RNA–Protein interactions for RNA: ENST00000347401.7

COL6A3-202, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,625 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-202ENST00000347401 ACSL3O95573 720 aa14.19□□□□□ -0.14
COL6A3-202ENST00000347401 NRBP2Q9NSY0 501 aa14.19□□□□□ -0.14
COL6A3-202ENST00000347401 SAMD9Q5K651 1589 aa14.19□□□□□ -0.14
COL6A3-202ENST00000347401 SAMD9LQ8IVG5 1584 aa14.19□□□□□ -0.14
COL6A3-202ENST00000347401 LDHAP00338 332 aaKnown RBP14.19□□□□□ -0.14
COL6A3-202ENST00000347401 RUNX1T1Q06455 604 aa14.19□□□□□ -0.14
COL6A3-202ENST00000347401 SOWAHDA6NJG2 315 aa14.19□□□□□ -0.14
COL6A3-202ENST00000347401 SPDYE16A6NNV3 312 aaPredicted RBP14.19□□□□□ -0.14
COL6A3-202ENST00000347401 CDH16O75309 829 aa14.19□□□□□ -0.14
COL6A3-202ENST00000347401 CCDC15Q0P6D6 951 aa14.19□□□□□ -0.14
COL6A3-202ENST00000347401 SPDYE2Q495Y8 402 aa14.19□□□□□ -0.14
COL6A3-202ENST00000347401 TADA1Q96BN2 335 aa14.19□□□□□ -0.14
COL6A3-202ENST00000347401 DBNDD2Q9BQY9 259 aa14.19□□□□□ -0.14
COL6A3-202ENST00000347401 LRRIQ1Q96JM4 1722 aa14.19□□□□□ -0.14
COL6A3-202ENST00000347401 DLATP10515 647 aaKnown RBP14.19□□□□□ -0.14
COL6A3-202ENST00000347401 CDC27P30260 824 aa14.19□□□□□ -0.14
COL6A3-202ENST00000347401 EIF4A3P38919 411 aaKnown RBP14.19□□□□□ -0.14
COL6A3-202ENST00000347401 NUP107P57740 925 aa14.19□□□□□ -0.14
COL6A3-202ENST00000347401 TFDP2Q14188 446 aa14.19□□□□□ -0.14
COL6A3-202ENST00000347401 NAALADL2Q58DX5 795 aa14.19□□□□□ -0.14
COL6A3-202ENST00000347401 ZBTB41Q5SVQ8 909 aa14.19□□□□□ -0.14
COL6A3-202ENST00000347401 IFNL3Q8IZI9 196 aa14.19□□□□□ -0.14
COL6A3-202ENST00000347401 LSG1Q9H089 658 aaKnown RBP14.19□□□□□ -0.14
COL6A3-202ENST00000347401 SLC38A10Q9HBR0 1119 aa14.19□□□□□ -0.14
COL6A3-202ENST00000347401 SMARCAL1Q9NZC9 954 aa14.19□□□□□ -0.14
COL6A3-202ENST00000347401 SEL1LQ9UBV2 794 aa14.19□□□□□ -0.14
COL6A3-202ENST00000347401 CEP152O94986 1710 aa14.19□□□□□ -0.14
COL6A3-202ENST00000347401 PARVBQ9HBI1 364 aa14.19□□□□□ -0.14
COL6A3-202ENST00000347401 SLC39A2Q9NP94 309 aa14.19□□□□□ -0.14
COL6A3-202ENST00000347401 DDX28Q9NUL7 540 aaKnown RBP14.19□□□□□ -0.14
COL6A3-202ENST00000347401 SLC8A2Q9UPR5 921 aa14.19□□□□□ -0.14
COL6A3-202ENST00000347401 WDR64B1ANS9 1081 aa14.19□□□□□ -0.14
COL6A3-202ENST00000347401 GOLGA8RI6L899 631 aa14.19□□□□□ -0.14
COL6A3-202ENST00000347401 KLHL2O95198 593 aa14.19□□□□□ -0.14
COL6A3-202ENST00000347401 ALDH1B1P30837 517 aa14.19□□□□□ -0.14
COL6A3-202ENST00000347401 ITKQ08881 620 aa14.19□□□□□ -0.14
COL6A3-202ENST00000347401 PGBD1Q96JS3 809 aa14.19□□□□□ -0.14
COL6A3-202ENST00000347401 ADGRA3Q8IWK6 1321 aa14.19□□□□□ -0.14
COL6A3-202ENST00000347401 SLC7A3Q8WY07 619 aa14.19□□□□□ -0.14
COL6A3-202ENST00000347401 AMNQ9BXJ7 453 aa14.19□□□□□ -0.14
COL6A3-202ENST00000347401 OLFML3Q9NRN5 406 aa14.19□□□□□ -0.14
COL6A3-202ENST00000347401 TBK1Q9UHD2 729 aa14.19□□□□□ -0.14
COL6A3-202ENST00000347401 PARP3Q9Y6F1 533 aa14.19□□□□□ -0.14
COL6A3-202ENST00000347401 DCAF15Q66K64 600 aa14.18□□□□□ -0.14
COL6A3-202ENST00000347401 MMS19Q96T76 1030 aa14.18□□□□□ -0.14
COL6A3-202ENST00000347401 TRPM1Q7Z4N2 1603 aa14.18□□□□□ -0.14
COL6A3-202ENST00000347401 DDB1Q16531 1140 aa14.18□□□□□ -0.14
COL6A3-202ENST00000347401 NGLY1Q96IV0 654 aa14.18□□□□□ -0.14
COL6A3-202ENST00000347401 EPAS1Q99814 870 aa14.18□□□□□ -0.14
COL6A3-202ENST00000347401 KIAA1024Q9UPX6 916 aa14.18□□□□□ -0.14
COL6A3-202ENST00000347401 PRDM15P57071 1507 aaPredicted RBP14.18□□□□□ -0.14
COL6A3-202ENST00000347401 PPIL4Q8WUA2 492 aaKnown RBP eCLIP14.18□□□□□ -0.14
COL6A3-202ENST00000347401 SH3GL2Q99962 352 aa14.18□□□□□ -0.14
COL6A3-202ENST00000347401 UVRAGQ9P2Y5 699 aa14.18□□□□□ -0.14
COL6A3-202ENST00000347401 HP1BP3Q5SSJ5 553 aaPredicted RBP14.18□□□□□ -0.14
COL6A3-202ENST00000347401 FRA10AC1Q70Z53 315 aa14.18□□□□□ -0.14
COL6A3-202ENST00000347401 PDLIM2Q96JY6 352 aa14.18□□□□□ -0.14
COL6A3-202ENST00000347401 ADCY10Q96PN6 1610 aa14.18□□□□□ -0.14
COL6A3-202ENST00000347401 PTPRTO14522 1441 aa14.18□□□□□ -0.14
COL6A3-202ENST00000347401 IFNAR1P17181 557 aa14.18□□□□□ -0.14
COL6A3-202ENST00000347401 EFHBQ8N7U6 833 aa14.18□□□□□ -0.14
COL6A3-202ENST00000347401 PMS2P54278 862 aa14.18□□□□□ -0.14
COL6A3-202ENST00000347401 PCYOX1LQ8NBM8 494 aa14.18□□□□□ -0.14
COL6A3-202ENST00000347401 NEURL1BA8MQ27 555 aa14.18□□□□□ -0.14
COL6A3-202ENST00000347401 MYCLP12524 364 aaPredicted RBP14.18□□□□□ -0.14
COL6A3-202ENST00000347401 MXI1P50539 228 aa14.18□□□□□ -0.14
COL6A3-202ENST00000347401 CTSWP56202 376 aa14.18□□□□□ -0.14
COL6A3-202ENST00000347401 CYTH2Q99418 400 aa14.18□□□□□ -0.14
COL6A3-202ENST00000347401 FRMD8Q9BZ67 464 aaPredicted RBP14.18□□□□□ -0.14
COL6A3-202ENST00000347401 EPC1Q9H2F5 836 aa14.18□□□□□ -0.14
COL6A3-202ENST00000347401 PRR23D1E9PI22 279 aaPredicted RBP14.17□□□□□ -0.14
COL6A3-202ENST00000347401 MAFGO15525 162 aa14.17□□□□□ -0.14
COL6A3-202ENST00000347401 PRR23D2P0DMB1 279 aaPredicted RBP14.17□□□□□ -0.14
COL6A3-202ENST00000347401 CYP2C19P33261 490 aa14.17□□□□□ -0.14
COL6A3-202ENST00000347401 ARFIP2P53365 341 aa14.17□□□□□ -0.14
COL6A3-202ENST00000347401 ALKBH5Q6P6C2 394 aaKnown RBP14.17□□□□□ -0.14
COL6A3-202ENST00000347401 TSPYL6Q8N831 410 aa14.17□□□□□ -0.14
COL6A3-202ENST00000347401 INTUQ9ULD6 942 aa14.17□□□□□ -0.14
COL6A3-202ENST00000347401 CFBP00751 764 aa14.17□□□□□ -0.14
COL6A3-202ENST00000347401 SAT1P21673 171 aa14.17□□□□□ -0.14
COL6A3-202ENST00000347401 NCAPG2Q86XI2 1143 aa14.17□□□□□ -0.14
COL6A3-202ENST00000347401 HNRNPLLQ8WVV9 542 aaKnown RBP14.17□□□□□ -0.14
COL6A3-202ENST00000347401 USP15Q9Y4E8 981 aaPredicted RBP14.17□□□□□ -0.14
COL6A3-202ENST00000347401 MLH3Q9UHC1 1453 aa14.17□□□□□ -0.14
COL6A3-202ENST00000347401 UBN2Q6ZU65 1347 aa14.17□□□□□ -0.14
COL6A3-202ENST00000347401 PPP1R37O75864 691 aa14.17□□□□□ -0.14
COL6A3-202ENST00000347401 ZNF280CQ8ND82 737 aa14.17□□□□□ -0.14
COL6A3-202ENST00000347401 TNKSO95271 1327 aa14.17□□□□□ -0.14
COL6A3-202ENST00000347401 XKR9Q5GH70 373 aa14.17□□□□□ -0.14
COL6A3-202ENST00000347401 PLD3Q8IV08 490 aa14.17□□□□□ -0.14
COL6A3-202ENST00000347401 GLG1Q92896 1179 aa14.17□□□□□ -0.14
COL6A3-202ENST00000347401 NCLNQ969V3 563 aa14.17□□□□□ -0.14
COL6A3-202ENST00000347401 WDR47O94967 919 aa14.17□□□□□ -0.14
COL6A3-202ENST00000347401 ARHGAP27Q6ZUM4 889 aa14.17□□□□□ -0.14
COL6A3-202ENST00000347401 ERVV-2B6SEH9 535 aa14.17□□□□□ -0.14
COL6A3-202ENST00000347401 H7C0S8 307 aa14.17□□□□□ -0.14
COL6A3-202ENST00000347401 ANXA1P04083 346 aa14.17□□□□□ -0.14
COL6A3-202ENST00000347401 TIMM10P62072 90 aa14.17□□□□□ -0.14
COL6A3-202ENST00000347401 FAM173BQ6P4H8 233 aa14.17□□□□□ -0.14
COL6A3-202ENST00000347401 TMC4Q7Z404 712 aa14.17□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms