RNA–Protein interactions for RNA: ENST00000377011.6

VRK3-202, Transcript of vaccinia related kinase 3, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene VRK3, Length 1,749 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-202ENST00000377011 HOXC8P31273 242 aa13.79□□□□□ -0.2
VRK3-202ENST00000377011 CIITAP33076 1130 aa13.79□□□□□ -0.2
VRK3-202ENST00000377011 TMEM240Q5SV17 173 aa13.79□□□□□ -0.2
VRK3-202ENST00000377011 E4F1Q66K89 784 aaPredicted RBP13.79□□□□□ -0.2
VRK3-202ENST00000377011 C7orf31Q8N865 590 aa13.79□□□□□ -0.2
VRK3-202ENST00000377011 MLKLQ8NB16 471 aa13.79□□□□□ -0.2
VRK3-202ENST00000377011 GLT8D2Q9H1C3 349 aa13.79□□□□□ -0.2
VRK3-202ENST00000377011 EHMT1Q9H9B1 1298 aa13.79□□□□□ -0.2
VRK3-202ENST00000377011 SLC9A2Q9UBY0 812 aa13.79□□□□□ -0.2
VRK3-202ENST00000377011 REV3LO60673 3130 aa13.79□□□□□ -0.2
VRK3-202ENST00000377011 GRXCR1A8MXD5 290 aa13.78□□□□□ -0.2
VRK3-202ENST00000377011 SLU7O95391 586 aaKnown RBP13.78□□□□□ -0.2
VRK3-202ENST00000377011 BMP15O95972 392 aa13.78□□□□□ -0.2
VRK3-202ENST00000377011 ATP4AP20648 1035 aa13.78□□□□□ -0.2
VRK3-202ENST00000377011 CBX1P83916 185 aa13.78□□□□□ -0.2
VRK3-202ENST00000377011 MBTPS1Q14703 1052 aa13.78□□□□□ -0.2
VRK3-202ENST00000377011 ZNF365Q70YC5 407 aa13.78□□□□□ -0.2
VRK3-202ENST00000377011 VSTM4Q8IW00 320 aa13.78□□□□□ -0.2
VRK3-202ENST00000377011 DIS3L2Q8IYB7 885 aaKnown RBP13.78□□□□□ -0.2
VRK3-202ENST00000377011 SEPT1Q8WYJ6 367 aa13.78□□□□□ -0.2
VRK3-202ENST00000377011 PPP1R13BQ96KQ4 1090 aa13.78□□□□□ -0.2
VRK3-202ENST00000377011 TMX1Q9H3N1 280 aa13.78□□□□□ -0.2
VRK3-202ENST00000377011 FBXO2Q9UK22 296 aaPredicted RBP13.78□□□□□ -0.2
VRK3-202ENST00000377011 BTBD18B2RXH4 712 aa13.78□□□□□ -0.2
VRK3-202ENST00000377011 IPO5O00410 1097 aaKnown RBP13.78□□□□□ -0.2
VRK3-202ENST00000377011 XBP1P17861 261 aa13.78□□□□□ -0.2
VRK3-202ENST00000377011 UBASH3AP57075 661 aa13.78□□□□□ -0.2
VRK3-202ENST00000377011 ADAM17P78536 824 aa13.78□□□□□ -0.2
VRK3-202ENST00000377011 RUFY4Q6ZNE9 571 aa13.78□□□□□ -0.2
VRK3-202ENST00000377011 PIK3AP1Q6ZUJ8 805 aa13.78□□□□□ -0.2
VRK3-202ENST00000377011 Q7L0L9 218 aa13.78□□□□□ -0.2
VRK3-202ENST00000377011 NIPA1Q7RTP0 329 aa13.78□□□□□ -0.2
VRK3-202ENST00000377011 DEFB128Q7Z7B8 93 aa13.78□□□□□ -0.2
VRK3-202ENST00000377011 CCDC60Q8IWA6 550 aaPredicted RBP13.78□□□□□ -0.2
VRK3-202ENST00000377011 ZNF397Q8NF99 534 aaPredicted RBP13.78□□□□□ -0.2
VRK3-202ENST00000377011 LMBR1Q8WVP7 490 aa13.78□□□□□ -0.2
VRK3-202ENST00000377011 TRAPPC12Q8WVT3 735 aa13.78□□□□□ -0.2
VRK3-202ENST00000377011 CDHR1Q96JP9 859 aa13.78□□□□□ -0.2
VRK3-202ENST00000377011 ZNF577Q9BSK1 485 aa13.78□□□□□ -0.2
VRK3-202ENST00000377011 SRPRBQ9Y5M8 271 aaKnown RBP13.78□□□□□ -0.2
VRK3-202ENST00000377011 SIP14410 1827 aa13.78□□□□□ -0.2
VRK3-202ENST00000377011 NFASCO94856 1347 aa13.78□□□□□ -0.2
VRK3-202ENST00000377011 PHLPP2Q6ZVD8 1323 aa13.78□□□□□ -0.2
VRK3-202ENST00000377011 KAT6AQ92794 2004 aa13.77□□□□□ -0.21
VRK3-202ENST00000377011 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.77□□□□□ -0.21
VRK3-202ENST00000377011 GOLGA6L9A6NEM1 432 aa13.77□□□□□ -0.21
VRK3-202ENST00000377011 MAFGO15525 162 aa13.77□□□□□ -0.21
VRK3-202ENST00000377011 LGR5O75473 907 aa13.77□□□□□ -0.21
VRK3-202ENST00000377011 ATG7O95352 703 aa13.77□□□□□ -0.21
VRK3-202ENST00000377011 SERPINC1P01008 464 aa13.77□□□□□ -0.21
VRK3-202ENST00000377011 IQCF3P0C7M6 154 aa13.77□□□□□ -0.21
VRK3-202ENST00000377011 SARSP49591 514 aaKnown RBP13.77□□□□□ -0.21
VRK3-202ENST00000377011 PTPN11Q06124 597 aaPredicted RBP13.77□□□□□ -0.21
VRK3-202ENST00000377011 PNOCQ13519 176 aa13.77□□□□□ -0.21
VRK3-202ENST00000377011 LONRF3Q496Y0 759 aa13.77□□□□□ -0.21
VRK3-202ENST00000377011 MARCH8Q5T0T0 291 aa13.77□□□□□ -0.21
VRK3-202ENST00000377011 ABHD15Q6UXT9 468 aa13.77□□□□□ -0.21
VRK3-202ENST00000377011 ZNF592Q92610 1267 aa13.77□□□□□ -0.21
VRK3-202ENST00000377011 PTPRSQ13332 1948 aa13.77□□□□□ -0.21
VRK3-202ENST00000377011 IGKV6D-21A0A0A0MT36 114 aa13.76□□□□□ -0.21
VRK3-202ENST00000377011 NBNO60934 754 aa13.76□□□□□ -0.21
VRK3-202ENST00000377011 CKBP12277 381 aa13.76□□□□□ -0.21
VRK3-202ENST00000377011 TOB1P50616 345 aaPredicted RBP13.76□□□□□ -0.21
VRK3-202ENST00000377011 POSTNQ15063 836 aa13.76□□□□□ -0.21
VRK3-202ENST00000377011 LRIT3Q3SXY7 679 aa13.76□□□□□ -0.21
VRK3-202ENST00000377011 ZNF618Q5T7W0 954 aa13.76□□□□□ -0.21
VRK3-202ENST00000377011 OTOP2Q7RTS6 562 aa13.76□□□□□ -0.21
VRK3-202ENST00000377011 TRMT1LQ7Z2T5 733 aaKnown RBP13.76□□□□□ -0.21
VRK3-202ENST00000377011 TEX2Q8IWB9 1127 aa13.76□□□□□ -0.21
VRK3-202ENST00000377011 ENOX1Q8TC92 643 aaKnown RBP13.76□□□□□ -0.21
VRK3-202ENST00000377011 MBOAT7Q96N66 472 aa13.76□□□□□ -0.21
VRK3-202ENST00000377011 KATNAL1Q9BW62 490 aa13.76□□□□□ -0.21
VRK3-202ENST00000377011 IL23AQ9NPF7 189 aa13.76□□□□□ -0.21
VRK3-202ENST00000377011 NOD1Q9Y239 953 aa13.76□□□□□ -0.21
VRK3-202ENST00000377011 PCDHA5Q9Y5H7 936 aa13.76□□□□□ -0.21
VRK3-202ENST00000377011 GBF1Q92538 1859 aa13.76□□□□□ -0.21
VRK3-202ENST00000377011 A0A1W2PPC1 479 aa13.76□□□□□ -0.21
VRK3-202ENST00000377011 C17orf102A2RUQ5 167 aa13.76□□□□□ -0.21
VRK3-202ENST00000377011 SUPT20HL2P0C7V6 817 aa13.76□□□□□ -0.21
VRK3-202ENST00000377011 ERCC5P28715 1186 aaPredicted RBP13.76□□□□□ -0.21
VRK3-202ENST00000377011 FAM193AP78312 1265 aa13.76□□□□□ -0.21
VRK3-202ENST00000377011 GABPB1Q06547 395 aaPredicted RBP13.76□□□□□ -0.21
VRK3-202ENST00000377011 PLCB4Q15147 1175 aa13.76□□□□□ -0.21
VRK3-202ENST00000377011 UGCGQ16739 394 aa13.76□□□□□ -0.21
VRK3-202ENST00000377011 LETM2Q2VYF4 491 aa13.76□□□□□ -0.21
VRK3-202ENST00000377011 RASIP1Q5U651 963 aa13.76□□□□□ -0.21
VRK3-202ENST00000377011 SERINC5Q86VE9 423 aa13.76□□□□□ -0.21
VRK3-202ENST00000377011 TMEM199Q8N511 208 aa13.76□□□□□ -0.21
VRK3-202ENST00000377011 GIMAP8Q8ND71 665 aaPredicted RBP13.76□□□□□ -0.21
VRK3-202ENST00000377011 SPATA20Q8TB22 786 aa13.76□□□□□ -0.21
VRK3-202ENST00000377011 ETNPPLQ8TBG4 499 aa13.76□□□□□ -0.21
VRK3-202ENST00000377011 GLG1Q92896 1179 aa13.76□□□□□ -0.21
VRK3-202ENST00000377011 ATP6V0A1Q93050 837 aa13.76□□□□□ -0.21
VRK3-202ENST00000377011 CLIC6Q96NY7 704 aa13.76□□□□□ -0.21
VRK3-202ENST00000377011 ARID3AQ99856 593 aa13.76□□□□□ -0.21
VRK3-202ENST00000377011 SRRTQ9BXP5 876 aaKnown RBP13.76□□□□□ -0.21
VRK3-202ENST00000377011 UNC45AQ9H3U1 944 aa13.76□□□□□ -0.21
VRK3-202ENST00000377011 TRMT1Q9NXH9 659 aaKnown RBP13.76□□□□□ -0.21
VRK3-202ENST00000377011 CYP3A7-CYP3A51PA0A087WV96 503 aa13.75□□□□□ -0.21
VRK3-202ENST00000377011 ARHGAP6O43182 974 aa13.75□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms