RNA–Protein interactions for RNA: ENST00000357857.14

CLN3-204, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,720 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-204ENST00000357857 FIZ1Q96SL8 496 aa20.64■□□□□ 0.89
CLN3-204ENST00000357857 NKRFO15226 690 aaKnown RBP eCLIP20.63■□□□□ 0.89
CLN3-204ENST00000357857 EIF3DO15371 548 aaKnown RBP eCLIP20.63■□□□□ 0.89
CLN3-204ENST00000357857 PRPF6O94906 941 aaKnown RBP20.63■□□□□ 0.89
CLN3-204ENST00000357857 PLS3P13797 630 aa20.63■□□□□ 0.89
CLN3-204ENST00000357857 SMPD1P17405 629 aa20.63■□□□□ 0.89
CLN3-204ENST00000357857 NMT1P30419 496 aaKnown RBP20.63■□□□□ 0.89
CLN3-204ENST00000357857 CCDC144BQ3MJ40 725 aa20.63■□□□□ 0.89
CLN3-204ENST00000357857 STXBP4Q6ZWJ1 553 aa20.63■□□□□ 0.89
CLN3-204ENST00000357857 MCPH1Q8NEM0 835 aa20.63■□□□□ 0.89
CLN3-204ENST00000357857 ZNF507Q8TCN5 953 aa20.63■□□□□ 0.89
CLN3-204ENST00000357857 ATP6V0A4Q9HBG4 840 aa20.63■□□□□ 0.89
CLN3-204ENST00000357857 KCNJ18B7U540 433 aa20.62■□□□□ 0.89
CLN3-204ENST00000357857 TBC1D8O95759 1140 aa20.62■□□□□ 0.89
CLN3-204ENST00000357857 PTMAP06454 111 aaKnown RBP20.62■□□□□ 0.89
CLN3-204ENST00000357857 MAPTP10636 758 aaKnown RBP20.62■□□□□ 0.89
CLN3-204ENST00000357857 KCNJ12Q14500 433 aa20.62■□□□□ 0.89
CLN3-204ENST00000357857 ZCWPW2Q504Y3 356 aa20.62■□□□□ 0.89
CLN3-204ENST00000357857 ZNF720Q7Z2F6 126 aa20.62■□□□□ 0.89
CLN3-204ENST00000357857 SPC24Q8NBT2 197 aa20.62■□□□□ 0.89
CLN3-204ENST00000357857 ANKRD20A12PQ8NF67 263 aa20.62■□□□□ 0.89
CLN3-204ENST00000357857 PPTC7Q8NI37 304 aa20.62■□□□□ 0.89
CLN3-204ENST00000357857 NAP1L5Q96NT1 182 aaPredicted RBP20.62■□□□□ 0.89
CLN3-204ENST00000357857 ARHGAP39Q9C0H5 1083 aa20.62■□□□□ 0.89
CLN3-204ENST00000357857 KCTD10Q9H3F6 313 aa20.62■□□□□ 0.89
CLN3-204ENST00000357857 SMARCAD1Q9H4L7 1026 aa20.62■□□□□ 0.89
CLN3-204ENST00000357857 GPRC5CQ9NQ84 441 aa20.62■□□□□ 0.89
CLN3-204ENST00000357857 PDLIM7Q9NR12 457 aa20.62■□□□□ 0.89
CLN3-204ENST00000357857 UBE4BO95155 1302 aa20.62■□□□□ 0.89
CLN3-204ENST00000357857 FGFR1OPO95684 399 aaKnown RBP20.61■□□□□ 0.89
CLN3-204ENST00000357857 CYP2C19P33261 490 aa20.61■□□□□ 0.89
CLN3-204ENST00000357857 MAP2K2P36507 400 aa20.61■□□□□ 0.89
CLN3-204ENST00000357857 SLC26A2P50443 739 aa20.61■□□□□ 0.89
CLN3-204ENST00000357857 KNOP1Q1ED39 458 aaKnown RBP20.61■□□□□ 0.89
CLN3-204ENST00000357857 TCP11X2Q5H9J9 407 aa20.61■□□□□ 0.89
CLN3-204ENST00000357857 PRAMEF19Q5SWL8 479 aa20.61■□□□□ 0.89
CLN3-204ENST00000357857 TRIM50Q86XT4 487 aa20.61■□□□□ 0.89
CLN3-204ENST00000357857 IRF2BP1Q8IU81 584 aa20.61■□□□□ 0.89
CLN3-204ENST00000357857 FAM114A1Q8IWE2 563 aa20.61■□□□□ 0.89
CLN3-204ENST00000357857 BBXQ8WY36 941 aaPredicted RBP20.61■□□□□ 0.89
CLN3-204ENST00000357857 KIFAP3Q92845 792 aa20.61■□□□□ 0.89
CLN3-204ENST00000357857 CTAGE1Q96RT6 745 aa20.61■□□□□ 0.89
CLN3-204ENST00000357857 MAGEC2Q9UBF1 373 aaPredicted RBP20.61■□□□□ 0.89
CLN3-204ENST00000357857 LIMA1Q9UHB6 759 aaKnown RBP20.61■□□□□ 0.89
CLN3-204ENST00000357857 CASP8AP2Q9UKL3 1982 aa20.61■□□□□ 0.89
CLN3-204ENST00000357857 TPM3P06753 285 aa20.61■□□□□ 0.89
CLN3-204ENST00000357857 MARK3P27448 753 aa20.61■□□□□ 0.89
CLN3-204ENST00000357857 POLGP54098 1239 aaPredicted RBP20.61■□□□□ 0.89
CLN3-204ENST00000357857 TNFAIP2Q03169 654 aa20.61■□□□□ 0.89
CLN3-204ENST00000357857 PPP4R3CPQ6ZMV5 832 aa20.61■□□□□ 0.89
CLN3-204ENST00000357857 APTXQ7Z2E3 356 aaKnown RBP20.61■□□□□ 0.89
CLN3-204ENST00000357857 OR6J1Q8NGC5 347 aa20.61■□□□□ 0.89
CLN3-204ENST00000357857 ATP8B4Q8TF62 1192 aa20.61■□□□□ 0.89
CLN3-204ENST00000357857 AFG1LQ8WV93 481 aa20.61■□□□□ 0.89
CLN3-204ENST00000357857 TRIM44Q96DX7 344 aaPredicted RBP20.61■□□□□ 0.89
CLN3-204ENST00000357857 CFHR5Q9BXR6 569 aa20.61■□□□□ 0.89
CLN3-204ENST00000357857 XPNPEP1Q9NQW7 623 aa20.61■□□□□ 0.89
CLN3-204ENST00000357857 PPME1Q9Y570 386 aa20.61■□□□□ 0.89
CLN3-204ENST00000357857 PCDHB13Q9Y5F0 798 aa20.61■□□□□ 0.89
CLN3-204ENST00000357857 K7ENM7 598 aa20.6■□□□□ 0.89
CLN3-204ENST00000357857 IGHA2P01877 340 aa20.6■□□□□ 0.89
CLN3-204ENST00000357857 ZNF865P0CJ78 1059 aaPredicted RBP20.6■□□□□ 0.89
CLN3-204ENST00000357857 EEF1GP26641 437 aaKnown RBP20.6■□□□□ 0.89
CLN3-204ENST00000357857 HOXD13P35453 343 aa20.6■□□□□ 0.89
CLN3-204ENST00000357857 VEGFBP49765 207 aa20.6■□□□□ 0.89
CLN3-204ENST00000357857 SP3Q02447 781 aa20.6■□□□□ 0.89
CLN3-204ENST00000357857 EMC2Q15006 297 aa20.6■□□□□ 0.89
CLN3-204ENST00000357857 KRT31Q15323 416 aa20.6■□□□□ 0.89
CLN3-204ENST00000357857 TARBP2Q15633 366 aaKnown RBP20.6■□□□□ 0.89
CLN3-204ENST00000357857 DHX33Q9H6R0 707 aaKnown RBP20.6■□□□□ 0.89
CLN3-204ENST00000357857 A0A1B0GTH6 734 aa20.59■□□□□ 0.89
CLN3-204ENST00000357857 GOLGA6L6A8MZA4 724 aa20.59■□□□□ 0.89
CLN3-204ENST00000357857 XRCC5P13010 732 aaKnown RBP20.59■□□□□ 0.89
CLN3-204ENST00000357857 RFC5P40937 340 aa20.59■□□□□ 0.89
CLN3-204ENST00000357857 PEX3P56589 373 aa20.59■□□□□ 0.89
CLN3-204ENST00000357857 ALCAMQ13740 583 aa20.59■□□□□ 0.89
CLN3-204ENST00000357857 KIF22Q14807 665 aa20.59■□□□□ 0.89
CLN3-204ENST00000357857 PLCB4Q15147 1175 aa20.59■□□□□ 0.89
CLN3-204ENST00000357857 ZC2HC1CQ53FD0 456 aaPredicted RBP20.59■□□□□ 0.89
CLN3-204ENST00000357857 CREBRFQ8IUR6 639 aa20.59■□□□□ 0.89
CLN3-204ENST00000357857 SLC17A8Q8NDX2 589 aa20.59■□□□□ 0.89
CLN3-204ENST00000357857 CEP89Q96ST8 783 aa20.59■□□□□ 0.89
CLN3-204ENST00000357857 C17orf75Q9HAS0 396 aa20.59■□□□□ 0.89
CLN3-204ENST00000357857 RNF186Q9NXI6 227 aa20.59■□□□□ 0.89
CLN3-204ENST00000357857 PDXKO00764 312 aa20.58■□□□□ 0.89
CLN3-204ENST00000357857 ADCY6O43306 1168 aa20.58■□□□□ 0.89
CLN3-204ENST00000357857 PPP1R37O75864 691 aa20.58■□□□□ 0.89
CLN3-204ENST00000357857 LGALS2P05162 132 aa20.58■□□□□ 0.89
CLN3-204ENST00000357857 HSPA6P17066 643 aa20.58■□□□□ 0.89
CLN3-204ENST00000357857 FKBP3Q00688 224 aaKnown RBP20.58■□□□□ 0.89
CLN3-204ENST00000357857 DMP1Q13316 513 aaPredicted RBP20.58■□□□□ 0.89
CLN3-204ENST00000357857 EDRF1Q3B7T1 1238 aa20.58■□□□□ 0.89
CLN3-204ENST00000357857 FILIP1LQ4L180 1135 aa20.58■□□□□ 0.89
CLN3-204ENST00000357857 LRRC55Q6ZSA7 311 aa20.58■□□□□ 0.89
CLN3-204ENST00000357857 SLC7A3Q8WY07 619 aa20.58■□□□□ 0.89
CLN3-204ENST00000357857 EEF2KMTQ96G04 330 aa20.58■□□□□ 0.89
CLN3-204ENST00000357857 CNOT6LQ96LI5 555 aaKnown RBP20.58■□□□□ 0.89
CLN3-204ENST00000357857 STRA6Q9BX79 667 aa20.58■□□□□ 0.89
CLN3-204ENST00000357857 TYW1Q9NV66 732 aaKnown RBP20.58■□□□□ 0.89
CLN3-204ENST00000357857 INTS13Q9NVM9 706 aa20.58■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms