RNA–Protein interactions for RNA: ENST00000389805.8

SQSTM1-202, Transcript of sequestosome 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SQSTM1, Length 2,986 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-202ENST00000389805 ARHGAP4P98171 946 aa19.27■□□□□ 0.68
SQSTM1-202ENST00000389805 LRRC63Q05C16 580 aa19.27■□□□□ 0.68
SQSTM1-202ENST00000389805 TATDN1Q6P1N9 297 aa19.27■□□□□ 0.68
SQSTM1-202ENST00000389805 TLDC1Q6P9B6 456 aa19.27■□□□□ 0.68
SQSTM1-202ENST00000389805 PNMA8AQ86V59 439 aaPredicted RBP19.27■□□□□ 0.68
SQSTM1-202ENST00000389805 IDI2Q9BXS1 227 aa19.27■□□□□ 0.68
SQSTM1-202ENST00000389805 TAF1DQ9H5J8 278 aaPredicted RBP19.27■□□□□ 0.68
SQSTM1-202ENST00000389805 L3MBTL1Q9Y468 752 aa19.27■□□□□ 0.68
SQSTM1-202ENST00000389805 A0A1W2PRG0 241 aa19.26■□□□□ 0.67
SQSTM1-202ENST00000389805 CLTAP09496 248 aa19.26■□□□□ 0.67
SQSTM1-202ENST00000389805 HNRNPH3P31942 346 aaKnown RBP19.26■□□□□ 0.67
SQSTM1-202ENST00000389805 CCNHP51946 323 aaPredicted RBP19.26■□□□□ 0.67
SQSTM1-202ENST00000389805 KCNMA1Q12791 1236 aa19.26■□□□□ 0.67
SQSTM1-202ENST00000389805 ARSHQ5FYA8 562 aa19.26■□□□□ 0.67
SQSTM1-202ENST00000389805 FIGNQ5HY92 759 aa19.26■□□□□ 0.67
SQSTM1-202ENST00000389805 NOD2Q9HC29 1040 aa19.26■□□□□ 0.67
SQSTM1-202ENST00000389805 COL11A2P13942 1736 aaPredicted RBP19.26■□□□□ 0.67
SQSTM1-202ENST00000389805 SMCHD1A6NHR9 2005 aa19.26■□□□□ 0.67
SQSTM1-202ENST00000389805 FAM86B1E9PN63 330 aa19.26■□□□□ 0.67
SQSTM1-202ENST00000389805 BUB1BO60566 1050 aaPredicted RBP19.26■□□□□ 0.67
SQSTM1-202ENST00000389805 FAM86B2P0C5J1 330 aa19.26■□□□□ 0.67
SQSTM1-202ENST00000389805 CYP11B2P19099 503 aa19.26■□□□□ 0.67
SQSTM1-202ENST00000389805 PPP2R2AP63151 447 aa19.26■□□□□ 0.67
SQSTM1-202ENST00000389805 GKAP1Q5VSY0 366 aaPredicted RBP19.26■□□□□ 0.67
SQSTM1-202ENST00000389805 CCDC50Q8IVM0 306 aa19.26■□□□□ 0.67
SQSTM1-202ENST00000389805 PACSIN1Q9BY11 444 aa19.26■□□□□ 0.67
SQSTM1-202ENST00000389805 PLCB1Q9NQ66 1216 aa19.26■□□□□ 0.67
SQSTM1-202ENST00000389805 FBXL5Q9UKA1 691 aa19.26■□□□□ 0.67
SQSTM1-202ENST00000389805 H0YIN7 160 aa19.26■□□□□ 0.67
SQSTM1-202ENST00000389805 PEX19P40855 299 aa19.26■□□□□ 0.67
SQSTM1-202ENST00000389805 ELF3P78545 371 aaPredicted RBP19.26■□□□□ 0.67
SQSTM1-202ENST00000389805 ZCWPW2Q504Y3 356 aa19.26■□□□□ 0.67
SQSTM1-202ENST00000389805 CATSPER3Q86XQ3 398 aa19.26■□□□□ 0.67
SQSTM1-202ENST00000389805 DCAF4Q8WV16 495 aa19.26■□□□□ 0.67
SQSTM1-202ENST00000389805 BMP2KQ9NSY1 1161 aaPredicted RBP19.26■□□□□ 0.67
SQSTM1-202ENST00000389805 PCDHA2Q9Y5H9 948 aa19.26■□□□□ 0.67
SQSTM1-202ENST00000389805 H0YGN5 161 aa19.25■□□□□ 0.67
SQSTM1-202ENST00000389805 KCNK3O14649 394 aa19.25■□□□□ 0.67
SQSTM1-202ENST00000389805 LCA5LO95447 670 aa19.25■□□□□ 0.67
SQSTM1-202ENST00000389805 ATP6V1G2O95670 118 aa19.25■□□□□ 0.67
SQSTM1-202ENST00000389805 SLC8A1P32418 973 aa19.25■□□□□ 0.67
SQSTM1-202ENST00000389805 CASP5P51878 434 aa19.25■□□□□ 0.67
SQSTM1-202ENST00000389805 PSMD2Q13200 908 aa19.25■□□□□ 0.67
SQSTM1-202ENST00000389805 PABPC4Q13310 644 aaKnown RBP eCLIP19.25■□□□□ 0.678e-10■■■□□ 18
SQSTM1-202ENST00000389805 BAP1Q92560 729 aa19.25■□□□□ 0.67
SQSTM1-202ENST00000389805 TSG101Q99816 390 aa19.25■□□□□ 0.67
SQSTM1-202ENST00000389805 ATP6V0A4Q9HBG4 840 aa19.25■□□□□ 0.67
SQSTM1-202ENST00000389805 NFS1Q9Y697 457 aa19.25■□□□□ 0.67
SQSTM1-202ENST00000389805 QSER1Q2KHR3 1735 aa19.25■□□□□ 0.67
SQSTM1-202ENST00000389805 NRXN2Q9P2S2 1712 aa19.25■□□□□ 0.67
SQSTM1-202ENST00000389805 PJA2O43164 708 aa19.25■□□□□ 0.67
SQSTM1-202ENST00000389805 ECE1P42892 770 aa19.25■□□□□ 0.67
SQSTM1-202ENST00000389805 USP11P51784 963 aa19.25■□□□□ 0.67
SQSTM1-202ENST00000389805 FKBP3Q00688 224 aaKnown RBP19.25■□□□□ 0.67
SQSTM1-202ENST00000389805 CYP4A11Q02928 519 aa19.25■□□□□ 0.67
SQSTM1-202ENST00000389805 SAMD1Q6SPF0 538 aaPredicted RBP19.25■□□□□ 0.67
SQSTM1-202ENST00000389805 FMNL3Q8IVF7 1028 aa19.25■□□□□ 0.67
SQSTM1-202ENST00000389805 NSMCE1Q8WV22 266 aa19.25■□□□□ 0.67
SQSTM1-202ENST00000389805 SCFD1Q8WVM8 642 aa19.25■□□□□ 0.67
SQSTM1-202ENST00000389805 AMNQ9BXJ7 453 aa19.25■□□□□ 0.67
SQSTM1-202ENST00000389805 FRMD4AQ9P2Q2 1039 aaPredicted RBP19.25■□□□□ 0.67
SQSTM1-202ENST00000389805 SIPA1L1O43166 1804 aa19.24■□□□□ 0.67
SQSTM1-202ENST00000389805 RTN2O75298 545 aa19.24■□□□□ 0.67
SQSTM1-202ENST00000389805 KRT18P05783 430 aaKnown RBP19.24■□□□□ 0.67
SQSTM1-202ENST00000389805 ECHS1P30084 290 aa19.24■□□□□ 0.67
SQSTM1-202ENST00000389805 XRCC4Q13426 336 aa19.24■□□□□ 0.67
SQSTM1-202ENST00000389805 TMEM179Q6ZVK1 233 aa19.24■□□□□ 0.67
SQSTM1-202ENST00000389805 CCT6BQ92526 530 aa19.24■□□□□ 0.67
SQSTM1-202ENST00000389805 INPP4AQ96PE3 977 aaPredicted RBP19.24■□□□□ 0.67
SQSTM1-202ENST00000389805 LRRC27Q9C0I9 530 aa19.24■□□□□ 0.67
SQSTM1-202ENST00000389805 NT5C3AQ9H0P0 336 aa19.24■□□□□ 0.67
SQSTM1-202ENST00000389805 SPIRE1Q08AE8 756 aa19.24■□□□□ 0.67
SQSTM1-202ENST00000389805 KRT71Q3SY84 523 aa19.24■□□□□ 0.67
SQSTM1-202ENST00000389805 HYIQ5T013 277 aa19.24■□□□□ 0.67
SQSTM1-202ENST00000389805 TBC1D1Q86TI0 1168 aaPredicted RBP19.24■□□□□ 0.67
SQSTM1-202ENST00000389805 FBXO11Q86XK2 927 aa19.24■□□□□ 0.67
SQSTM1-202ENST00000389805 TBC1D5Q92609 795 aa19.24■□□□□ 0.67
SQSTM1-202ENST00000389805 TATDN2Q93075 761 aa19.24■□□□□ 0.67
SQSTM1-202ENST00000389805 DDX47Q9H0S4 455 aaKnown RBP19.24■□□□□ 0.67
SQSTM1-202ENST00000389805 COL4A3BPQ9Y5P4 624 aa19.24■□□□□ 0.67
SQSTM1-202ENST00000389805 MGRN1O60291 552 aa19.23■□□□□ 0.67
SQSTM1-202ENST00000389805 FGFR1OPO95684 399 aaKnown RBP19.23■□□□□ 0.67
SQSTM1-202ENST00000389805 TNNC1P63316 161 aa19.23■□□□□ 0.67
SQSTM1-202ENST00000389805 PDXDC1Q6P996 788 aa19.23■□□□□ 0.67
SQSTM1-202ENST00000389805 USP38Q8NB14 1042 aa19.23■□□□□ 0.67
SQSTM1-202ENST00000389805 ETNPPLQ8TBG4 499 aa19.23■□□□□ 0.67
SQSTM1-202ENST00000389805 LENG9Q96B70 501 aa19.23■□□□□ 0.67
SQSTM1-202ENST00000389805 CSRNP1Q96S65 589 aa19.23■□□□□ 0.67
SQSTM1-202ENST00000389805 GREB1LQ9C091 1923 aaPredicted RBP19.23■□□□□ 0.67
SQSTM1-202ENST00000389805 ARFGEF1Q9Y6D6 1849 aa19.23■□□□□ 0.67
SQSTM1-202ENST00000389805 TCP10L2B9ZVM9 353 aa19.23■□□□□ 0.67
SQSTM1-202ENST00000389805 PLSCR1O15162 318 aa19.23■□□□□ 0.67
SQSTM1-202ENST00000389805 CEP104O60308 925 aa19.23■□□□□ 0.67
SQSTM1-202ENST00000389805 KIAA0753Q2KHM9 967 aa19.23■□□□□ 0.67
SQSTM1-202ENST00000389805 ASTE1Q2TB18 679 aaPredicted RBP19.23■□□□□ 0.67
SQSTM1-202ENST00000389805 KIAA1755Q5JYT7 1200 aa19.23■□□□□ 0.67
SQSTM1-202ENST00000389805 HGSNATQ68CP4 663 aa19.23■□□□□ 0.67
SQSTM1-202ENST00000389805 CCDC84Q86UT8 332 aaPredicted RBP19.23■□□□□ 0.67
SQSTM1-202ENST00000389805 CRYGNQ8WXF5 182 aa19.23■□□□□ 0.67
SQSTM1-202ENST00000389805 RSRC1Q96IZ7 334 aaKnown RBP19.23■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms