RNA–Protein interactions for RNA: ENST00000384622.1

RNU6-540P-201, Transcript of RNA, U6 small nuclear 540, pseudogene, humanhuman

BASIC

Gene RNU6-540P, Length 101 nt, Biotype snRNA, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU6-540P-201ENST00000384622 MACF1Q9UPN3 7388 aaKnown RBP0.52□□□□□ -2.33
RNU6-540P-201ENST00000384622 TRBV23OR9-2A0A075B6M9 112 aa0.52□□□□□ -2.33
RNU6-540P-201ENST00000384622 CD8B2A6NJW9 211 aa0.52□□□□□ -2.33
RNU6-540P-201ENST00000384622 AHRRA9YTQ3 701 aa0.52□□□□□ -2.33
RNU6-540P-201ENST00000384622 RNASET2O00584 256 aaKnown RBP0.52□□□□□ -2.33
RNU6-540P-201ENST00000384622 RAD21O60216 631 aa0.52□□□□□ -2.33
RNU6-540P-201ENST00000384622 NCR1O76036 304 aa0.52□□□□□ -2.33
RNU6-540P-201ENST00000384622 BPNT1O95861 308 aa0.52□□□□□ -2.33
RNU6-540P-201ENST00000384622 TBX6O95947 436 aaPredicted RBP0.52□□□□□ -2.33
RNU6-540P-201ENST00000384622 EGR2P11161 476 aaPredicted RBP0.52□□□□□ -2.33
RNU6-540P-201ENST00000384622 ITGAMP11215 1152 aa0.52□□□□□ -2.33
RNU6-540P-201ENST00000384622 WT1P19544 449 aaPredicted RBP0.52□□□□□ -2.33
RNU6-540P-201ENST00000384622 GPD1P21695 349 aa0.52□□□□□ -2.33
RNU6-540P-201ENST00000384622 EPHB2P29323 1055 aa0.52□□□□□ -2.33
RNU6-540P-201ENST00000384622 POLR2BP30876 1174 aaKnown RBP0.52□□□□□ -2.33
RNU6-540P-201ENST00000384622 PFKPQ01813 784 aa0.52□□□□□ -2.33
RNU6-540P-201ENST00000384622 ADAM15Q13444 863 aa0.52□□□□□ -2.33
RNU6-540P-201ENST00000384622 ELOAQ14241 798 aaKnown RBP0.52□□□□□ -2.33
RNU6-540P-201ENST00000384622 LARP7Q4G0J3 582 aaKnown RBP eCLIP0.52□□□□□ -2.33
RNU6-540P-201ENST00000384622 DPP8Q6V1X1 898 aaPredicted RBP0.52□□□□□ -2.33
RNU6-540P-201ENST00000384622 REPS2Q8NFH8 660 aa0.52□□□□□ -2.33
RNU6-540P-201ENST00000384622 DPF3Q92784 378 aa0.52□□□□□ -2.33
RNU6-540P-201ENST00000384622 BRF1Q92994 677 aa0.52□□□□□ -2.33
RNU6-540P-201ENST00000384622 SLITRK1Q96PX8 696 aa0.52□□□□□ -2.33
RNU6-540P-201ENST00000384622 HEPHQ9BQS7 1158 aa0.52□□□□□ -2.33
RNU6-540P-201ENST00000384622 HERPUD2Q9BSE4 406 aa0.52□□□□□ -2.33
RNU6-540P-201ENST00000384622 KCNH6Q9H252 994 aa0.52□□□□□ -2.33
RNU6-540P-201ENST00000384622 LRIT1Q9P2V4 623 aa0.52□□□□□ -2.33
RNU6-540P-201ENST00000384622 DRGXA6NNA5 263 aa0.51□□□□□ -2.33
RNU6-540P-201ENST00000384622 SOCS2O14508 198 aa0.51□□□□□ -2.33
RNU6-540P-201ENST00000384622 IPO13O94829 963 aaKnown RBP0.51□□□□□ -2.33
RNU6-540P-201ENST00000384622 BMPR1AP36894 532 aa0.51□□□□□ -2.33
RNU6-540P-201ENST00000384622 STAT3P40763 770 aa0.51□□□□□ -2.33
RNU6-540P-201ENST00000384622 HNRNPA3P51991 378 aaKnown RBP0.51□□□□□ -2.33
RNU6-540P-201ENST00000384622 TP53BP2Q13625 1128 aa0.51□□□□□ -2.33
RNU6-540P-201ENST00000384622 MLECQ14165 292 aa0.51□□□□□ -2.33
RNU6-540P-201ENST00000384622 DDB1Q16531 1140 aa0.51□□□□□ -2.33
RNU6-540P-201ENST00000384622 CEP85LQ5SZL2 805 aa0.51□□□□□ -2.33
RNU6-540P-201ENST00000384622 STEAP3Q658P3 488 aa0.51□□□□□ -2.33
RNU6-540P-201ENST00000384622 FCRLBQ6BAA4 426 aa0.51□□□□□ -2.33
RNU6-540P-201ENST00000384622 C9orf47Q6ZRZ4 202 aa0.51□□□□□ -2.33
RNU6-540P-201ENST00000384622 TMEM192Q8IY95 271 aa0.51□□□□□ -2.33
RNU6-540P-201ENST00000384622 C7orf61Q8IZ16 206 aa0.51□□□□□ -2.33
RNU6-540P-201ENST00000384622 RTKN2Q8IZC4 609 aa0.51□□□□□ -2.33
RNU6-540P-201ENST00000384622 SPAG16Q8N0X2 631 aa0.51□□□□□ -2.33
RNU6-540P-201ENST00000384622 FBXO41Q8TF61 875 aa0.51□□□□□ -2.33
RNU6-540P-201ENST00000384622 ASB10Q8WXI3 467 aa0.51□□□□□ -2.33
RNU6-540P-201ENST00000384622 SRCIN1Q9C0H9 1055 aa0.51□□□□□ -2.33
RNU6-540P-201ENST00000384622 EGLN1Q9GZT9 426 aa0.51□□□□□ -2.33
RNU6-540P-201ENST00000384622 CPNE5Q9HCH3 593 aa0.51□□□□□ -2.33
RNU6-540P-201ENST00000384622 RNF181Q9P0P0 153 aa0.51□□□□□ -2.33
RNU6-540P-201ENST00000384622 DKK2Q9UBU2 259 aa0.51□□□□□ -2.33
RNU6-540P-201ENST00000384622 AFG3L2Q9Y4W6 797 aa0.51□□□□□ -2.33
RNU6-540P-201ENST00000384622 AOX1Q06278 1338 aa0.5□□□□□ -2.33
RNU6-540P-201ENST00000384622 SUPT5HO00267 1087 aaKnown RBP0.5□□□□□ -2.33
RNU6-540P-201ENST00000384622 MYO1BO43795 1136 aa0.5□□□□□ -2.33
RNU6-540P-201ENST00000384622 DDNO94850 711 aaPredicted RBP0.5□□□□□ -2.33
RNU6-540P-201ENST00000384622 HK1P19367 917 aa0.5□□□□□ -2.33
RNU6-540P-201ENST00000384622 FPR2P25090 351 aa0.5□□□□□ -2.33
RNU6-540P-201ENST00000384622 CDKN2AP42771 156 aaKnown RBP0.5□□□□□ -2.33
RNU6-540P-201ENST00000384622 ZNF445P59923 1031 aa0.5□□□□□ -2.33
RNU6-540P-201ENST00000384622 FKBP4Q02790 459 aaKnown RBP eCLIP0.5□□□□□ -2.33
RNU6-540P-201ENST00000384622 SF3B2Q13435 895 aaKnown RBP0.5□□□□□ -2.33
RNU6-540P-201ENST00000384622 ASIC2Q16515 512 aa0.5□□□□□ -2.33
RNU6-540P-201ENST00000384622 WDR72Q3MJ13 1102 aa0.5□□□□□ -2.33
RNU6-540P-201ENST00000384622 ZIK1Q3SY52 487 aaPredicted RBP0.5□□□□□ -2.33
RNU6-540P-201ENST00000384622 MFSD5Q6N075 450 aa0.5□□□□□ -2.33
RNU6-540P-201ENST00000384622 SLC2A7Q6PXP3 512 aa0.5□□□□□ -2.33
RNU6-540P-201ENST00000384622 AGMOQ6ZNB7 445 aa0.5□□□□□ -2.33
RNU6-540P-201ENST00000384622 MYPOPQ86VE0 399 aaPredicted RBP0.5□□□□□ -2.33
RNU6-540P-201ENST00000384622 CPEB3Q8NE35 698 aaKnown RBP0.5□□□□□ -2.33
RNU6-540P-201ENST00000384622 MDGA1Q8NFP4 955 aa0.5□□□□□ -2.33
RNU6-540P-201ENST00000384622 ANKRD9Q96BM1 317 aaPredicted RBP0.5□□□□□ -2.33
RNU6-540P-201ENST00000384622 SARAFQ96BY9 339 aa0.5□□□□□ -2.33
RNU6-540P-201ENST00000384622 PDLIM2Q96JY6 352 aa0.5□□□□□ -2.33
RNU6-540P-201ENST00000384622 TRPM5Q9NZQ8 1165 aa0.5□□□□□ -2.33
RNU6-540P-201ENST00000384622 DNMT3BQ9UBC3 853 aaKnown RBP0.5□□□□□ -2.33
RNU6-540P-201ENST00000384622 MCM8Q9UJA3 840 aa0.5□□□□□ -2.33
RNU6-540P-201ENST00000384622 CDC42EP3Q9UKI2 254 aa0.5□□□□□ -2.33
RNU6-540P-201ENST00000384622 AHNAK2Q8IVF2 5795 aa0.5□□□□□ -2.33
RNU6-540P-201ENST00000384622 GAGE12BA1L429 117 aa0.49□□□□□ -2.33
RNU6-540P-201ENST00000384622 GAGE12HA6NDE8 117 aa0.49□□□□□ -2.33
RNU6-540P-201ENST00000384622 C2orf71A6NGG8 1288 aa0.49□□□□□ -2.33
RNU6-540P-201ENST00000384622 LINC01548A6NM66 108 aa0.49□□□□□ -2.33
RNU6-540P-201ENST00000384622 STXBP3O00186 592 aa0.49□□□□□ -2.33
RNU6-540P-201ENST00000384622 AURKAO14965 403 aa0.49□□□□□ -2.33
RNU6-540P-201ENST00000384622 SHOXO15266 292 aa0.49□□□□□ -2.33
RNU6-540P-201ENST00000384622 MPGP29372 298 aa0.49□□□□□ -2.33
RNU6-540P-201ENST00000384622 MRPS35P82673 323 aaKnown RBP0.49□□□□□ -2.33
RNU6-540P-201ENST00000384622 MST1LQ2TV78 715 aa0.49□□□□□ -2.33
RNU6-540P-201ENST00000384622 BEAN1Q3B7T3 259 aa0.49□□□□□ -2.33
RNU6-540P-201ENST00000384622 TRIM68Q6AZZ1 485 aa0.49□□□□□ -2.33
RNU6-540P-201ENST00000384622 IQSEC1Q6DN90 963 aa0.49□□□□□ -2.33
RNU6-540P-201ENST00000384622 SLC18B1Q6NT16 456 aa0.49□□□□□ -2.33
RNU6-540P-201ENST00000384622 ZNF782Q6ZMW2 699 aaPredicted RBP0.49□□□□□ -2.33
RNU6-540P-201ENST00000384622 Q6ZNX1 250 aa0.49□□□□□ -2.33
RNU6-540P-201ENST00000384622 CEP68Q76N32 757 aa0.49□□□□□ -2.33
RNU6-540P-201ENST00000384622 TMC1Q8TDI8 760 aa0.49□□□□□ -2.33
RNU6-540P-201ENST00000384622 TRMT2BQ96GJ1 504 aaKnown RBP0.49□□□□□ -2.33
RNU6-540P-201ENST00000384622 FAM84BQ96KN1 310 aaPredicted RBP0.49□□□□□ -2.33
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms