RNA–Protein interactions for RNA: ENST00000415083.6

SS18-203, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SS18, Length 3,414 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-203ENST00000415083 COA1Q9GZY4 146 aa10.77□□□□□ -0.68
SS18-203ENST00000415083 EPN3Q9H201 632 aa10.77□□□□□ -0.68
SS18-203ENST00000415083 FBXL5Q9UKA1 691 aa10.77□□□□□ -0.68
SS18-203ENST00000415083 BACH1O14867 736 aa10.77□□□□□ -0.69
SS18-203ENST00000415083 CEP104O60308 925 aa10.77□□□□□ -0.69
SS18-203ENST00000415083 BUB1BO60566 1050 aaPredicted RBP10.77□□□□□ -0.69
SS18-203ENST00000415083 SLITRK3O94933 977 aa10.77□□□□□ -0.69
SS18-203ENST00000415083 TMOD1P28289 359 aa10.77□□□□□ -0.69
SS18-203ENST00000415083 CIITAP33076 1130 aa10.77□□□□□ -0.69
SS18-203ENST00000415083 CTTNQ14247 550 aaKnown RBP10.77□□□□□ -0.69
SS18-203ENST00000415083 MYCBPAPQ8TBZ2 947 aa10.77□□□□□ -0.69
SS18-203ENST00000415083 TRIM51Q9BSJ1 452 aa10.77□□□□□ -0.69
SS18-203ENST00000415083 GCNT4Q9P109 453 aa10.77□□□□□ -0.69
SS18-203ENST00000415083 BRWD3Q6RI45 1802 aa10.77□□□□□ -0.69
SS18-203ENST00000415083 TISP43B9A030 160 aa10.77□□□□□ -0.69
SS18-203ENST00000415083 F8VZ95 297 aa10.77□□□□□ -0.69
SS18-203ENST00000415083 ZEB2O60315 1214 aa10.77□□□□□ -0.69
SS18-203ENST00000415083 EVI5O60447 810 aa10.77□□□□□ -0.69
SS18-203ENST00000415083 MDH1P40925 334 aaKnown RBP10.77□□□□□ -0.69
SS18-203ENST00000415083 CCDC70Q6NSX1 233 aa10.77□□□□□ -0.69
SS18-203ENST00000415083 SLF2Q8IX21 1173 aa10.77□□□□□ -0.69
SS18-203ENST00000415083 WHAMMQ8TF30 809 aa10.77□□□□□ -0.69
SS18-203ENST00000415083 PPM1EQ8WY54 764 aa10.77□□□□□ -0.69
SS18-203ENST00000415083 ALG3Q92685 438 aa10.77□□□□□ -0.69
SS18-203ENST00000415083 TYW1Q9NV66 732 aaKnown RBP10.77□□□□□ -0.69
SS18-203ENST00000415083 PPP1R37O75864 691 aa10.76□□□□□ -0.69
SS18-203ENST00000415083 CLSTN1O94985 981 aa10.76□□□□□ -0.69
SS18-203ENST00000415083 NDUFB10O96000 172 aa10.76□□□□□ -0.69
SS18-203ENST00000415083 CRKP46108 304 aa10.76□□□□□ -0.69
SS18-203ENST00000415083 CEP85LQ5SZL2 805 aa10.76□□□□□ -0.69
SS18-203ENST00000415083 HHIPL2Q6UWX4 724 aa10.76□□□□□ -0.69
SS18-203ENST00000415083 TMC3Q7Z5M5 1100 aa10.76□□□□□ -0.69
SS18-203ENST00000415083 GLYCTKQ8IVS8 523 aa10.76□□□□□ -0.69
SS18-203ENST00000415083 MICALL1Q8N3F8 863 aa10.76□□□□□ -0.69
SS18-203ENST00000415083 CCT8L2Q96SF2 557 aa10.76□□□□□ -0.69
SS18-203ENST00000415083 BUD13Q9BRD0 619 aaKnown RBP eCLIP10.76□□□□□ -0.69
SS18-203ENST00000415083 ZDHHC18Q9NUE0 388 aa10.76□□□□□ -0.69
SS18-203ENST00000415083 NYAP2Q9P242 653 aa10.76□□□□□ -0.69
SS18-203ENST00000415083 FRMD4AQ9P2Q2 1039 aaPredicted RBP10.76□□□□□ -0.69
SS18-203ENST00000415083 F5H6K3 240 aa10.76□□□□□ -0.69
SS18-203ENST00000415083 DLG4P78352 724 aa10.76□□□□□ -0.69
SS18-203ENST00000415083 KLRC3Q07444 240 aa10.76□□□□□ -0.69
SS18-203ENST00000415083 PHLDB3Q6NSJ2 640 aa10.76□□□□□ -0.69
SS18-203ENST00000415083 DAW1Q8N136 415 aa10.76□□□□□ -0.69
SS18-203ENST00000415083 STRA6Q9BX79 667 aa10.76□□□□□ -0.69
SS18-203ENST00000415083 EFCC1Q9HA90 598 aa10.76□□□□□ -0.69
SS18-203ENST00000415083 DMAC2Q9NW81 257 aa10.76□□□□□ -0.69
SS18-203ENST00000415083 SUCLA2Q9P2R7 463 aaPredicted RBP10.76□□□□□ -0.69
SS18-203ENST00000415083 PCDHB13Q9Y5F0 798 aa10.76□□□□□ -0.69
SS18-203ENST00000415083 SHBGP04278 402 aa10.75□□□□□ -0.69
SS18-203ENST00000415083 TRIM49P0CI25 452 aa10.75□□□□□ -0.69
SS18-203ENST00000415083 TRIM49CP0CI26 452 aa10.75□□□□□ -0.69
SS18-203ENST00000415083 XRCC5P13010 732 aaKnown RBP10.75□□□□□ -0.69
SS18-203ENST00000415083 MARCKSL1P49006 195 aa10.75□□□□□ -0.69
SS18-203ENST00000415083 GTF2A1P52655 376 aaPredicted RBP10.75□□□□□ -0.69
SS18-203ENST00000415083 C1orf220Q5T0J3 134 aa10.75□□□□□ -0.69
SS18-203ENST00000415083 OTOP1Q7RTM1 612 aa10.75□□□□□ -0.69
SS18-203ENST00000415083 SLC35G2Q8TBE7 412 aa10.75□□□□□ -0.69
SS18-203ENST00000415083 DBNDD1Q9H9R9 158 aa10.75□□□□□ -0.69
SS18-203ENST00000415083 CHORDC1Q9UHD1 332 aaPredicted RBP10.75□□□□□ -0.69
SS18-203ENST00000415083 SUGT1Q9Y2Z0 365 aa10.75□□□□□ -0.69
SS18-203ENST00000415083 PCDHA3Q9Y5H8 950 aa10.75□□□□□ -0.69
SS18-203ENST00000415083 NCANO14594 1321 aa10.75□□□□□ -0.69
SS18-203ENST00000415083 EBAG9O00559 213 aa10.75□□□□□ -0.69
SS18-203ENST00000415083 RAD21O60216 631 aa10.75□□□□□ -0.69
SS18-203ENST00000415083 MAPK7Q13164 816 aa10.75□□□□□ -0.69
SS18-203ENST00000415083 NLRP14Q86W24 1093 aa10.75□□□□□ -0.69
SS18-203ENST00000415083 SLFN12Q8IYM2 578 aa10.75□□□□□ -0.69
SS18-203ENST00000415083 PLEKHO2Q8TD55 490 aa10.75□□□□□ -0.69
SS18-203ENST00000415083 U2AF1L4Q8WU68 220 aaKnown RBP10.75□□□□□ -0.69
SS18-203ENST00000415083 DCAF4Q8WV16 495 aa10.75□□□□□ -0.69
SS18-203ENST00000415083 PBKQ96KB5 322 aa10.75□□□□□ -0.69
SS18-203ENST00000415083 ZDHHC15Q96MV8 337 aa10.75□□□□□ -0.69
SS18-203ENST00000415083 MTFR1LQ9H019 292 aa10.75□□□□□ -0.69
SS18-203ENST00000415083 ADAM7Q9H2U9 754 aa10.75□□□□□ -0.69
SS18-203ENST00000415083 BMP2KQ9NSY1 1161 aaPredicted RBP10.75□□□□□ -0.69
SS18-203ENST00000415083 ATP8B3O60423 1300 aa10.75□□□□□ -0.69
SS18-203ENST00000415083 A0A0A6YYK5 440 aaPredicted RBP10.75□□□□□ -0.69
SS18-203ENST00000415083 TMCO5BA8MYB1 307 aa10.75□□□□□ -0.69
SS18-203ENST00000415083 TBX3O15119 743 aa10.75□□□□□ -0.69
SS18-203ENST00000415083 MARCH6O60337 910 aa10.75□□□□□ -0.69
SS18-203ENST00000415083 PSMD10O75832 226 aa10.75□□□□□ -0.69
SS18-203ENST00000415083 GCNT3O95395 438 aa10.75□□□□□ -0.69
SS18-203ENST00000415083 ADRA2BP18089 450 aa10.75□□□□□ -0.69
SS18-203ENST00000415083 HNRNPH1P31943 449 aaKnown RBP10.75□□□□□ -0.69
SS18-203ENST00000415083 AP3B2Q13367 1082 aa10.75□□□□□ -0.69
SS18-203ENST00000415083 PLS1Q14651 629 aa10.75□□□□□ -0.69
SS18-203ENST00000415083 ZDHHC24Q6UX98 284 aa10.75□□□□□ -0.69
SS18-203ENST00000415083 SLC20A1Q8WUM9 679 aa10.75□□□□□ -0.69
SS18-203ENST00000415083 DYDC2Q96IM9 177 aa10.75□□□□□ -0.69
SS18-203ENST00000415083 POLR3CQ9BUI4 534 aaPredicted RBP10.75□□□□□ -0.69
SS18-203ENST00000415083 OLFML3Q9NRN5 406 aa10.75□□□□□ -0.69
SS18-203ENST00000415083 USP21Q9UK80 565 aa10.75□□□□□ -0.69
SS18-203ENST00000415083 DNM3Q9UQ16 869 aa10.75□□□□□ -0.69
SS18-203ENST00000415083 SPATA31A6Q5VVP1 1343 aa10.75□□□□□ -0.69
SS18-203ENST00000415083 ATXN2Q99700 1313 aaKnown RBP10.75□□□□□ -0.69
SS18-203ENST00000415083 PGRMC1O00264 195 aaKnown RBP10.74□□□□□ -0.69
SS18-203ENST00000415083 NDUFAB1O14561 156 aa10.74□□□□□ -0.69
SS18-203ENST00000415083 SLC16A3O15427 465 aaKnown RBP10.74□□□□□ -0.69
SS18-203ENST00000415083 SLC26A4O43511 780 aa10.74□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms