RNA–Protein interactions for RNA: ENST00000238497.9

VPS4B-201, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4B, Length 3,324 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-201ENST00000238497 GNPTABQ3T906 1256 aa9.57□□□□□ -0.88
VPS4B-201ENST00000238497 ACRBPQ8NEB7 543 aa9.57□□□□□ -0.88
VPS4B-201ENST00000238497 SPATA33Q96N06 139 aa9.57□□□□□ -0.88
VPS4B-201ENST00000238497 UPF3AQ9H1J1 476 aaKnown RBP9.57□□□□□ -0.88
VPS4B-201ENST00000238497 HIPK3Q9H422 1215 aa9.57□□□□□ -0.88
VPS4B-201ENST00000238497 RMND1Q9NWS8 449 aa9.57□□□□□ -0.88
VPS4B-201ENST00000238497 PUF60Q9UHX1 559 aaKnown RBP9.57□□□□□ -0.88
VPS4B-201ENST00000238497 GUCA1BQ9UMX6 200 aa9.57□□□□□ -0.88
VPS4B-201ENST00000238497 PPP2R2CQ9Y2T4 447 aa9.57□□□□□ -0.88
VPS4B-201ENST00000238497 NPHP3-ACAD11A0A0J9YXS1 232 aa9.57□□□□□ -0.88
VPS4B-201ENST00000238497 ZBBXA8MT70 800 aa9.57□□□□□ -0.88
VPS4B-201ENST00000238497 E9PMD0 336 aa9.57□□□□□ -0.88
VPS4B-201ENST00000238497 OPLAHO14841 1288 aa9.57□□□□□ -0.88
VPS4B-201ENST00000238497 RRP9O43818 475 aaKnown RBP9.57□□□□□ -0.88
VPS4B-201ENST00000238497 ITGB8P26012 769 aa9.57□□□□□ -0.88
VPS4B-201ENST00000238497 CASQ1P31415 396 aa9.57□□□□□ -0.88
VPS4B-201ENST00000238497 FPGSQ05932 587 aa9.57□□□□□ -0.88
VPS4B-201ENST00000238497 NBPF20Q3BBV1 942 aa9.57□□□□□ -0.88
VPS4B-201ENST00000238497 CCSAPQ6IQ19 270 aaPredicted RBP9.57□□□□□ -0.88
VPS4B-201ENST00000238497 Q7L0L9 218 aa9.57□□□□□ -0.88
VPS4B-201ENST00000238497 DRC1Q96MC2 740 aa9.57□□□□□ -0.88
VPS4B-201ENST00000238497 CRACR2AQ9BSW2 395 aa9.57□□□□□ -0.88
VPS4B-201ENST00000238497 CARD6Q9BX69 1037 aa9.57□□□□□ -0.88
VPS4B-201ENST00000238497 PAXBP1Q9Y5B6 917 aa9.57□□□□□ -0.88
VPS4B-201ENST00000238497 MYH6P13533 1939 aa9.56□□□□□ -0.88
VPS4B-201ENST00000238497 SFI1A8K8P3 1242 aa9.56□□□□□ -0.88
VPS4B-201ENST00000238497 NKRFO15226 690 aaKnown RBP eCLIP9.56□□□□□ -0.88
VPS4B-201ENST00000238497 ZNF286BP0CG31 522 aa9.56□□□□□ -0.88
VPS4B-201ENST00000238497 CSF2RAP15509 400 aa9.56□□□□□ -0.88
VPS4B-201ENST00000238497 KLK7P49862 253 aa9.56□□□□□ -0.88
VPS4B-201ENST00000238497 NAP1L1P55209 391 aaKnown RBP9.56□□□□□ -0.88
VPS4B-201ENST00000238497 PGM5Q15124 567 aa9.56□□□□□ -0.88
VPS4B-201ENST00000238497 UTP14CQ5TAP6 766 aaKnown RBP9.56□□□□□ -0.88
VPS4B-201ENST00000238497 PDXDC2PQ6P474 469 aa9.56□□□□□ -0.88
VPS4B-201ENST00000238497 DEFB128Q7Z7B8 93 aa9.56□□□□□ -0.88
VPS4B-201ENST00000238497 TRIML1Q8N9V2 468 aa9.56□□□□□ -0.88
VPS4B-201ENST00000238497 LRRN4CLQ8ND94 238 aa9.56□□□□□ -0.88
VPS4B-201ENST00000238497 RAB34Q9BZG1 259 aa9.56□□□□□ -0.88
VPS4B-201ENST00000238497 FAM207AQ9NSI2 230 aaPredicted RBP9.56□□□□□ -0.88
VPS4B-201ENST00000238497 ZSCAN12O43309 604 aa9.56□□□□□ -0.88
VPS4B-201ENST00000238497 EDNRBP24530 442 aa9.56□□□□□ -0.88
VPS4B-201ENST00000238497 ERCC5P28715 1186 aaPredicted RBP9.56□□□□□ -0.88
VPS4B-201ENST00000238497 COPB1P53618 953 aaKnown RBP9.56□□□□□ -0.88
VPS4B-201ENST00000238497 ZNF569Q5MCW4 686 aa9.56□□□□□ -0.88
VPS4B-201ENST00000238497 ZNF658Q5TYW1 1059 aaPredicted RBP9.56□□□□□ -0.88
VPS4B-201ENST00000238497 ARL6IP4Q66PJ3 421 aaKnown RBP9.56□□□□□ -0.88
VPS4B-201ENST00000238497 GLIS3Q8NEA6 775 aa9.56□□□□□ -0.88
VPS4B-201ENST00000238497 MORC4Q8TE76 937 aa9.56□□□□□ -0.88
VPS4B-201ENST00000238497 MTMR8Q96EF0 704 aa9.56□□□□□ -0.88
VPS4B-201ENST00000238497 SH2D3AQ9BRG2 576 aa9.56□□□□□ -0.88
VPS4B-201ENST00000238497 CUL9Q8IWT3 2517 aa9.56□□□□□ -0.88
VPS4B-201ENST00000238497 LOC102724159A0A0B4J2E5 919 aa9.56□□□□□ -0.88
VPS4B-201ENST00000238497 HSD17B4P51659 736 aa9.56□□□□□ -0.88
VPS4B-201ENST00000238497 AMPD3Q01432 767 aa9.56□□□□□ -0.88
VPS4B-201ENST00000238497 SNX17Q15036 470 aa9.56□□□□□ -0.88
VPS4B-201ENST00000238497 PWP2Q15269 919 aaKnown RBP9.56□□□□□ -0.88
VPS4B-201ENST00000238497 NAALADL2Q58DX5 795 aa9.56□□□□□ -0.88
VPS4B-201ENST00000238497 HERC4Q5GLZ8 1057 aaPredicted RBP9.56□□□□□ -0.88
VPS4B-201ENST00000238497 TMEM199Q8N511 208 aa9.56□□□□□ -0.88
VPS4B-201ENST00000238497 DEFB123Q8N688 67 aa9.56□□□□□ -0.88
VPS4B-201ENST00000238497 TC2NQ8N9U0 490 aa9.56□□□□□ -0.88
VPS4B-201ENST00000238497 SCLYQ96I15 445 aa9.56□□□□□ -0.88
VPS4B-201ENST00000238497 NOC4LQ9BVI4 516 aaKnown RBP9.56□□□□□ -0.88
VPS4B-201ENST00000238497 SH3GLB2Q9NR46 395 aa9.56□□□□□ -0.88
VPS4B-201ENST00000238497 CLSTN1O94985 981 aa9.55□□□□□ -0.88
VPS4B-201ENST00000238497 PURAQ00577 322 aaKnown RBP9.55□□□□□ -0.88
VPS4B-201ENST00000238497 E2F4Q16254 413 aa9.55□□□□□ -0.88
VPS4B-201ENST00000238497 DGKDQ16760 1214 aa9.55□□□□□ -0.88
VPS4B-201ENST00000238497 CYFIP1Q7L576 1253 aa9.55□□□□□ -0.88
VPS4B-201ENST00000238497 OTOP2Q7RTS6 562 aa9.55□□□□□ -0.88
VPS4B-201ENST00000238497 VSIG10LQ86VR7 867 aa9.55□□□□□ -0.88
VPS4B-201ENST00000238497 ZNF710Q8N1W2 664 aa9.55□□□□□ -0.88
VPS4B-201ENST00000238497 C7orf31Q8N865 590 aa9.55□□□□□ -0.88
VPS4B-201ENST00000238497 C4orf32Q8N8J7 132 aa9.55□□□□□ -0.88
VPS4B-201ENST00000238497 CYP2W1Q8TAV3 490 aa9.55□□□□□ -0.88
VPS4B-201ENST00000238497 LRRC15Q8TF66 581 aa9.55□□□□□ -0.88
VPS4B-201ENST00000238497 UBXN4Q92575 508 aa9.55□□□□□ -0.88
VPS4B-201ENST00000238497 TOX2Q96NM4 488 aa9.55□□□□□ -0.88
VPS4B-201ENST00000238497 PDCL3Q9H2J4 239 aa9.55□□□□□ -0.88
VPS4B-201ENST00000238497 DDX41Q9UJV9 622 aaKnown RBP9.55□□□□□ -0.88
VPS4B-201ENST00000238497 Q9Y3F1 56 aa9.55□□□□□ -0.88
VPS4B-201ENST00000238497 UMODL1Q5DID0 1318 aa9.55□□□□□ -0.88
VPS4B-201ENST00000238497 POTEB3A0JP26 581 aa9.55□□□□□ -0.88
VPS4B-201ENST00000238497 B4GALT4O60513 344 aa9.55□□□□□ -0.88
VPS4B-201ENST00000238497 LAMC2Q13753 1193 aa9.55□□□□□ -0.88
VPS4B-201ENST00000238497 GLIPR1L2Q4G1C9 344 aa9.55□□□□□ -0.88
VPS4B-201ENST00000238497 TCERG1LQ5VWI1 586 aa9.55□□□□□ -0.88
VPS4B-201ENST00000238497 POTEBQ6S5H4 581 aa9.55□□□□□ -0.88
VPS4B-201ENST00000238497 ANKRD33Q7Z3H0 272 aa9.55□□□□□ -0.88
VPS4B-201ENST00000238497 KCNK18Q7Z418 384 aa9.55□□□□□ -0.88
VPS4B-201ENST00000238497 FAM126BQ8IXS8 530 aa9.55□□□□□ -0.88
VPS4B-201ENST00000238497 RETREG2Q8NC44 543 aa9.55□□□□□ -0.88
VPS4B-201ENST00000238497 CTAGE1Q96RT6 745 aa9.55□□□□□ -0.88
VPS4B-201ENST00000238497 WDR24Q96S15 920 aa9.55□□□□□ -0.88
VPS4B-201ENST00000238497 UTP3Q9NQZ2 479 aaKnown RBP eCLIP9.55□□□□□ -0.88
VPS4B-201ENST00000238497 FAM237AA0A1B0GTK4 181 aa9.54□□□□□ -0.88
VPS4B-201ENST00000238497 ARHGAP6O43182 974 aa9.54□□□□□ -0.88
VPS4B-201ENST00000238497 TIMP1P01033 207 aa9.54□□□□□ -0.88
VPS4B-201ENST00000238497 BMP8BP34820 402 aa9.54□□□□□ -0.88
VPS4B-201ENST00000238497 NR1I3Q14994 352 aa9.54□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms