RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 EMBQ6PCB8 327 aa9.41□□□□□ -0.9
USP40-203ENST00000427112 CDAN1Q8IWY9 1227 aa9.41□□□□□ -0.9
USP40-203ENST00000427112 EPS8L3Q8TE67 593 aaKnown RBP9.41□□□□□ -0.9
USP40-203ENST00000427112 C1orf54Q8WWF1 131 aa9.41□□□□□ -0.9
USP40-203ENST00000427112 ATG4AQ8WYN0 398 aa9.41□□□□□ -0.9
USP40-203ENST00000427112 RPGRIP1Q96KN7 1286 aa9.41□□□□□ -0.9
USP40-203ENST00000427112 VIPAS39Q9H9C1 493 aa9.41□□□□□ -0.9
USP40-203ENST00000427112 CTNNAL1Q9UBT7 734 aa9.41□□□□□ -0.9
USP40-203ENST00000427112 DNAJC12Q9UKB3 198 aa9.41□□□□□ -0.9
USP40-203ENST00000427112 PNMA6FA0A0J9YX94 578 aa9.4□□□□□ -0.9
USP40-203ENST00000427112 GUCY2CP25092 1073 aa9.4□□□□□ -0.9
USP40-203ENST00000427112 ZNF844Q08AG5 666 aa9.4□□□□□ -0.9
USP40-203ENST00000427112 CBWD6Q4V339 395 aa9.4□□□□□ -0.9
USP40-203ENST00000427112 CBWD3Q5JTY5 395 aa9.4□□□□□ -0.9
USP40-203ENST00000427112 CBWD5Q5RIA9 395 aa9.4□□□□□ -0.9
USP40-203ENST00000427112 MEI1Q5TIA1 1274 aa9.4□□□□□ -0.9
USP40-203ENST00000427112 CCDC50Q8IVM0 306 aa9.4□□□□□ -0.9
USP40-203ENST00000427112 TBC1D16Q8TBP0 767 aa9.4□□□□□ -0.9
USP40-203ENST00000427112 SLC24A3Q9HC58 644 aa9.4□□□□□ -0.9
USP40-203ENST00000427112 LRRC4BQ9NT99 713 aa9.4□□□□□ -0.9
USP40-203ENST00000427112 GH2P01242 217 aa9.4□□□□□ -0.9
USP40-203ENST00000427112 TNFAIP3P21580 790 aa9.4□□□□□ -0.9
USP40-203ENST00000427112 PSMC4P43686 418 aa9.4□□□□□ -0.9
USP40-203ENST00000427112 JAG1P78504 1218 aa9.4□□□□□ -0.9
USP40-203ENST00000427112 LRRC63Q05C16 580 aa9.4□□□□□ -0.9
USP40-203ENST00000427112 SMAD1Q15797 465 aaKnown RBP9.4□□□□□ -0.9
USP40-203ENST00000427112 MMS22LQ6ZRQ5 1243 aa9.4□□□□□ -0.9
USP40-203ENST00000427112 TRIM59Q8IWR1 403 aa9.4□□□□□ -0.9
USP40-203ENST00000427112 CYFIP2Q96F07 1278 aa9.4□□□□□ -0.9
USP40-203ENST00000427112 INPP4AQ96PE3 977 aaPredicted RBP9.4□□□□□ -0.9
USP40-203ENST00000427112 TAF1DQ9H5J8 278 aaPredicted RBP9.4□□□□□ -0.9
USP40-203ENST00000427112 UBE2TQ9NPD8 197 aaPredicted RBP9.4□□□□□ -0.9
USP40-203ENST00000427112 LUC7LQ9NQ29 371 aaKnown RBP9.4□□□□□ -0.9
USP40-203ENST00000427112 GPRC5CQ9NQ84 441 aa9.4□□□□□ -0.9
USP40-203ENST00000427112 NID2Q14112 1375 aa9.4□□□□□ -0.9
USP40-203ENST00000427112 ADAMTS7Q9UKP4 1686 aa9.4□□□□□ -0.91
USP40-203ENST00000427112 CACNA1SQ13698 1873 aa9.4□□□□□ -0.91
USP40-203ENST00000427112 GJB6O95452 261 aa9.4□□□□□ -0.91
USP40-203ENST00000427112 HARSP12081 509 aaKnown RBP9.4□□□□□ -0.91
USP40-203ENST00000427112 HOXD13P35453 343 aa9.4□□□□□ -0.91
USP40-203ENST00000427112 MAP2K2P36507 400 aa9.4□□□□□ -0.91
USP40-203ENST00000427112 PRPHP41219 470 aa9.4□□□□□ -0.91
USP40-203ENST00000427112 LONRF1Q17RB8 773 aa9.4□□□□□ -0.91
USP40-203ENST00000427112 ODR4Q5SWX8 454 aa9.4□□□□□ -0.91
USP40-203ENST00000427112 RBM26Q5T8P6 1007 aaKnown RBP9.4□□□□□ -0.91
USP40-203ENST00000427112 HIBCHQ6NVY1 386 aaPredicted RBP9.4□□□□□ -0.91
USP40-203ENST00000427112 B4GALNT4Q76KP1 1039 aa9.4□□□□□ -0.91
USP40-203ENST00000427112 IQCKQ8N0W5 287 aa9.4□□□□□ -0.91
USP40-203ENST00000427112 PPM1KQ8N3J5 372 aa9.4□□□□□ -0.91
USP40-203ENST00000427112 FBXO25Q8TCJ0 367 aa9.4□□□□□ -0.91
USP40-203ENST00000427112 RAPGEF5Q92565 580 aa9.4□□□□□ -0.91
USP40-203ENST00000427112 SAAL1Q96ER3 474 aa9.4□□□□□ -0.91
USP40-203ENST00000427112 ZNF668Q96K58 619 aaPredicted RBP9.4□□□□□ -0.91
USP40-203ENST00000427112 MTA3Q9BTC8 594 aa9.4□□□□□ -0.91
USP40-203ENST00000427112 VEZTQ9HBM0 779 aa9.4□□□□□ -0.91
USP40-203ENST00000427112 USTQ9Y2C2 406 aa9.4□□□□□ -0.91
USP40-203ENST00000427112 PGRMC1O00264 195 aaKnown RBP9.39□□□□□ -0.91
USP40-203ENST00000427112 ZBTB5O15062 677 aa9.39□□□□□ -0.91
USP40-203ENST00000427112 ASTE1Q2TB18 679 aaPredicted RBP9.39□□□□□ -0.91
USP40-203ENST00000427112 CDC42EP5Q6NZY7 148 aa9.39□□□□□ -0.91
USP40-203ENST00000427112 CLEC4GQ6UXB4 293 aa9.39□□□□□ -0.91
USP40-203ENST00000427112 CCDC13Q8IYE1 715 aa9.39□□□□□ -0.91
USP40-203ENST00000427112 FAM186BQ8IYM0 893 aa9.39□□□□□ -0.91
USP40-203ENST00000427112 KCNV2Q8TDN2 545 aa9.39□□□□□ -0.91
USP40-203ENST00000427112 ACSF2Q96CM8 615 aaPredicted RBP9.39□□□□□ -0.91
USP40-203ENST00000427112 PI4K2AQ9BTU6 479 aa9.39□□□□□ -0.91
USP40-203ENST00000427112 TRIM7Q9C029 511 aa9.39□□□□□ -0.91
USP40-203ENST00000427112 SEMA4AQ9H3S1 761 aa9.39□□□□□ -0.91
USP40-203ENST00000427112 L3MBTL1Q9Y468 752 aa9.39□□□□□ -0.91
USP40-203ENST00000427112 FOXN3O00409 490 aaPredicted RBP9.39□□□□□ -0.91
USP40-203ENST00000427112 DNM1LO00429 736 aa9.39□□□□□ -0.91
USP40-203ENST00000427112 RPS6KA4O75676 772 aa9.39□□□□□ -0.91
USP40-203ENST00000427112 EPB41P11171 864 aaKnown RBP9.39□□□□□ -0.91
USP40-203ENST00000427112 ICA1Q05084 483 aa9.39□□□□□ -0.91
USP40-203ENST00000427112 GIT2Q14161 759 aa9.39□□□□□ -0.91
USP40-203ENST00000427112 CERKLQ49MI3 558 aaPredicted RBP9.39□□□□□ -0.91
USP40-203ENST00000427112 IRF2BP2Q7Z5L9 587 aa9.39□□□□□ -0.91
USP40-203ENST00000427112 CCDC105Q8IYK2 499 aa9.39□□□□□ -0.91
USP40-203ENST00000427112 TPCN2Q8NHX9 752 aa9.39□□□□□ -0.91
USP40-203ENST00000427112 DHX38Q92620 1227 aaKnown RBP9.39□□□□□ -0.91
USP40-203ENST00000427112 ALG3Q92685 438 aa9.39□□□□□ -0.91
USP40-203ENST00000427112 HAUS1Q96CS2 278 aa9.39□□□□□ -0.91
USP40-203ENST00000427112 STK17AQ9UEE5 414 aa9.39□□□□□ -0.91
USP40-203ENST00000427112 TRIM33Q9UPN9 1127 aa9.39□□□□□ -0.91
USP40-203ENST00000427112 CEP83Q9Y592 693 aa9.39□□□□□ -0.91
USP40-203ENST00000427112 DNAH12Q6ZR08 3092 aa9.39□□□□□ -0.91
USP40-203ENST00000427112 PVALEFA0A1B0GWK0 134 aa9.39□□□□□ -0.91
USP40-203ENST00000427112 ANKRD63C9JTQ0 380 aa9.39□□□□□ -0.91
USP40-203ENST00000427112 LAD1O00515 517 aa9.39□□□□□ -0.91
USP40-203ENST00000427112 MEFVO15553 781 aaPredicted RBP9.39□□□□□ -0.91
USP40-203ENST00000427112 TUBBP07437 444 aa9.39□□□□□ -0.91
USP40-203ENST00000427112 DLATP10515 647 aaKnown RBP9.39□□□□□ -0.91
USP40-203ENST00000427112 SHMT1P34896 483 aa9.39□□□□□ -0.91
USP40-203ENST00000427112 STAT1P42224 750 aa9.39□□□□□ -0.91
USP40-203ENST00000427112 SLC29A2Q14542 456 aa9.39□□□□□ -0.91
USP40-203ENST00000427112 KNOP1Q1ED39 458 aaKnown RBP9.39□□□□□ -0.91
USP40-203ENST00000427112 FAM47EQ6ZV65 393 aa9.39□□□□□ -0.91
USP40-203ENST00000427112 PASD1Q8IV76 773 aa9.39□□□□□ -0.91
USP40-203ENST00000427112 LNX1Q8TBB1 728 aaPredicted RBP9.39□□□□□ -0.91
USP40-203ENST00000427112 PRMT1Q99873 361 aaKnown RBP9.39□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms