RNA–Protein interactions for RNA: ENST00000642141.1

SCN1A-222, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 921 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-222ENST00000642141 BTG3Q14201 252 aaPredicted RBP11.64□□□□□ -0.55
SCN1A-222ENST00000642141 UGCGQ16739 394 aa11.64□□□□□ -0.55
SCN1A-222ENST00000642141 ZNF484Q5JVG2 852 aa11.64□□□□□ -0.55
SCN1A-222ENST00000642141 LRCH2Q5VUJ6 765 aa11.64□□□□□ -0.55
SCN1A-222ENST00000642141 CPLX2Q6PUV4 134 aaKnown RBP11.64□□□□□ -0.55
SCN1A-222ENST00000642141 EP400NLQ6ZTU2 488 aa11.64□□□□□ -0.55
SCN1A-222ENST00000642141 NME8Q8N427 588 aa11.64□□□□□ -0.55
SCN1A-222ENST00000642141 LRRC71Q8N4P6 559 aa11.64□□□□□ -0.55
SCN1A-222ENST00000642141 TMEM40Q8WWA1 233 aa11.64□□□□□ -0.55
SCN1A-222ENST00000642141 SLKQ9H2G2 1235 aaPredicted RBP11.64□□□□□ -0.55
SCN1A-222ENST00000642141 UNC45AQ9H3U1 944 aa11.64□□□□□ -0.55
SCN1A-222ENST00000642141 DISC1Q9NRI5 854 aa11.64□□□□□ -0.55
SCN1A-222ENST00000642141 NOC2LQ9Y3T9 749 aaKnown RBP11.64□□□□□ -0.55
SCN1A-222ENST00000642141 MAFBQ9Y5Q3 323 aaPredicted RBP11.64□□□□□ -0.55
SCN1A-222ENST00000642141 COL4A4P53420 1690 aaPredicted RBP11.64□□□□□ -0.55
SCN1A-222ENST00000642141 IGSF9BQ9UPX0 1349 aa11.63□□□□□ -0.55
SCN1A-222ENST00000642141 TMEM150BA6NC51 233 aa11.63□□□□□ -0.55
SCN1A-222ENST00000642141 WDR64B1ANS9 1081 aa11.63□□□□□ -0.55
SCN1A-222ENST00000642141 EPB41L2O43491 1005 aaKnown RBP11.63□□□□□ -0.55
SCN1A-222ENST00000642141 ZNF862O60290 1169 aa11.63□□□□□ -0.55
SCN1A-222ENST00000642141 MGEA5O60502 916 aa11.63□□□□□ -0.55
SCN1A-222ENST00000642141 C22orf31O95567 290 aa11.63□□□□□ -0.55
SCN1A-222ENST00000642141 FOSBP53539 338 aa11.63□□□□□ -0.55
SCN1A-222ENST00000642141 NPY5RQ15761 445 aa11.63□□□□□ -0.55
SCN1A-222ENST00000642141 INF2Q27J81 1249 aa11.63□□□□□ -0.55
SCN1A-222ENST00000642141 AAK1Q2M2I8 961 aa11.63□□□□□ -0.55
SCN1A-222ENST00000642141 SMAP1Q8IYB5 467 aaPredicted RBP11.63□□□□□ -0.55
SCN1A-222ENST00000642141 OXER1Q8TDS5 423 aa11.63□□□□□ -0.55
SCN1A-222ENST00000642141 BBXQ8WY36 941 aaPredicted RBP11.63□□□□□ -0.55
SCN1A-222ENST00000642141 SLC5A5Q92911 643 aa11.63□□□□□ -0.55
SCN1A-222ENST00000642141 OSMRQ99650 979 aa11.63□□□□□ -0.55
SCN1A-222ENST00000642141 SH2D3AQ9BRG2 576 aa11.63□□□□□ -0.55
SCN1A-222ENST00000642141 LMCD1Q9NZU5 365 aa11.63□□□□□ -0.55
SCN1A-222ENST00000642141 ST3GAL5Q9UNP4 418 aa11.63□□□□□ -0.55
SCN1A-222ENST00000642141 TCF20Q9UGU0 1960 aaKnown RBP11.63□□□□□ -0.55
SCN1A-222ENST00000642141 SIP14410 1827 aa11.63□□□□□ -0.55
SCN1A-222ENST00000642141 DENND3A2RUS2 1198 aa11.62□□□□□ -0.55
SCN1A-222ENST00000642141 H3BNC9 293 aa11.62□□□□□ -0.55
SCN1A-222ENST00000642141 GRM6O15303 877 aa11.62□□□□□ -0.55
SCN1A-222ENST00000642141 RPS6KA5O75582 802 aa11.62□□□□□ -0.55
SCN1A-222ENST00000642141 DGKIO75912 1065 aa11.62□□□□□ -0.55
SCN1A-222ENST00000642141 SEC24BO95487 1268 aa11.62□□□□□ -0.55
SCN1A-222ENST00000642141 KCNA5P22460 613 aa11.62□□□□□ -0.55
SCN1A-222ENST00000642141 BMPR1AP36894 532 aa11.62□□□□□ -0.55
SCN1A-222ENST00000642141 AK2P54819 239 aa11.62□□□□□ -0.55
SCN1A-222ENST00000642141 PRKCEQ02156 737 aa11.62□□□□□ -0.55
SCN1A-222ENST00000642141 PTPROQ16827 1216 aa11.62□□□□□ -0.55
SCN1A-222ENST00000642141 LETM2Q2VYF4 491 aa11.62□□□□□ -0.55
SCN1A-222ENST00000642141 EFCAB12Q6NXP0 572 aa11.62□□□□□ -0.55
SCN1A-222ENST00000642141 MIER3Q7Z3K6 550 aa11.62□□□□□ -0.55
SCN1A-222ENST00000642141 MRPL38Q96DV4 380 aaKnown RBP11.62□□□□□ -0.55
SCN1A-222ENST00000642141 ADAM2Q99965 735 aa11.62□□□□□ -0.55
SCN1A-222ENST00000642141 TEKT3Q9BXF9 490 aa11.62□□□□□ -0.55
SCN1A-222ENST00000642141 ERVK-5Q9HDB9 667 aa11.62□□□□□ -0.55
SCN1A-222ENST00000642141 ALG13Q9NP73 1137 aaKnown RBP11.62□□□□□ -0.55
SCN1A-222ENST00000642141 NRBP2Q9NSY0 501 aa11.62□□□□□ -0.55
SCN1A-222ENST00000642141 LRFN2Q9ULH4 789 aa11.62□□□□□ -0.55
SCN1A-222ENST00000642141 COG5Q9UP83 839 aa11.62□□□□□ -0.55
SCN1A-222ENST00000642141 AKT3Q9Y243 479 aa11.62□□□□□ -0.55
SCN1A-222ENST00000642141 MRPL42Q9Y6G3 142 aaKnown RBP11.62□□□□□ -0.55
SCN1A-222ENST00000642141 MUC3AQ02505 3323 aa11.62□□□□□ -0.55
SCN1A-222ENST00000642141 ADGRA3Q8IWK6 1321 aa11.61□□□□□ -0.55
SCN1A-222ENST00000642141 TTC28Q96AY4 2481 aa11.61□□□□□ -0.55
SCN1A-222ENST00000642141 M0R2N6 131 aa11.61□□□□□ -0.55
SCN1A-222ENST00000642141 SLC37A4O43826 429 aa11.61□□□□□ -0.55
SCN1A-222ENST00000642141 PFKFB2O60825 505 aa11.61□□□□□ -0.55
SCN1A-222ENST00000642141 CSDE1O75534 798 aaKnown RBP11.61□□□□□ -0.55
SCN1A-222ENST00000642141 PSMD10O75832 226 aa11.61□□□□□ -0.55
SCN1A-222ENST00000642141 CDKL5O76039 1030 aa11.61□□□□□ -0.55
SCN1A-222ENST00000642141 LARGE1O95461 756 aa11.61□□□□□ -0.55
SCN1A-222ENST00000642141 CTDNEP1O95476 244 aa11.61□□□□□ -0.55
SCN1A-222ENST00000642141 OATP04181 439 aa11.61□□□□□ -0.55
SCN1A-222ENST00000642141 RPLP2P05387 115 aaKnown RBP11.61□□□□□ -0.55
SCN1A-222ENST00000642141 NLRP11P59045 1033 aaKnown RBP11.61□□□□□ -0.55
SCN1A-222ENST00000642141 NONOQ15233 471 aaKnown RBP eCLIP11.61□□□□□ -0.55
SCN1A-222ENST00000642141 TCEAL5Q5H9L2 206 aa11.61□□□□□ -0.55
SCN1A-222ENST00000642141 FAM102BQ5T8I3 360 aa11.61□□□□□ -0.55
SCN1A-222ENST00000642141 BANK1Q8NDB2 785 aa11.61□□□□□ -0.55
SCN1A-222ENST00000642141 ZNF689Q96CS4 500 aaPredicted RBP11.61□□□□□ -0.55
SCN1A-222ENST00000642141 SAMD11Q96NU1 681 aa11.61□□□□□ -0.55
SCN1A-222ENST00000642141 RIT2Q99578 217 aa11.61□□□□□ -0.55
SCN1A-222ENST00000642141 FTHL17Q9BXU8 183 aa11.61□□□□□ -0.55
SCN1A-222ENST00000642141 ORC3Q9UBD5 711 aaPredicted RBP11.61□□□□□ -0.55
SCN1A-222ENST00000642141 DDX25Q9UHL0 483 aaKnown RBP11.61□□□□□ -0.55
SCN1A-222ENST00000642141 PCDHB7Q9Y5E2 793 aa11.61□□□□□ -0.55
SCN1A-222ENST00000642141 COL1A2P08123 1366 aa11.61□□□□□ -0.55
SCN1A-222ENST00000642141 CYP3A7-CYP3A51PA0A087WV96 503 aa11.6□□□□□ -0.55
SCN1A-222ENST00000642141 CCDC194A0A1B0GVG4 234 aa11.6□□□□□ -0.55
SCN1A-222ENST00000642141 FAM205CA6NFA0 338 aa11.6□□□□□ -0.55
SCN1A-222ENST00000642141 DDX11L8A8MPP1 907 aa11.6□□□□□ -0.55
SCN1A-222ENST00000642141 H3BQ06 376 aaPredicted RBP11.6□□□□□ -0.55
SCN1A-222ENST00000642141 GPR32O75388 356 aa11.6□□□□□ -0.55
SCN1A-222ENST00000642141 LINC00271P0C7V0 271 aa11.6□□□□□ -0.55
SCN1A-222ENST00000642141 FGFR4P22455 802 aa11.6□□□□□ -0.55
SCN1A-222ENST00000642141 CYP3A7P24462 503 aa11.6□□□□□ -0.55
SCN1A-222ENST00000642141 NEK4P51957 841 aa11.6□□□□□ -0.55
SCN1A-222ENST00000642141 CRYBB1P53674 252 aaPredicted RBP11.6□□□□□ -0.55
SCN1A-222ENST00000642141 DRP2Q13474 957 aa11.6□□□□□ -0.55
SCN1A-222ENST00000642141 ME3Q16798 604 aa11.6□□□□□ -0.55
SCN1A-222ENST00000642141 MTERF2Q49AM1 385 aa11.6□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 59.9 ms