENST00000475993	CROCCP2	Q86T23	111 aa		11.42	□□□□□ -0.58
ABCF1-205	ENST00000475993	MAGEB6	Q8N7X4	407 aa		11.42	□□□□□ -0.58
ABCF1-205	ENST00000475993	STK32A	Q8WU08	396 aa		11.42	□□□□□ -0.58
ABCF1-205	ENST00000475993	NLRP3	Q96P20	1036 aa		11.42	□□□□□ -0.58
ABCF1-205	ENST00000475993	TMEM109	Q9BVC6	243 aa		11.42	□□□□□ -0.58
ABCF1-205	ENST00000475993	CYP39A1	Q9NYL5	469 aa		11.42	□□□□□ -0.58
ABCF1-205	ENST00000475993	ADAMTS1	Q9UHI8	967 aa		11.42	□□□□□ -0.58
ABCF1-205	ENST00000475993	FLT1	P17948	1338 aa		11.42	□□□□□ -0.58
ABCF1-205	ENST00000475993	SMAP	O00193	183 aa		11.42	□□□□□ -0.58
ABCF1-205	ENST00000475993	UNC5C	O95185	931 aa		11.42	□□□□□ -0.58
ABCF1-205	ENST00000475993	FGFR1OP	O95684	399 aa	Known RBP	11.42	□□□□□ -0.58
ABCF1-205	ENST00000475993	PLCG1	P19174	1290 aa		11.42	□□□□□ -0.58
ABCF1-205	ENST00000475993	VCAM1	P19320	739 aa		11.42	□□□□□ -0.58
ABCF1-205	ENST00000475993	RAD23B	P54727	409 aa		11.42	□□□□□ -0.58
ABCF1-205	ENST00000475993	CBX3	Q13185	183 aa		11.42	□□□□□ -0.58
ABCF1-205	ENST00000475993	PABPC4	Q13310	644 aa	Known RBP eCLIP	11.42	□□□□□ -0.58	6e-9	■■□□□ 12.5
ABCF1-205	ENST00000475993	PARP6	Q2NL67	630 aa		11.42	□□□□□ -0.58
ABCF1-205	ENST00000475993	LCA5	Q86VQ0	697 aa		11.42	□□□□□ -0.58
ABCF1-205	ENST00000475993	SUPV3L1	Q8IYB8	786 aa	Known RBP eCLIP	11.42	□□□□□ -0.58	5e-6	■■■■■ 55.7
ABCF1-205	ENST00000475993	ENDOV	Q8N8Q3	282 aa	Known RBP	11.42	□□□□□ -0.58
ABCF1-205	ENST00000475993	TTLL11	Q8NHH1	800 aa		11.42	□□□□□ -0.58
ABCF1-205	ENST00000475993	ASAP3	Q8TDY4	903 aa		11.42	□□□□□ -0.58
ABCF1-205	ENST00000475993	KIFAP3	Q92845	792 aa		11.42	□□□□□ -0.58
ABCF1-205	ENST00000475993	KCNN1	Q92952	543 aa		11.42	□□□□□ -0.58
ABCF1-205	ENST00000475993	FAM136A	Q96C01	138 aa		11.42	□□□□□ -0.58
ABCF1-205	ENST00000475993	TRAPPC9	Q96Q05	1148 aa		11.42	□□□□□ -0.58
ABCF1-205	ENST00000475993	TMEM60	Q9H2L4	133 aa		11.42	□□□□□ -0.58
ABCF1-205	ENST00000475993	GOLPH3	Q9H4A6	298 aa		11.42	□□□□□ -0.58
ABCF1-205	ENST00000475993	CNOT7	Q9UIV1	285 aa	Known RBP	11.42	□□□□□ -0.58
ABCF1-205	ENST00000475993	C1orf167	Q5SNV9	1468 aa		11.42	□□□□□ -0.58
ABCF1-205	ENST00000475993	TLDC2	A0PJX2	215 aa		11.42	□□□□□ -0.58
ABCF1-205	ENST00000475993	CSF1R	P07333	972 aa		11.42	□□□□□ -0.58
ABCF1-205	ENST00000475993	SCG2	P13521	617 aa		11.42	□□□□□ -0.58
ABCF1-205	ENST00000475993	PHKA1	P46020	1223 aa		11.42	□□□□□ -0.58
ABCF1-205	ENST00000475993	KLRC3	Q07444	240 aa		11.42	□□□□□ -0.58
ABCF1-205	ENST00000475993	LRRC55	Q6ZSA7	311 aa		11.42	□□□□□ -0.58
ABCF1-205	ENST00000475993	SEPT14	Q6ZU15	432 aa		11.42	□□□□□ -0.58
ABCF1-205	ENST00000475993	VGLL2	Q8N8G2	317 aa		11.42	□□□□□ -0.58
ABCF1-205	ENST00000475993	SPIRE2	Q8WWL2	714 aa		11.42	□□□□□ -0.58
ABCF1-205	ENST00000475993	ESR2	Q92731	530 aa		11.42	□□□□□ -0.58
ABCF1-205	ENST00000475993	FGD4	Q96M96	766 aa		11.42	□□□□□ -0.58
ABCF1-205	ENST00000475993	ZSCAN10	Q96SZ4	725 aa	Predicted RBP	11.42	□□□□□ -0.58
ABCF1-205	ENST00000475993	TRIM51	Q9BSJ1	452 aa		11.42	□□□□□ -0.58
ABCF1-205	ENST00000475993	HNRNPUL1	Q9BUJ2	856 aa	Known RBP eCLIP	11.42	□□□□□ -0.58
ABCF1-205	ENST00000475993	TMEM221	A6NGB7	291 aa		11.41	□□□□□ -0.58
ABCF1-205	ENST00000475993	TCP11X1	B4DZS4	312 aa		11.41	□□□□□ -0.58
ABCF1-205	ENST00000475993	CALM1	P0DP23	149 aa		11.41	□□□□□ -0.58
ABCF1-205	ENST00000475993	CALM2	P0DP24	149 aa		11.41	□□□□□ -0.58
ABCF1-205	ENST00000475993	CALM3	P0DP25	149 aa		11.41	□□□□□ -0.58
ABCF1-205	ENST00000475993	CEBPA	P49715	358 aa	Predicted RBP	11.41	□□□□□ -0.58
ABCF1-205	ENST00000475993	IFIT5	Q13325	482 aa	Known RBP	11.41	□□□□□ -0.58
ABCF1-205	ENST00000475993	CCDC92	Q53HC0	331 aa	Predicted RBP	11.41	□□□□□ -0.58
ABCF1-205	ENST00000475993	C10orf76	Q5T2E6	689 aa		11.41	□□□□□ -0.58
ABCF1-205	ENST00000475993	DUPD1	Q68J44	220 aa		11.41	□□□□□ -0.58
ABCF1-205	ENST00000475993	LCORL	Q8N3X6	602 aa		11.41	□□□□□ -0.58
ABCF1-205	ENST00000475993	SRBD1	Q8N5C6	995 aa	Known RBP	11.41	□□□□□ -0.58
ABCF1-205	ENST00000475993	ANKLE1	Q8NAG6	615 aa		11.41	□□□□□ -0.58
ABCF1-205	ENST00000475993	ZCRB1	Q8TBF4	217 aa	Known RBP	11.41	□□□□□ -0.58
ABCF1-205	ENST00000475993	PIGO	Q8TEQ8	1089 aa		11.41	□□□□□ -0.58
ABCF1-205	ENST00000475993	HPS3	Q969F9	1004 aa		11.41	□□□□□ -0.58
ABCF1-205	ENST00000475993	CCDC85A	Q96PX6	553 aa	Predicted RBP	11.41	□□□□□ -0.58
ABCF1-205	ENST00000475993	AIPL1	Q9NZN9	384 aa		11.41	□□□□□ -0.58
ABCF1-205	ENST00000475993	TUBGCP4	Q9UGJ1	667 aa		11.41	□□□□□ -0.58
ABCF1-205	ENST00000475993	DOCK2	Q92608	1830 aa		11.41	□□□□□ -0.58
ABCF1-205	ENST00000475993	FAM205A	Q6ZU69	1335 aa		11.41	□□□□□ -0.58
ABCF1-205	ENST00000475993	UQCRFS1P1	P0C7P4	283 aa		11.41	□□□□□ -0.58
ABCF1-205	ENST00000475993	ALOX15	P16050	662 aa	Predicted RBP	11.41	□□□□□ -0.58
ABCF1-205	ENST00000475993	RFC5	P40937	340 aa		11.41	□□□□□ -0.58
ABCF1-205	ENST00000475993	ADCY1	Q08828	1119 aa		11.41	□□□□□ -0.58
ABCF1-205	ENST00000475993	SLC29A2	Q14542	456 aa		11.41	□□□□□ -0.58
ABCF1-205	ENST00000475993	IFIT1B	Q5T764	474 aa	Known RBP	11.41	□□□□□ -0.58
ABCF1-205	ENST00000475993	BTNL9	Q6UXG8	535 aa		11.41	□□□□□ -0.58
ABCF1-205	ENST00000475993	SLFN11	Q7Z7L1	901 aa		11.41	□□□□□ -0.58
ABCF1-205	ENST00000475993	RMDN2	Q96LZ7	410 aa		11.41	□□□□□ -0.58
ABCF1-205	ENST00000475993	TRAIP	Q9BWF2	469 aa		11.41	□□□□□ -0.58
ABCF1-205	ENST00000475993	PLA2G12B	Q9BX93	195 aa		11.41	□□□□□ -0.58
ABCF1-205	ENST00000475993	STMN4	Q9H169	189 aa	Predicted RBP	11.41	□□□□□ -0.58
ABCF1-205	ENST00000475993	VCX	Q9H320	206 aa		11.41	□□□□□ -0.58
ABCF1-205	ENST00000475993	ZBTB3	Q9H5J0	574 aa		11.41	□□□□□ -0.58
ABCF1-205	ENST00000475993	ETNK1	Q9HBU6	452 aa		11.41	□□□□□ -0.58
ABCF1-205	ENST00000475993	DLGAP2	Q9P1A6	1054 aa		11.41	□□□□□ -0.58
ABCF1-205	ENST00000475993	TTC7A	Q9ULT0	858 aa	Predicted RBP	11.41	□□□□□ -0.58
ABCF1-205	ENST00000475993	STXBP5L	Q9Y2K9	1186 aa		11.41	□□□□□ -0.58
ABCF1-205	ENST00000475993	PPAN-P2RY11	A0A0B4J1V8	794 aa	Predicted RBP	11.4	□□□□□ -0.58
ABCF1-205	ENST00000475993	VEGFA	P15692	232 aa	Predicted RBP	11.4	□□□□□ -0.58
ABCF1-205	ENST00000475993	GM2A	P17900	193 aa		11.4	□□□□□ -0.58
ABCF1-205	ENST00000475993	POLR2F	P61218	127 aa	Known RBP	11.4	□□□□□ -0.58
ABCF1-205	ENST00000475993	LRRC63	Q05C16	580 aa		11.4	□□□□□ -0.58
ABCF1-205	ENST00000475993	KLHL30	Q0D2K2	578 aa		11.4	□□□□□ -0.58
ABCF1-205	ENST00000475993	PFKFB3	Q16875	520 aa	Predicted RBP	11.4	□□□□□ -0.58
ABCF1-205	ENST00000475993	FOXB2	Q5VYV0	432 aa		11.4	□□□□□ -0.58

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