RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 WARS2Q9UGM6 360 aaKnown RBP6.89□□□□□ -1.31
VPS35-201ENST00000299138 COL4A3BPQ9Y5P4 624 aa6.89□□□□□ -1.31
VPS35-201ENST00000299138 DYNC1LI1Q9Y6G9 523 aaKnown RBP6.89□□□□□ -1.31
VPS35-201ENST00000299138 KIF13AQ9H1H9 1805 aa6.89□□□□□ -1.31
VPS35-201ENST00000299138 ZNF335Q9H4Z2 1342 aaPredicted RBP6.89□□□□□ -1.31
VPS35-201ENST00000299138 PCP4L1A6NKN8 68 aa6.88□□□□□ -1.31
VPS35-201ENST00000299138 NUDT17P0C025 328 aa6.88□□□□□ -1.31
VPS35-201ENST00000299138 CHRM1P11229 460 aaPredicted RBP6.88□□□□□ -1.31
VPS35-201ENST00000299138 ERVK-24P63145 666 aa6.88□□□□□ -1.31
VPS35-201ENST00000299138 NAB2Q15742 525 aa6.88□□□□□ -1.31
VPS35-201ENST00000299138 HIF1AQ16665 826 aa6.88□□□□□ -1.31
VPS35-201ENST00000299138 PDXDC2PQ6P474 469 aa6.88□□□□□ -1.31
VPS35-201ENST00000299138 HS2ST1Q7LGA3 356 aa6.88□□□□□ -1.31
VPS35-201ENST00000299138 MAML3Q96JK9 1138 aa6.88□□□□□ -1.31
VPS35-201ENST00000299138 UBR1Q8IWV7 1749 aa6.88□□□□□ -1.31
VPS35-201ENST00000299138 NOP56O00567 594 aaKnown RBP6.88□□□□□ -1.31
VPS35-201ENST00000299138 ZNF189O75820 626 aaPredicted RBP6.88□□□□□ -1.31
VPS35-201ENST00000299138 FOSP01100 380 aaPredicted RBP6.88□□□□□ -1.31
VPS35-201ENST00000299138 USP11P51784 963 aa6.88□□□□□ -1.31
VPS35-201ENST00000299138 MARSP56192 900 aaKnown RBP6.88□□□□□ -1.31
VPS35-201ENST00000299138 WASHC5Q12768 1159 aa6.88□□□□□ -1.31
VPS35-201ENST00000299138 ZC3H12BQ5HYM0 836 aaKnown RBP6.88□□□□□ -1.31
VPS35-201ENST00000299138 TTI2Q6NXR4 508 aa6.88□□□□□ -1.31
VPS35-201ENST00000299138 C2CD5Q86YS7 1000 aa6.88□□□□□ -1.31
VPS35-201ENST00000299138 AGGF1Q8N302 714 aaeCLIP6.88□□□□□ -1.31
VPS35-201ENST00000299138 PHKBQ93100 1093 aa6.88□□□□□ -1.31
VPS35-201ENST00000299138 NR1H4Q96RI1 486 aaPredicted RBP6.88□□□□□ -1.31
VPS35-201ENST00000299138 CCDC134Q9H6E4 229 aa6.88□□□□□ -1.31
VPS35-201ENST00000299138 ZSWIM5Q9P217 1185 aa6.88□□□□□ -1.31
VPS35-201ENST00000299138 ASIC3Q9UHC3 531 aa6.88□□□□□ -1.31
VPS35-201ENST00000299138 SFI1A8K8P3 1242 aa6.88□□□□□ -1.31
VPS35-201ENST00000299138 SNRPFP62306 86 aaKnown RBP6.88□□□□□ -1.31
VPS35-201ENST00000299138 FOXP4Q8IVH2 680 aaPredicted RBP6.88□□□□□ -1.31
VPS35-201ENST00000299138 PALM2Q8IXS6 379 aa6.88□□□□□ -1.31
VPS35-201ENST00000299138 RPGRQ92834 1020 aaKnown RBP6.88□□□□□ -1.31
VPS35-201ENST00000299138 EDC3Q96F86 508 aaKnown RBP6.88□□□□□ -1.31
VPS35-201ENST00000299138 ZBED2Q9BTP6 218 aa6.88□□□□□ -1.31
VPS35-201ENST00000299138 PUS7LQ9H0K6 701 aaKnown RBP6.88□□□□□ -1.31
VPS35-201ENST00000299138 ATP11BQ9Y2G3 1177 aa6.88□□□□□ -1.31
VPS35-201ENST00000299138 MAD1L1Q9Y6D9 718 aa6.88□□□□□ -1.31
VPS35-201ENST00000299138 P4HA2O15460 535 aa6.88□□□□□ -1.31
VPS35-201ENST00000299138 FAM26FQ5R3K3 315 aa6.88□□□□□ -1.31
VPS35-201ENST00000299138 BRINP3Q76B58 766 aa6.88□□□□□ -1.31
VPS35-201ENST00000299138 TMBIM4Q9HC24 238 aa6.88□□□□□ -1.31
VPS35-201ENST00000299138 HAUS2Q9NVX0 235 aa6.88□□□□□ -1.31
VPS35-201ENST00000299138 PASKQ96RG2 1323 aa6.88□□□□□ -1.31
VPS35-201ENST00000299138 TBCAO75347 108 aaKnown RBP6.88□□□□□ -1.31
VPS35-201ENST00000299138 ST13P50502 369 aaKnown RBP6.88□□□□□ -1.31
VPS35-201ENST00000299138 PEX26Q7Z412 305 aa6.88□□□□□ -1.31
VPS35-201ENST00000299138 ZNF444Q8N0Y2 327 aaPredicted RBP6.88□□□□□ -1.31
VPS35-201ENST00000299138 ATXN2LQ8WWM7 1075 aaKnown RBP6.88□□□□□ -1.31
VPS35-201ENST00000299138 MPP4Q96JB8 637 aa6.88□□□□□ -1.31
VPS35-201ENST00000299138 GPR101Q96P66 508 aaPredicted RBP6.88□□□□□ -1.31
VPS35-201ENST00000299138 TRIM9Q9C026 710 aa6.88□□□□□ -1.31
VPS35-201ENST00000299138 FAM96AQ9H5X1 160 aa6.88□□□□□ -1.31
VPS35-201ENST00000299138 BTG4Q9NY30 223 aa6.88□□□□□ -1.31
VPS35-201ENST00000299138 SPATA31A3Q5VYP0 1347 aa6.88□□□□□ -1.31
VPS35-201ENST00000299138 TBX3O15119 743 aa6.87□□□□□ -1.31
VPS35-201ENST00000299138 PRKCIP41743 596 aa6.87□□□□□ -1.31
VPS35-201ENST00000299138 STX1BP61266 288 aa6.87□□□□□ -1.31
VPS35-201ENST00000299138 CYFIP1Q7L576 1253 aa6.87□□□□□ -1.31
VPS35-201ENST00000299138 SH3BP5LQ7L8J4 393 aa6.87□□□□□ -1.31
VPS35-201ENST00000299138 USP38Q8NB14 1042 aa6.87□□□□□ -1.31
VPS35-201ENST00000299138 FAM89AQ96GI7 184 aa6.87□□□□□ -1.31
VPS35-201ENST00000299138 UBN1Q9NPG3 1134 aa6.87□□□□□ -1.31
VPS35-201ENST00000299138 SBDSQ9Y3A5 250 aaKnown RBP eCLIP6.87□□□□□ -1.31
VPS35-201ENST00000299138 MYO3BQ8WXR4 1341 aa6.87□□□□□ -1.31
VPS35-201ENST00000299138 MYO5BQ9ULV0 1848 aa6.87□□□□□ -1.31
VPS35-201ENST00000299138 THAP12O43422 761 aa6.87□□□□□ -1.31
VPS35-201ENST00000299138 SPOPO43791 374 aa6.87□□□□□ -1.31
VPS35-201ENST00000299138 KRT5P13647 590 aa6.87□□□□□ -1.31
VPS35-201ENST00000299138 CDC27P30260 824 aa6.87□□□□□ -1.31
VPS35-201ENST00000299138 STAT1P42224 750 aa6.87□□□□□ -1.31
VPS35-201ENST00000299138 ECE1P42892 770 aa6.87□□□□□ -1.31
VPS35-201ENST00000299138 NAALADL2Q58DX5 795 aa6.87□□□□□ -1.31
VPS35-201ENST00000299138 NME8Q8N427 588 aa6.87□□□□□ -1.31
VPS35-201ENST00000299138 LARP4BQ92615 738 aaKnown RBP6.87□□□□□ -1.31
VPS35-201ENST00000299138 CCDC124Q96CT7 223 aaKnown RBP6.87□□□□□ -1.31
VPS35-201ENST00000299138 FGD4Q96M96 766 aa6.87□□□□□ -1.31
VPS35-201ENST00000299138 TUBGCP6Q96RT7 1819 aa6.87□□□□□ -1.31
VPS35-201ENST00000299138 ATP1A1P05023 1023 aaKnown RBP6.87□□□□□ -1.31
VPS35-201ENST00000299138 KRT17Q04695 432 aa6.87□□□□□ -1.31
VPS35-201ENST00000299138 GRM4Q14833 912 aa6.87□□□□□ -1.31
VPS35-201ENST00000299138 CEP55Q53EZ4 464 aa6.87□□□□□ -1.31
VPS35-201ENST00000299138 FRMD5Q7Z6J6 570 aa6.87□□□□□ -1.31
VPS35-201ENST00000299138 GPIHBP1Q8IV16 184 aa6.87□□□□□ -1.31
VPS35-201ENST00000299138 SLFN12Q8IYM2 578 aa6.87□□□□□ -1.31
VPS35-201ENST00000299138 REXO1Q8N1G1 1221 aaKnown RBP6.87□□□□□ -1.31
VPS35-201ENST00000299138 KCNV2Q8TDN2 545 aa6.87□□□□□ -1.31
VPS35-201ENST00000299138 KLHL29Q96CT2 875 aa6.87□□□□□ -1.31
VPS35-201ENST00000299138 CYFIP2Q96F07 1278 aa6.87□□□□□ -1.31
VPS35-201ENST00000299138 ZBTB3Q9H5J0 574 aa6.87□□□□□ -1.31
VPS35-201ENST00000299138 AK9Q5TCS8 1911 aa6.87□□□□□ -1.31
VPS35-201ENST00000299138 ANKRD65E5RJM6 399 aa6.87□□□□□ -1.31
VPS35-201ENST00000299138 VCAM1P19320 739 aa6.87□□□□□ -1.31
VPS35-201ENST00000299138 EIF4A3P38919 411 aaKnown RBP6.87□□□□□ -1.31
VPS35-201ENST00000299138 GUCY2DQ02846 1103 aa6.87□□□□□ -1.31
VPS35-201ENST00000299138 SEC23AQ15436 765 aa6.87□□□□□ -1.31
VPS35-201ENST00000299138 ZNF174Q15697 407 aa6.87□□□□□ -1.31
VPS35-201ENST00000299138 CLEC4GQ6UXB4 293 aa6.87□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms