RNA–Protein interactions for RNA: ENST00000469054.1

VPS13D-204, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-204ENST00000469054 ZRSR1Q15695 479 aaKnown RBP13.33□□□□□ -0.28
VPS13D-204ENST00000469054 SPECC1Q5M775 1068 aa13.33□□□□□ -0.28
VPS13D-204ENST00000469054 IER5Q5VY09 327 aa13.33□□□□□ -0.28
VPS13D-204ENST00000469054 CABP7Q86V35 215 aa13.33□□□□□ -0.28
VPS13D-204ENST00000469054 RPUSD2Q8IZ73 545 aaKnown RBP13.33□□□□□ -0.28
VPS13D-204ENST00000469054 LRRC71Q8N4P6 559 aa13.33□□□□□ -0.28
VPS13D-204ENST00000469054 KCTD17Q8N5Z5 321 aa13.33□□□□□ -0.28
VPS13D-204ENST00000469054 KCNG4Q8TDN1 519 aa13.33□□□□□ -0.28
VPS13D-204ENST00000469054 SLC7A3Q8WY07 619 aa13.33□□□□□ -0.28
VPS13D-204ENST00000469054 CCDC43Q96MW1 224 aaKnown RBP13.33□□□□□ -0.28
VPS13D-204ENST00000469054 PNMA5Q96PV4 448 aa13.33□□□□□ -0.28
VPS13D-204ENST00000469054 MAP7D2Q96T17 732 aa13.33□□□□□ -0.28
VPS13D-204ENST00000469054 CCSER1Q9C0I3 900 aa13.33□□□□□ -0.28
VPS13D-204ENST00000469054 NT5C3AQ9H0P0 336 aa13.33□□□□□ -0.28
VPS13D-204ENST00000469054 DDX19AQ9NUU7 478 aaKnown RBP13.33□□□□□ -0.28
VPS13D-204ENST00000469054 DBR1Q9UK59 544 aaKnown RBP13.33□□□□□ -0.28
VPS13D-204ENST00000469054 RCOR1Q9UKL0 485 aa13.33□□□□□ -0.28
VPS13D-204ENST00000469054 DNM3Q9UQ16 869 aa13.33□□□□□ -0.28
VPS13D-204ENST00000469054 KDM3AQ9Y4C1 1321 aa13.33□□□□□ -0.28
VPS13D-204ENST00000469054 M0QZ92 97 aa13.32□□□□□ -0.28
VPS13D-204ENST00000469054 DGAT1O75907 488 aa13.32□□□□□ -0.28
VPS13D-204ENST00000469054 CHRNA1P02708 482 aa13.32□□□□□ -0.28
VPS13D-204ENST00000469054 BMP8BP34820 402 aa13.32□□□□□ -0.28
VPS13D-204ENST00000469054 DNM2P50570 870 aa13.32□□□□□ -0.28
VPS13D-204ENST00000469054 POLGP54098 1239 aaPredicted RBP13.32□□□□□ -0.28
VPS13D-204ENST00000469054 MRPS6P82932 125 aaKnown RBP13.32□□□□□ -0.28
VPS13D-204ENST00000469054 MGAT3Q09327 533 aa13.32□□□□□ -0.28
VPS13D-204ENST00000469054 TMEM62Q0P6H9 643 aa13.32□□□□□ -0.28
VPS13D-204ENST00000469054 GRB10Q13322 594 aa13.32□□□□□ -0.28
VPS13D-204ENST00000469054 MBTPS1Q14703 1052 aa13.32□□□□□ -0.28
VPS13D-204ENST00000469054 CALML4Q96GE6 196 aa13.32□□□□□ -0.28
VPS13D-204ENST00000469054 EPSTI1Q96J88 318 aa13.32□□□□□ -0.28
VPS13D-204ENST00000469054 CDK5RAP3Q96JB5 506 aa13.32□□□□□ -0.28
VPS13D-204ENST00000469054 CHAMP1Q96JM3 812 aa13.32□□□□□ -0.28
VPS13D-204ENST00000469054 UBE2OQ9C0C9 1292 aaKnown RBP13.32□□□□□ -0.28
VPS13D-204ENST00000469054 IL23AQ9NPF7 189 aa13.32□□□□□ -0.28
VPS13D-204ENST00000469054 AKT3Q9Y243 479 aa13.32□□□□□ -0.28
VPS13D-204ENST00000469054 CDY2AQ9Y6F7 541 aa13.32□□□□□ -0.28
VPS13D-204ENST00000469054 PDE4DIPQ5VU43 2346 aa13.31□□□□□ -0.28
VPS13D-204ENST00000469054 DNAH12Q6ZR08 3092 aa13.31□□□□□ -0.28
VPS13D-204ENST00000469054 ARHGEF35A5YM69 484 aa13.31□□□□□ -0.28
VPS13D-204ENST00000469054 E9PMD0 336 aa13.31□□□□□ -0.28
VPS13D-204ENST00000469054 GAS2O43903 313 aaKnown RBP13.31□□□□□ -0.28
VPS13D-204ENST00000469054 NBNO60934 754 aa13.31□□□□□ -0.28
VPS13D-204ENST00000469054 EYA4O95677 639 aa13.31□□□□□ -0.28
VPS13D-204ENST00000469054 VTNP04004 478 aa13.31□□□□□ -0.28
VPS13D-204ENST00000469054 PFKMP08237 780 aa13.31□□□□□ -0.28
VPS13D-204ENST00000469054 ACRP10323 421 aa13.31□□□□□ -0.28
VPS13D-204ENST00000469054 NCLP19338 710 aaKnown RBP13.31□□□□□ -0.28
VPS13D-204ENST00000469054 EPHB4P54760 987 aa13.31□□□□□ -0.28
VPS13D-204ENST00000469054 DRP2Q13474 957 aa13.31□□□□□ -0.28
VPS13D-204ENST00000469054 EMC2Q15006 297 aa13.31□□□□□ -0.28
VPS13D-204ENST00000469054 KARSQ15046 597 aaKnown RBP13.31□□□□□ -0.28
VPS13D-204ENST00000469054 TMEM119Q4V9L6 283 aa13.31□□□□□ -0.28
VPS13D-204ENST00000469054 CHRDL2Q6WN34 429 aa13.31□□□□□ -0.28
VPS13D-204ENST00000469054 USP49Q70CQ1 688 aa13.31□□□□□ -0.28
VPS13D-204ENST00000469054 C16orf59Q7L2K0 433 aa13.31□□□□□ -0.28
VPS13D-204ENST00000469054 DEFB128Q7Z7B8 93 aa13.31□□□□□ -0.28
VPS13D-204ENST00000469054 ZNF710Q8N1W2 664 aa13.31□□□□□ -0.28
VPS13D-204ENST00000469054 SYMPKQ92797 1274 aaKnown RBP13.31□□□□□ -0.28
VPS13D-204ENST00000469054 VWCEQ96DN2 955 aa13.31□□□□□ -0.28
VPS13D-204ENST00000469054 PLIN2Q99541 437 aa13.31□□□□□ -0.28
VPS13D-204ENST00000469054 MTRQ99707 1265 aa13.31□□□□□ -0.28
VPS13D-204ENST00000469054 CELF4Q9BZC1 486 aaKnown RBP13.31□□□□□ -0.28
VPS13D-204ENST00000469054 BHMT2Q9H2M3 363 aa13.31□□□□□ -0.28
VPS13D-204ENST00000469054 ATP6V0A4Q9HBG4 840 aa13.31□□□□□ -0.28
VPS13D-204ENST00000469054 XPNPEP1Q9NQW7 623 aa13.31□□□□□ -0.28
VPS13D-204ENST00000469054 SUCLA2Q9P2R7 463 aaPredicted RBP13.31□□□□□ -0.28
VPS13D-204ENST00000469054 TRPV2Q9Y5S1 764 aa13.31□□□□□ -0.28
VPS13D-204ENST00000469054 CUTAO60888 179 aa13.3□□□□□ -0.28
VPS13D-204ENST00000469054 GPR32O75388 356 aa13.3□□□□□ -0.28
VPS13D-204ENST00000469054 CXCL10P02778 98 aa13.3□□□□□ -0.28
VPS13D-204ENST00000469054 TXLNAP40222 546 aa13.3□□□□□ -0.28
VPS13D-204ENST00000469054 ME1P48163 572 aa13.3□□□□□ -0.28
VPS13D-204ENST00000469054 NLRP11P59045 1033 aaKnown RBP13.3□□□□□ -0.28
VPS13D-204ENST00000469054 CDC42EP1Q00587 391 aa13.3□□□□□ -0.28
VPS13D-204ENST00000469054 AXDND1Q5T1B0 1012 aaPredicted RBP13.3□□□□□ -0.28
VPS13D-204ENST00000469054 PADI6Q6TGC4 694 aa13.3□□□□□ -0.28
VPS13D-204ENST00000469054 KCNK18Q7Z418 384 aa13.3□□□□□ -0.28
VPS13D-204ENST00000469054 RASSF8Q8NHQ8 419 aa13.3□□□□□ -0.28
VPS13D-204ENST00000469054 LEO1Q8WVC0 666 aaPredicted RBP13.3□□□□□ -0.28
VPS13D-204ENST00000469054 TCP11Q8WWU5 503 aa13.3□□□□□ -0.28
VPS13D-204ENST00000469054 TMEM143Q96AN5 459 aa13.3□□□□□ -0.28
VPS13D-204ENST00000469054 IPO9Q96P70 1041 aaKnown RBP13.3□□□□□ -0.28
VPS13D-204ENST00000469054 OSBPL7Q9BZF2 842 aa13.3□□□□□ -0.28
VPS13D-204ENST00000469054 SCAND2PQ9GZW5 306 aaPredicted RBP13.3□□□□□ -0.28
VPS13D-204ENST00000469054 PRO3102Q9H379 93 aa13.3□□□□□ -0.28
VPS13D-204ENST00000469054 BMP2KQ9NSY1 1161 aaPredicted RBP13.3□□□□□ -0.28
VPS13D-204ENST00000469054 CHMP5Q9NZZ3 219 aa13.3□□□□□ -0.28
VPS13D-204ENST00000469054 CCDC39Q9UFE4 941 aa13.3□□□□□ -0.28
VPS13D-204ENST00000469054 PCDHA7Q9UN72 937 aa13.3□□□□□ -0.28
VPS13D-204ENST00000469054 GINS2Q9Y248 185 aa13.3□□□□□ -0.28
VPS13D-204ENST00000469054 SQORQ9Y6N5 450 aa13.3□□□□□ -0.28
VPS13D-204ENST00000469054 USO1O60763 962 aaKnown RBP13.29□□□□□ -0.28
VPS13D-204ENST00000469054 FGBP02675 491 aa13.29□□□□□ -0.28
VPS13D-204ENST00000469054 CYP11B2P19099 503 aa13.29□□□□□ -0.28
VPS13D-204ENST00000469054 CRYBB1P53674 252 aaPredicted RBP13.29□□□□□ -0.28
VPS13D-204ENST00000469054 KIZQ2M2Z5 673 aa13.29□□□□□ -0.28
VPS13D-204ENST00000469054 FBXO47Q5MNV8 452 aa13.29□□□□□ -0.28
VPS13D-204ENST00000469054 TMEM240Q5SV17 173 aa13.29□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms