RNA–Protein interactions for RNA: ENST00000466192.5

COL9A3-205, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 2,194 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-205ENST00000466192 CDHR1Q96JP9 859 aa20.07■□□□□ 0.8
COL9A3-205ENST00000466192 R3HDMLQ9H3Y0 253 aa20.07■□□□□ 0.8
COL9A3-205ENST00000466192 ARMCX3Q9UH62 379 aaPredicted RBP20.07■□□□□ 0.8
COL9A3-205ENST00000466192 NFASCO94856 1347 aa20.06■□□□□ 0.8
COL9A3-205ENST00000466192 ZC3H4Q9UPT8 1303 aaKnown RBP20.06■□□□□ 0.8
COL9A3-205ENST00000466192 RPL13P26373 211 aaKnown RBP20.06■□□□□ 0.8
COL9A3-205ENST00000466192 NPEPPSP55786 919 aa20.06■□□□□ 0.8
COL9A3-205ENST00000466192 ERCC6LQ2NKX8 1250 aa20.06■□□□□ 0.8
COL9A3-205ENST00000466192 ARID3AQ99856 593 aa20.06■□□□□ 0.8
COL9A3-205ENST00000466192 CARD6Q9BX69 1037 aa20.06■□□□□ 0.8
COL9A3-205ENST00000466192 JPH1Q9HDC5 661 aaPredicted RBP20.06■□□□□ 0.8
COL9A3-205ENST00000466192 SP2Q02086 613 aa20.05■□□□□ 0.8
COL9A3-205ENST00000466192 KCNH2Q12809 1159 aa20.05■□□□□ 0.8
COL9A3-205ENST00000466192 STXBP2Q15833 593 aa20.05■□□□□ 0.8
COL9A3-205ENST00000466192 XKR9Q5GH70 373 aa20.05■□□□□ 0.8
COL9A3-205ENST00000466192 STXBP4Q6ZWJ1 553 aa20.05■□□□□ 0.8
COL9A3-205ENST00000466192 ANO5Q75V66 913 aa20.05■□□□□ 0.8
COL9A3-205ENST00000466192 ARMC9Q7Z3E5 817 aa20.05■□□□□ 0.8
COL9A3-205ENST00000466192 MNS1Q8NEH6 495 aa20.05■□□□□ 0.8
COL9A3-205ENST00000466192 CCDC43Q96MW1 224 aaKnown RBP20.05■□□□□ 0.8
COL9A3-205ENST00000466192 ANKEF1Q9NU02 776 aa20.05■□□□□ 0.8
COL9A3-205ENST00000466192 GABBR1Q9UBS5 961 aa20.05■□□□□ 0.8
COL9A3-205ENST00000466192 TFR2Q9UP52 801 aa20.05■□□□□ 0.8
COL9A3-205ENST00000466192 PLAGL2Q9UPG8 496 aa20.05■□□□□ 0.8
COL9A3-205ENST00000466192 PCDHB13Q9Y5F0 798 aa20.05■□□□□ 0.8
COL9A3-205ENST00000466192 MRFAP1Q9Y605 127 aa20.05■□□□□ 0.8
COL9A3-205ENST00000466192 ZNFX1Q9P2E3 1918 aaKnown RBP20.05■□□□□ 0.8
COL9A3-205ENST00000466192 ZNF862O60290 1169 aa20.05■□□□□ 0.8
COL9A3-205ENST00000466192 SORBS3O60504 671 aa20.05■□□□□ 0.8
COL9A3-205ENST00000466192 CYLC1P35663 651 aaPredicted RBP20.05■□□□□ 0.8
COL9A3-205ENST00000466192 ALDH5A1P51649 535 aaPredicted RBP20.05■□□□□ 0.8
COL9A3-205ENST00000466192 SP4Q02446 784 aa20.05■□□□□ 0.8
COL9A3-205ENST00000466192 NEK11Q8NG66 645 aa20.05■□□□□ 0.8
COL9A3-205ENST00000466192 LARSQ9P2J5 1176 aaKnown RBP20.05■□□□□ 0.8
COL9A3-205ENST00000466192 SLC9A2Q9UBY0 812 aa20.05■□□□□ 0.8
COL9A3-205ENST00000466192 TRIM10Q9UDY6 481 aa20.05■□□□□ 0.8
COL9A3-205ENST00000466192 LRRC37A2A6NM11 1700 aa20.05■□□□□ 0.8
COL9A3-205ENST00000466192 IQCA1LA6NCM1 817 aa20.04■□□□□ 0.8
COL9A3-205ENST00000466192 SLC16A3O15427 465 aaKnown RBP20.04■□□□□ 0.8
COL9A3-205ENST00000466192 EIF3JO75822 258 aaKnown RBP20.04■□□□□ 0.8
COL9A3-205ENST00000466192 HNRNPH3P31942 346 aaKnown RBP20.04■□□□□ 0.8
COL9A3-205ENST00000466192 NFIL3Q16649 462 aa20.04■□□□□ 0.8
COL9A3-205ENST00000466192 RRAGAQ7L523 313 aa20.04■□□□□ 0.8
COL9A3-205ENST00000466192 GPIHBP1Q8IV16 184 aa20.04■□□□□ 0.8
COL9A3-205ENST00000466192 SLC35F6Q8N357 371 aa20.04■□□□□ 0.8
COL9A3-205ENST00000466192 BAP1Q92560 729 aa20.04■□□□□ 0.8
COL9A3-205ENST00000466192 CRACR2AQ9BSW2 395 aa20.04■□□□□ 0.8
COL9A3-205ENST00000466192 TXNRD2Q9NNW7 524 aa20.04■□□□□ 0.8
COL9A3-205ENST00000466192 GUCA1BQ9UMX6 200 aa20.04■□□□□ 0.8
COL9A3-205ENST00000466192 SOWAHBA6NEL2 793 aa20.04■□□□□ 0.8
COL9A3-205ENST00000466192 K7ENM7 598 aa20.04■□□□□ 0.8
COL9A3-205ENST00000466192 NOL4O94818 638 aa20.04■□□□□ 0.8
COL9A3-205ENST00000466192 STBD1O95210 358 aa20.04■□□□□ 0.8
COL9A3-205ENST00000466192 PLEKP08567 350 aaPredicted RBP20.04■□□□□ 0.8
COL9A3-205ENST00000466192 GJA5P36382 358 aa20.04■□□□□ 0.8
COL9A3-205ENST00000466192 ACTR2P61160 394 aa20.04■□□□□ 0.8
COL9A3-205ENST00000466192 LDLRAD1Q5T700 205 aa20.04■□□□□ 0.8
COL9A3-205ENST00000466192 CCDC170Q8IYT3 715 aa20.04■□□□□ 0.8
COL9A3-205ENST00000466192 GPRC5CQ9NQ84 441 aa20.04■□□□□ 0.8
COL9A3-205ENST00000466192 LRRC53A6NM62 1247 aa20.03■□□□□ 0.8
COL9A3-205ENST00000466192 POTEJP0CG39 1038 aa20.03■□□□□ 0.8
COL9A3-205ENST00000466192 EPB41P11171 864 aaKnown RBP20.03■□□□□ 0.8
COL9A3-205ENST00000466192 PLS3P13797 630 aa20.03■□□□□ 0.8
COL9A3-205ENST00000466192 ICAM3P32942 547 aa20.03■□□□□ 0.8
COL9A3-205ENST00000466192 KRT83P78385 493 aa20.03■□□□□ 0.8
COL9A3-205ENST00000466192 CDK17Q00537 523 aa20.03■□□□□ 0.8
COL9A3-205ENST00000466192 GPAT2Q6NUI2 795 aa20.03■□□□□ 0.8
COL9A3-205ENST00000466192 SWSAP1Q6NVH7 229 aa20.03■□□□□ 0.8
COL9A3-205ENST00000466192 CACNA2D4Q7Z3S7 1137 aa20.03■□□□□ 0.8
COL9A3-205ENST00000466192 BORCS6Q96GS4 357 aa20.03■□□□□ 0.8
COL9A3-205ENST00000466192 GBP3Q9H0R5 595 aa20.03■□□□□ 0.8
COL9A3-205ENST00000466192 AGPAT3Q9NRZ7 376 aa20.03■□□□□ 0.8
COL9A3-205ENST00000466192 RBPJLQ9UBG7 517 aa20.03■□□□□ 0.8
COL9A3-205ENST00000466192 POTEB2H3BUK9 544 aa20.02■□□□□ 0.8
COL9A3-205ENST00000466192 IPO7O95373 1038 aaKnown RBP20.02■□□□□ 0.8
COL9A3-205ENST00000466192 PSAPP07602 524 aa20.02■□□□□ 0.8
COL9A3-205ENST00000466192 MAPTP10636 758 aaKnown RBP20.02■□□□□ 0.8
COL9A3-205ENST00000466192 XRCC5P13010 732 aaKnown RBP20.02■□□□□ 0.8
COL9A3-205ENST00000466192 APBA1Q02410 837 aa20.02■□□□□ 0.8
COL9A3-205ENST00000466192 ABHD15Q6UXT9 468 aa20.02■□□□□ 0.8
COL9A3-205ENST00000466192 HS2ST1Q7LGA3 356 aa20.02■□□□□ 0.8
COL9A3-205ENST00000466192 CCDC60Q8IWA6 550 aaPredicted RBP20.02■□□□□ 0.8
COL9A3-205ENST00000466192 CCDC42Q96M95 316 aa20.02■□□□□ 0.8
COL9A3-205ENST00000466192 LSM14BQ9BX40 385 aaKnown RBP20.02■□□□□ 0.8
COL9A3-205ENST00000466192 EDEM3Q9BZQ6 932 aa20.02■□□□□ 0.8
COL9A3-205ENST00000466192 METTL14Q9HCE5 456 aaKnown RBP20.02■□□□□ 0.8
COL9A3-205ENST00000466192 MCM3APO60318 1980 aa20.02■□□□□ 0.8
COL9A3-205ENST00000466192 CYP27A1Q02318 531 aa20.02■□□□□ 0.8
COL9A3-205ENST00000466192 Q3C1V9 767 aa20.02■□□□□ 0.8
COL9A3-205ENST00000466192 SEPT14Q6ZU15 432 aa20.02■□□□□ 0.8
COL9A3-205ENST00000466192 FASTKD5Q7L8L6 764 aaKnown RBP20.02■□□□□ 0.8
COL9A3-205ENST00000466192 KIAA1328Q86T90 577 aa20.02■□□□□ 0.8
COL9A3-205ENST00000466192 PNMA8AQ86V59 439 aaPredicted RBP20.02■□□□□ 0.8
COL9A3-205ENST00000466192 FAM133AQ8N9E0 248 aa20.02■□□□□ 0.8
COL9A3-205ENST00000466192 ATP6V0A1Q93050 837 aa20.02■□□□□ 0.8
COL9A3-205ENST00000466192 TIPINQ9BVW5 301 aa20.02■□□□□ 0.8
COL9A3-205ENST00000466192 NLRC4Q9NPP4 1024 aa20.02■□□□□ 0.8
COL9A3-205ENST00000466192 ARHGAP20Q9P2F6 1191 aa20.02■□□□□ 0.8
COL9A3-205ENST00000466192 CTAGE9A4FU28 777 aa20.01■□□□□ 0.79
COL9A3-205ENST00000466192 EIF3CLB5ME19 914 aaKnown RBP20.01■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms