RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 RINT1Q6NUQ1 792 aa7.83□□□□□ -1.16
LIMA1-202ENST00000394943 MCPH1Q8NEM0 835 aa7.83□□□□□ -1.16
LIMA1-202ENST00000394943 TCP11Q8WWU5 503 aa7.83□□□□□ -1.16
LIMA1-202ENST00000394943 LRRC27Q9C0I9 530 aa7.83□□□□□ -1.16
LIMA1-202ENST00000394943 AZI2Q9H6S1 392 aa7.83□□□□□ -1.16
LIMA1-202ENST00000394943 STARD7Q9NQZ5 370 aa7.83□□□□□ -1.16
LIMA1-202ENST00000394943 A0A1W2PPC1 479 aa7.83□□□□□ -1.16
LIMA1-202ENST00000394943 NOP56O00567 594 aaKnown RBP7.83□□□□□ -1.16
LIMA1-202ENST00000394943 TIMP1P01033 207 aa7.83□□□□□ -1.16
LIMA1-202ENST00000394943 PROZP22891 400 aa7.83□□□□□ -1.16
LIMA1-202ENST00000394943 SNRPFP62306 86 aaKnown RBP7.83□□□□□ -1.16
LIMA1-202ENST00000394943 CXCL17Q6UXB2 119 aa7.83□□□□□ -1.16
LIMA1-202ENST00000394943 CCDC73Q6ZRK6 1079 aa7.83□□□□□ -1.16
LIMA1-202ENST00000394943 CCDC155Q8N6L0 562 aa7.83□□□□□ -1.16
LIMA1-202ENST00000394943 ARHGAP28Q9P2N2 729 aa7.83□□□□□ -1.16
LIMA1-202ENST00000394943 ATG2AQ2TAZ0 1938 aa7.83□□□□□ -1.16
LIMA1-202ENST00000394943 KAT6AQ92794 2004 aa7.82□□□□□ -1.16
LIMA1-202ENST00000394943 BACH1O14867 736 aa7.82□□□□□ -1.16
LIMA1-202ENST00000394943 PTMSP20962 102 aa7.82□□□□□ -1.16
LIMA1-202ENST00000394943 PSMC6P62333 389 aa7.82□□□□□ -1.16
LIMA1-202ENST00000394943 FAM189BP81408 668 aa7.82□□□□□ -1.16
LIMA1-202ENST00000394943 NCAPH2Q6IBW4 605 aa7.82□□□□□ -1.16
LIMA1-202ENST00000394943 TNS4Q8IZW8 715 aa7.82□□□□□ -1.16
LIMA1-202ENST00000394943 KIFAP3Q92845 792 aa7.82□□□□□ -1.16
LIMA1-202ENST00000394943 WNT8BQ93098 351 aa7.82□□□□□ -1.16
LIMA1-202ENST00000394943 SPATA32Q96LK8 384 aa7.82□□□□□ -1.16
LIMA1-202ENST00000394943 RGL1Q9NZL6 768 aa7.82□□□□□ -1.16
LIMA1-202ENST00000394943 TCEAL9Q9UHQ7 104 aa7.82□□□□□ -1.16
LIMA1-202ENST00000394943 GBF1Q92538 1859 aa7.82□□□□□ -1.16
LIMA1-202ENST00000394943 VWA3AA6NCI4 1184 aa7.82□□□□□ -1.16
LIMA1-202ENST00000394943 ABLIM1O14639 778 aa7.82□□□□□ -1.16
LIMA1-202ENST00000394943 MYL3P08590 195 aa7.82□□□□□ -1.16
LIMA1-202ENST00000394943 PLCG1P19174 1290 aa7.82□□□□□ -1.16
LIMA1-202ENST00000394943 CRYBB1P53674 252 aaPredicted RBP7.82□□□□□ -1.16
LIMA1-202ENST00000394943 GIT2Q14161 759 aa7.82□□□□□ -1.16
LIMA1-202ENST00000394943 STK38Q15208 465 aa7.82□□□□□ -1.16
LIMA1-202ENST00000394943 CT47A1Q5JQC4 288 aaPredicted RBP7.82□□□□□ -1.16
LIMA1-202ENST00000394943 RUFY4Q6ZNE9 571 aa7.82□□□□□ -1.16
LIMA1-202ENST00000394943 USP49Q70CQ1 688 aa7.82□□□□□ -1.16
LIMA1-202ENST00000394943 SNX29Q8TEQ0 813 aa7.82□□□□□ -1.16
LIMA1-202ENST00000394943 APBB2Q92870 758 aa7.82□□□□□ -1.16
LIMA1-202ENST00000394943 EPSTI1Q96J88 318 aa7.82□□□□□ -1.16
LIMA1-202ENST00000394943 WNT8AQ9H1J5 351 aa7.82□□□□□ -1.16
LIMA1-202ENST00000394943 FOXD4L1Q9NU39 408 aa7.82□□□□□ -1.16
LIMA1-202ENST00000394943 TUBE1Q9UJT0 475 aa7.82□□□□□ -1.16
LIMA1-202ENST00000394943 TRIM43BA6NCK2 446 aa7.82□□□□□ -1.16
LIMA1-202ENST00000394943 TLR3O15455 904 aaKnown RBP7.82□□□□□ -1.16
LIMA1-202ENST00000394943 CLTBP09497 229 aa7.82□□□□□ -1.16
LIMA1-202ENST00000394943 PFKFB1P16118 471 aa7.82□□□□□ -1.16
LIMA1-202ENST00000394943 NAMPTP43490 491 aa7.82□□□□□ -1.16
LIMA1-202ENST00000394943 DPYDQ12882 1025 aa7.82□□□□□ -1.16
LIMA1-202ENST00000394943 PPFIA1Q13136 1202 aa7.82□□□□□ -1.16
LIMA1-202ENST00000394943 MXD4Q14582 209 aaPredicted RBP7.82□□□□□ -1.16
LIMA1-202ENST00000394943 SRGAP1Q7Z6B7 1085 aa7.82□□□□□ -1.16
LIMA1-202ENST00000394943 BANK1Q8NDB2 785 aa7.82□□□□□ -1.16
LIMA1-202ENST00000394943 MRPS27Q92552 414 aaKnown RBP7.82□□□□□ -1.16
LIMA1-202ENST00000394943 TRIM43Q96BQ3 446 aaPredicted RBP7.82□□□□□ -1.16
LIMA1-202ENST00000394943 CCDC51Q96ER9 411 aa7.82□□□□□ -1.16
LIMA1-202ENST00000394943 PAWRQ96IZ0 340 aaKnown RBP7.82□□□□□ -1.16
LIMA1-202ENST00000394943 ZFP91Q96JP5 570 aaPredicted RBP7.82□□□□□ -1.16
LIMA1-202ENST00000394943 CLIC6Q96NY7 704 aa7.82□□□□□ -1.16
LIMA1-202ENST00000394943 HTATIP2Q9BUP3 242 aa7.82□□□□□ -1.16
LIMA1-202ENST00000394943 FZD8Q9H461 694 aa7.82□□□□□ -1.16
LIMA1-202ENST00000394943 IFT122Q9HBG6 1241 aa7.82□□□□□ -1.16
LIMA1-202ENST00000394943 ERVK-5Q9HDB9 667 aa7.82□□□□□ -1.16
LIMA1-202ENST00000394943 CCDC39Q9UFE4 941 aa7.82□□□□□ -1.16
LIMA1-202ENST00000394943 PP2D1A8MPX8 630 aa7.81□□□□□ -1.16
LIMA1-202ENST00000394943 HSP90AA1P07900 732 aaKnown RBP7.81□□□□□ -1.16
LIMA1-202ENST00000394943 CDC25AP30304 524 aa7.81□□□□□ -1.16
LIMA1-202ENST00000394943 AXLP30530 894 aa7.81□□□□□ -1.16
LIMA1-202ENST00000394943 GPC3P51654 580 aa7.81□□□□□ -1.16
LIMA1-202ENST00000394943 FOSBP53539 338 aa7.81□□□□□ -1.16
LIMA1-202ENST00000394943 FAM160A1Q05DH4 1040 aa7.81□□□□□ -1.16
LIMA1-202ENST00000394943 ALCAMQ13740 583 aa7.81□□□□□ -1.16
LIMA1-202ENST00000394943 PLEKHG4Q58EX7 1191 aa7.81□□□□□ -1.16
LIMA1-202ENST00000394943 KANK3Q6NY19 840 aa7.81□□□□□ -1.16
LIMA1-202ENST00000394943 C12orf56Q8IXR9 622 aa7.81□□□□□ -1.16
LIMA1-202ENST00000394943 LARP4BQ92615 738 aaKnown RBP7.81□□□□□ -1.16
LIMA1-202ENST00000394943 RC3H2Q9HBD1 1191 aaKnown RBP7.81□□□□□ -1.16
LIMA1-202ENST00000394943 ATP6V0A4Q9HBG4 840 aa7.81□□□□□ -1.16
LIMA1-202ENST00000394943 PTPRHQ9HD43 1115 aa7.81□□□□□ -1.16
LIMA1-202ENST00000394943 DNM3Q9UQ16 869 aa7.81□□□□□ -1.16
LIMA1-202ENST00000394943 BAIAP3O94812 1187 aa7.81□□□□□ -1.16
LIMA1-202ENST00000394943 CHRNA1P02708 482 aa7.81□□□□□ -1.16
LIMA1-202ENST00000394943 PLA2G4BP0C869 781 aa7.81□□□□□ -1.16
LIMA1-202ENST00000394943 CKBP12277 381 aa7.81□□□□□ -1.16
LIMA1-202ENST00000394943 CCT6AP40227 531 aaKnown RBP7.81□□□□□ -1.16
LIMA1-202ENST00000394943 MRPS6P82932 125 aaKnown RBP7.81□□□□□ -1.16
LIMA1-202ENST00000394943 GTF2BQ00403 316 aa7.81□□□□□ -1.16
LIMA1-202ENST00000394943 PSMD2Q13200 908 aa7.81□□□□□ -1.16
LIMA1-202ENST00000394943 MBTPS1Q14703 1052 aa7.81□□□□□ -1.16
LIMA1-202ENST00000394943 MFSD5Q6N075 450 aa7.81□□□□□ -1.16
LIMA1-202ENST00000394943 TRIM50Q86XT4 487 aa7.81□□□□□ -1.16
LIMA1-202ENST00000394943 CALML4Q96GE6 196 aa7.81□□□□□ -1.16
LIMA1-202ENST00000394943 PRIMPOLQ96LW4 560 aa7.81□□□□□ -1.16
LIMA1-202ENST00000394943 TSPAN18Q96SJ8 248 aa7.81□□□□□ -1.16
LIMA1-202ENST00000394943 CHST12Q9NRB3 414 aa7.81□□□□□ -1.16
LIMA1-202ENST00000394943 DDX19AQ9NUU7 478 aaKnown RBP7.81□□□□□ -1.16
LIMA1-202ENST00000394943 TSC2P49815 1807 aa7.81□□□□□ -1.16
LIMA1-202ENST00000394943 EVPLQ92817 2033 aa7.81□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms