RNA–Protein interactions for RNA: ENST00000460408.5

RFC4-211, Transcript of replication factor C subunit 4, humanhuman

TSL 2

Gene RFC4, Length 628 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFC4-211ENST00000460408 PHC1P78364 1004 aa4.72□□□□□ -1.65
RFC4-211ENST00000460408 SMAD3P84022 425 aaKnown RBP4.72□□□□□ -1.65
RFC4-211ENST00000460408 OCRLQ01968 901 aa4.72□□□□□ -1.65
RFC4-211ENST00000460408 SMAD2Q15796 467 aaKnown RBP4.72□□□□□ -1.65
RFC4-211ENST00000460408 BRDTQ58F21 947 aaPredicted RBP4.72□□□□□ -1.65
RFC4-211ENST00000460408 CRB2Q5IJ48 1285 aa4.72□□□□□ -1.65
RFC4-211ENST00000460408 CC2D1AQ6P1N0 951 aaPredicted RBP4.72□□□□□ -1.65
RFC4-211ENST00000460408 FAM126BQ8IXS8 530 aa4.72□□□□□ -1.65
RFC4-211ENST00000460408 MBD6Q96DN6 1003 aa4.72□□□□□ -1.65
RFC4-211ENST00000460408 ELF4Q99607 663 aaPredicted RBP4.72□□□□□ -1.65
RFC4-211ENST00000460408 TRIM8Q9BZR9 551 aa4.72□□□□□ -1.65
RFC4-211ENST00000460408 NGRNQ9NPE2 291 aaKnown RBP4.72□□□□□ -1.65
RFC4-211ENST00000460408 HOMER2Q9NSB8 354 aa4.72□□□□□ -1.65
RFC4-211ENST00000460408 DTLQ9NZJ0 730 aa4.72□□□□□ -1.65
RFC4-211ENST00000460408 WASHC2CQ9Y4E1 1318 aa4.72□□□□□ -1.65
RFC4-211ENST00000460408 NPEPPSL1A6NEC2 478 aa4.71□□□□□ -1.66
RFC4-211ENST00000460408 RASSF10A6NK89 507 aa4.71□□□□□ -1.66
RFC4-211ENST00000460408 K7ESF4 209 aa4.71□□□□□ -1.66
RFC4-211ENST00000460408 HIP1RO75146 1068 aa4.71□□□□□ -1.66
RFC4-211ENST00000460408 LRG1P02750 347 aa4.71□□□□□ -1.66
RFC4-211ENST00000460408 AMHP03971 560 aa4.71□□□□□ -1.66
RFC4-211ENST00000460408 FAHP16930 419 aa4.71□□□□□ -1.66
RFC4-211ENST00000460408 PTX3P26022 381 aaPredicted RBP4.71□□□□□ -1.66
RFC4-211ENST00000460408 GUCY2FP51841 1108 aa4.71□□□□□ -1.66
RFC4-211ENST00000460408 KIF11P52732 1056 aa4.71□□□□□ -1.66
RFC4-211ENST00000460408 EPHB4P54760 987 aa4.71□□□□□ -1.66
RFC4-211ENST00000460408 TMPRSS15P98073 1019 aa4.71□□□□□ -1.66
RFC4-211ENST00000460408 EXOSC10Q01780 885 aaKnown RBP4.71□□□□□ -1.66
RFC4-211ENST00000460408 GRIN1Q05586 938 aa4.71□□□□□ -1.66
RFC4-211ENST00000460408 ADAM9Q13443 819 aa4.71□□□□□ -1.66
RFC4-211ENST00000460408 MTMR1Q13613 665 aa4.71□□□□□ -1.66
RFC4-211ENST00000460408 R3HDM1Q15032 1099 aaKnown RBP4.71□□□□□ -1.66
RFC4-211ENST00000460408 PLEKHG6Q3KR16 790 aa4.71□□□□□ -1.66
RFC4-211ENST00000460408 ATP13A4Q4VNC1 1196 aa4.71□□□□□ -1.66
RFC4-211ENST00000460408 PAN2Q504Q3 1202 aaKnown RBP4.71□□□□□ -1.66
RFC4-211ENST00000460408 CATSPEREQ5SY80 951 aa4.71□□□□□ -1.66
RFC4-211ENST00000460408 GPR158Q5T848 1215 aa4.71□□□□□ -1.66
RFC4-211ENST00000460408 BTBD8Q5XKL5 378 aa4.71□□□□□ -1.66
RFC4-211ENST00000460408 ESRP1Q6NXG1 681 aaKnown RBP4.71□□□□□ -1.66
RFC4-211ENST00000460408 COG1Q8WTW3 980 aa4.71□□□□□ -1.66
RFC4-211ENST00000460408 C16orf92Q96LL3 132 aa4.71□□□□□ -1.66
RFC4-211ENST00000460408 ZMAT4Q9H898 229 aa4.71□□□□□ -1.66
RFC4-211ENST00000460408 SLC5A4Q9NY91 659 aa4.71□□□□□ -1.66
RFC4-211ENST00000460408 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP4.7□□□□□ -1.66
RFC4-211ENST00000460408 ULK1O75385 1050 aa4.7□□□□□ -1.66
RFC4-211ENST00000460408 KATNA1O75449 491 aa4.7□□□□□ -1.66
RFC4-211ENST00000460408 PRKD3O94806 890 aa4.7□□□□□ -1.66
RFC4-211ENST00000460408 FNTBP49356 437 aa4.7□□□□□ -1.66
RFC4-211ENST00000460408 ERVK-21P61565 698 aa4.7□□□□□ -1.66
RFC4-211ENST00000460408 HERVK_113P62684 666 aa4.7□□□□□ -1.66
RFC4-211ENST00000460408 PPP2CBP62714 309 aa4.7□□□□□ -1.66
RFC4-211ENST00000460408 PPP2CAP67775 309 aa4.7□□□□□ -1.66
RFC4-211ENST00000460408 FAM50AQ14320 339 aaKnown RBP4.7□□□□□ -1.66
RFC4-211ENST00000460408 TERF2Q15554 542 aa4.7□□□□□ -1.66
RFC4-211ENST00000460408 ZNF174Q15697 407 aa4.7□□□□□ -1.66
RFC4-211ENST00000460408 CR1LQ2VPA4 569 aa4.7□□□□□ -1.66
RFC4-211ENST00000460408 C11orf74Q86VG3 221 aa4.7□□□□□ -1.66
RFC4-211ENST00000460408 CIR1Q86X95 450 aaPredicted RBP4.7□□□□□ -1.66
RFC4-211ENST00000460408 PROSER1Q86XN7 944 aa4.7□□□□□ -1.66
RFC4-211ENST00000460408 CLRN3Q8NCR9 226 aa4.7□□□□□ -1.66
RFC4-211ENST00000460408 SLC5A5Q92911 643 aa4.7□□□□□ -1.66
RFC4-211ENST00000460408 SCYL1Q96KG9 808 aa4.7□□□□□ -1.66
RFC4-211ENST00000460408 YTHDC1Q96MU7 727 aaKnown RBP4.7□□□□□ -1.66
RFC4-211ENST00000460408 ASPSCR1Q9BZE9 553 aa4.7□□□□□ -1.66
RFC4-211ENST00000460408 PUS7LQ9H0K6 701 aaKnown RBP4.7□□□□□ -1.66
RFC4-211ENST00000460408 VTA1Q9NP79 307 aa4.7□□□□□ -1.66
RFC4-211ENST00000460408 ACSS2Q9NR19 701 aa4.7□□□□□ -1.66
RFC4-211ENST00000460408 RIC8BQ9NVN3 520 aa4.7□□□□□ -1.66
RFC4-211ENST00000460408 BTBD7Q9P203 1132 aa4.7□□□□□ -1.66
RFC4-211ENST00000460408 PATE3B3GLJ2 98 aa4.69□□□□□ -1.66
RFC4-211ENST00000460408 CYP1A1P04798 512 aaPredicted RBP4.69□□□□□ -1.66
RFC4-211ENST00000460408 CYP17A1P05093 508 aa4.69□□□□□ -1.66
RFC4-211ENST00000460408 HMGB1P09429 215 aaKnown RBP4.69□□□□□ -1.66
RFC4-211ENST00000460408 IL13P35225 146 aa4.69□□□□□ -1.66
RFC4-211ENST00000460408 SELENOPP49908 381 aa4.69□□□□□ -1.66
RFC4-211ENST00000460408 LRRC32Q14392 662 aa4.69□□□□□ -1.66
RFC4-211ENST00000460408 TMEM132BQ14DG7 1078 aa4.69□□□□□ -1.66
RFC4-211ENST00000460408 DDB1Q16531 1140 aa4.69□□□□□ -1.66
RFC4-211ENST00000460408 BROXQ5VW32 411 aa4.69□□□□□ -1.66
RFC4-211ENST00000460408 PRAMEF18Q5VWM3 479 aa4.69□□□□□ -1.66
RFC4-211ENST00000460408 ZNF585AQ6P3V2 769 aa4.69□□□□□ -1.66
RFC4-211ENST00000460408 TEPPQ6URK8 271 aa4.69□□□□□ -1.66
RFC4-211ENST00000460408 EP400NLQ6ZTU2 488 aa4.69□□□□□ -1.66
RFC4-211ENST00000460408 RTN4RL1Q86UN2 441 aaPredicted RBP4.69□□□□□ -1.66
RFC4-211ENST00000460408 CNTD1Q8N815 330 aa4.69□□□□□ -1.66
RFC4-211ENST00000460408 ZNF610Q8N9Z0 462 aa4.69□□□□□ -1.66
RFC4-211ENST00000460408 IGDCC4Q8TDY8 1250 aa4.69□□□□□ -1.66
RFC4-211ENST00000460408 ASB15Q8WXK1 588 aa4.69□□□□□ -1.66
RFC4-211ENST00000460408 FOXRED1Q96CU9 486 aaPredicted RBP4.69□□□□□ -1.66
RFC4-211ENST00000460408 TOE1Q96GM8 510 aaKnown RBP4.69□□□□□ -1.66
RFC4-211ENST00000460408 WWC2-AS2Q96NR7 200 aa4.69□□□□□ -1.66
RFC4-211ENST00000460408 SEMA4AQ9H3S1 761 aa4.69□□□□□ -1.66
RFC4-211ENST00000460408 MS4A5Q9H3V2 200 aa4.69□□□□□ -1.66
RFC4-211ENST00000460408 DEF6Q9H4E7 631 aa4.69□□□□□ -1.66
RFC4-211ENST00000460408 PCIF1Q9H4Z3 704 aa4.69□□□□□ -1.66
RFC4-211ENST00000460408 WASF3Q9UPY6 502 aa4.69□□□□□ -1.66
RFC4-211ENST00000460408 TESMINQ9Y4I5 508 aa4.69□□□□□ -1.66
RFC4-211ENST00000460408 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP4.68□□□□□ -1.66
RFC4-211ENST00000460408 PRAMEF25A6NGN4 478 aa4.68□□□□□ -1.66
RFC4-211ENST00000460408 FOXP2O15409 715 aa4.68□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms