RNA–Protein interactions for RNA: ENST00000251722.10

USP40-201, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene USP40, Length 5,692 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-201ENST00000251722 ZNF560Q96MR9 790 aa13.71□□□□□ -0.21
USP40-201ENST00000251722 CLIC6Q96NY7 704 aa13.71□□□□□ -0.21
USP40-201ENST00000251722 DDX50Q9BQ39 737 aaKnown RBP13.71□□□□□ -0.21
USP40-201ENST00000251722 LMCD1Q9NZU5 365 aa13.71□□□□□ -0.21
USP40-201ENST00000251722 PCDHA5Q9Y5H7 936 aa13.71□□□□□ -0.21
USP40-201ENST00000251722 PFASO15067 1338 aa13.71□□□□□ -0.21
USP40-201ENST00000251722 HPDP32754 393 aaPredicted RBP13.71□□□□□ -0.22
USP40-201ENST00000251722 DHX38Q92620 1227 aaKnown RBP13.71□□□□□ -0.22
USP40-201ENST00000251722 NYAP2Q9P242 653 aa13.71□□□□□ -0.22
USP40-201ENST00000251722 QARSP47897 775 aaKnown RBP13.7□□□□□ -0.22
USP40-201ENST00000251722 IFRD2Q12894 506 aaPredicted RBP13.7□□□□□ -0.22
USP40-201ENST00000251722 EFHBQ8N7U6 833 aa13.7□□□□□ -0.22
USP40-201ENST00000251722 TTC25Q96NG3 672 aa13.7□□□□□ -0.22
USP40-201ENST00000251722 TRIM31Q9BZY9 425 aa13.7□□□□□ -0.22
USP40-201ENST00000251722 MAP3K20Q9NYL2 800 aaKnown RBP13.7□□□□□ -0.22
USP40-201ENST00000251722 PPP2R2CQ9Y2T4 447 aa13.7□□□□□ -0.22
USP40-201ENST00000251722 UBN2Q6ZU65 1347 aa13.7□□□□□ -0.22
USP40-201ENST00000251722 E9PCH4 1651 aa13.7□□□□□ -0.22
USP40-201ENST00000251722 HUS1O60921 280 aa13.7□□□□□ -0.22
USP40-201ENST00000251722 TOGARAM2Q6ZUX3 1019 aa13.7□□□□□ -0.22
USP40-201ENST00000251722 FBXO41Q8TF61 875 aa13.7□□□□□ -0.22
USP40-201ENST00000251722 FANCLQ9NW38 375 aa13.7□□□□□ -0.22
USP40-201ENST00000251722 SEPT10Q9P0V9 454 aa13.7□□□□□ -0.22
USP40-201ENST00000251722 SART1O43290 800 aaKnown RBP13.7□□□□□ -0.22
USP40-201ENST00000251722 CETPP11597 493 aa13.7□□□□□ -0.22
USP40-201ENST00000251722 PLCG1P19174 1290 aa13.7□□□□□ -0.22
USP40-201ENST00000251722 COG2Q14746 738 aa13.7□□□□□ -0.22
USP40-201ENST00000251722 KRT71Q3SY84 523 aa13.7□□□□□ -0.22
USP40-201ENST00000251722 TBC1D16Q8TBP0 767 aa13.7□□□□□ -0.22
USP40-201ENST00000251722 MRPL4Q9BYD3 311 aaKnown RBP13.7□□□□□ -0.22
USP40-201ENST00000251722 GCNT4Q9P109 453 aa13.7□□□□□ -0.22
USP40-201ENST00000251722 CLDN3O15551 220 aa13.7□□□□□ -0.22
USP40-201ENST00000251722 TTI1O43156 1089 aa13.7□□□□□ -0.22
USP40-201ENST00000251722 SMARCA1P28370 1054 aa13.7□□□□□ -0.22
USP40-201ENST00000251722 VPS41P49754 854 aa13.7□□□□□ -0.22
USP40-201ENST00000251722 CCDC151A5D8V7 595 aa13.7□□□□□ -0.22
USP40-201ENST00000251722 CALB1P05937 261 aa13.7□□□□□ -0.22
USP40-201ENST00000251722 TPP2P29144 1249 aaPredicted RBP13.7□□□□□ -0.22
USP40-201ENST00000251722 RSBN1LQ6PCB5 846 aaPredicted RBP13.7□□□□□ -0.22
USP40-201ENST00000251722 EIF2AQ9BY44 585 aaKnown RBP13.7□□□□□ -0.22
USP40-201ENST00000251722 TUFT1Q9NNX1 390 aa13.7□□□□□ -0.22
USP40-201ENST00000251722 SERPINA10Q9UK55 444 aa13.7□□□□□ -0.22
USP40-201ENST00000251722 CEP170BQ9Y4F5 1589 aaPredicted RBP13.7□□□□□ -0.22
USP40-201ENST00000251722 KBTBD13C9JR72 458 aa13.69□□□□□ -0.22
USP40-201ENST00000251722 ADCK5Q3MIX3 580 aa13.69□□□□□ -0.22
USP40-201ENST00000251722 TTC13Q8NBP0 860 aa13.69□□□□□ -0.22
USP40-201ENST00000251722 RAET1EQ8TD07 263 aa13.69□□□□□ -0.22
USP40-201ENST00000251722 PGBD4Q96DM1 585 aa13.69□□□□□ -0.22
USP40-201ENST00000251722 FRMD4AQ9P2Q2 1039 aaPredicted RBP13.69□□□□□ -0.22
USP40-201ENST00000251722 PPP2R3BQ9Y5P8 575 aa13.69□□□□□ -0.22
USP40-201ENST00000251722 REREQ9P2R6 1566 aa13.69□□□□□ -0.22
USP40-201ENST00000251722 STX2P32856 288 aa13.69□□□□□ -0.22
USP40-201ENST00000251722 NAIF1Q69YI7 327 aaPredicted RBP13.69□□□□□ -0.22
USP40-201ENST00000251722 BARHL2Q9NY43 387 aa13.69□□□□□ -0.22
USP40-201ENST00000251722 TNPO2O14787 897 aaKnown RBP13.69□□□□□ -0.22
USP40-201ENST00000251722 UBE2SQ16763 222 aa13.69□□□□□ -0.22
USP40-201ENST00000251722 FAM151AQ8WW52 585 aa13.69□□□□□ -0.22
USP40-201ENST00000251722 VPS33BQ9H267 617 aa13.69□□□□□ -0.22
USP40-201ENST00000251722 RAVER2Q9HCJ3 691 aaKnown RBP13.69□□□□□ -0.22
USP40-201ENST00000251722 KCND2Q9NZV8 630 aa13.69□□□□□ -0.22
USP40-201ENST00000251722 ADAM21Q9UKJ8 722 aa13.69□□□□□ -0.22
USP40-201ENST00000251722 MAFGO15525 162 aa13.69□□□□□ -0.22
USP40-201ENST00000251722 TRAPPC3O43617 180 aa13.69□□□□□ -0.22
USP40-201ENST00000251722 EVI5O60447 810 aa13.69□□□□□ -0.22
USP40-201ENST00000251722 HOXC6P09630 235 aa13.69□□□□□ -0.22
USP40-201ENST00000251722 NKX1-1Q15270 411 aaPredicted RBP13.69□□□□□ -0.22
USP40-201ENST00000251722 EPHA7Q15375 998 aa13.69□□□□□ -0.22
USP40-201ENST00000251722 ST13P4Q8IZP2 240 aaPredicted RBP13.69□□□□□ -0.22
USP40-201ENST00000251722 MAP3K14Q99558 947 aa13.69□□□□□ -0.22
USP40-201ENST00000251722 KIF9Q9HAQ2 790 aa13.69□□□□□ -0.22
USP40-201ENST00000251722 TSC22D4Q9Y3Q8 395 aa13.69□□□□□ -0.22
USP40-201ENST00000251722 F5H6K3 240 aa13.68□□□□□ -0.22
USP40-201ENST00000251722 DPYSL4O14531 572 aa13.68□□□□□ -0.22
USP40-201ENST00000251722 TBX3O15119 743 aa13.68□□□□□ -0.22
USP40-201ENST00000251722 PRDX5P30044 214 aa13.68□□□□□ -0.22
USP40-201ENST00000251722 ECE1P42892 770 aa13.68□□□□□ -0.22
USP40-201ENST00000251722 KLRC3Q07444 240 aa13.68□□□□□ -0.22
USP40-201ENST00000251722 SLC44A4Q53GD3 710 aa13.68□□□□□ -0.22
USP40-201ENST00000251722 OR6B2Q6IFH4 312 aa13.68□□□□□ -0.22
USP40-201ENST00000251722 TRIM72Q6ZMU5 477 aa13.68□□□□□ -0.22
USP40-201ENST00000251722 ARHGEF18Q6ZSZ5 1173 aa13.68□□□□□ -0.22
USP40-201ENST00000251722 XXYLT1Q8NBI6 393 aa13.68□□□□□ -0.22
USP40-201ENST00000251722 FAM84BQ96KN1 310 aaPredicted RBP13.68□□□□□ -0.22
USP40-201ENST00000251722 HEXIM2Q96MH2 286 aaKnown RBP13.68□□□□□ -0.22
USP40-201ENST00000251722 CTNNA1P35221 906 aaKnown RBP13.68□□□□□ -0.22
USP40-201ENST00000251722 GPC3P51654 580 aa13.68□□□□□ -0.22
USP40-201ENST00000251722 KCNQ4P56696 695 aa13.68□□□□□ -0.22
USP40-201ENST00000251722 SPP2Q13103 211 aa13.68□□□□□ -0.22
USP40-201ENST00000251722 INAQ16352 499 aa13.68□□□□□ -0.22
USP40-201ENST00000251722 LARP7Q4G0J3 582 aaKnown RBP eCLIP13.68□□□□□ -0.22
USP40-201ENST00000251722 BSPRYQ5W0U4 402 aa13.68□□□□□ -0.22
USP40-201ENST00000251722 SGMS1Q86VZ5 419 aa13.68□□□□□ -0.22
USP40-201ENST00000251722 CHST13Q8NET6 341 aa13.68□□□□□ -0.22
USP40-201ENST00000251722 SH3TC2Q8TF17 1288 aa13.68□□□□□ -0.22
USP40-201ENST00000251722 FGD4Q96M96 766 aa13.68□□□□□ -0.22
USP40-201ENST00000251722 EDEM3Q9BZQ6 932 aa13.68□□□□□ -0.22
USP40-201ENST00000251722 DDIT3P35638 169 aa13.68□□□□□ -0.22
USP40-201ENST00000251722 RECQLP46063 649 aaPredicted RBP13.68□□□□□ -0.22
USP40-201ENST00000251722 RNASE9P60153 205 aaKnown RBP13.68□□□□□ -0.22
USP40-201ENST00000251722 SFSWAPQ12872 951 aaKnown RBP13.68□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms