RNA–Protein interactions for RNA: ENST00000637439.1

CIITA-215, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 5

Gene CIITA, Length 850 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-215ENST00000637439 MCTP2Q6DN12 878 aa20.33■□□□□ 0.85
CIITA-215ENST00000637439 MIS18BP1Q6P0N0 1132 aa20.33■□□□□ 0.85
CIITA-215ENST00000637439 MSLNLQ96KJ4 702 aa20.33■□□□□ 0.85
CIITA-215ENST00000637439 ZNF302Q9NR11 478 aa20.33■□□□□ 0.85
CIITA-215ENST00000637439 C5orf42Q9H799 3197 aa20.33■□□□□ 0.84
CIITA-215ENST00000637439 FSD2A1L4K1 749 aa20.32■□□□□ 0.84
CIITA-215ENST00000637439 DENND3A2RUS2 1198 aa20.32■□□□□ 0.84
CIITA-215ENST00000637439 GPR182O15218 404 aa20.32■□□□□ 0.84
CIITA-215ENST00000637439 CCNE2O96020 404 aa20.32■□□□□ 0.84
CIITA-215ENST00000637439 TMEM266Q2M3C6 531 aa20.32■□□□□ 0.84
CIITA-215ENST00000637439 PDXDC2PQ6P474 469 aa20.32■□□□□ 0.84
CIITA-215ENST00000637439 PLA2G4DQ86XP0 818 aa20.32■□□□□ 0.84
CIITA-215ENST00000637439 KIAA0319LQ8IZA0 1049 aa20.32■□□□□ 0.84
CIITA-215ENST00000637439 ERVK-5Q9HDB9 667 aa20.32■□□□□ 0.84
CIITA-215ENST00000637439 RGS18Q9NS28 235 aa20.32■□□□□ 0.84
CIITA-215ENST00000637439 TMEM260Q9NX78 707 aa20.32■□□□□ 0.84
CIITA-215ENST00000637439 BRPF3Q9ULD4 1205 aa20.32■□□□□ 0.84
CIITA-215ENST00000637439 GINS2Q9Y248 185 aa20.32■□□□□ 0.84
CIITA-215ENST00000637439 PIEZO1Q92508 2521 aa20.31■□□□□ 0.84
CIITA-215ENST00000637439 GOLGA8AA7E2F4 631 aa20.31■□□□□ 0.84
CIITA-215ENST00000637439 GOLGA8BA8MQT2 603 aa20.31■□□□□ 0.84
CIITA-215ENST00000637439 DDX39AO00148 427 aaKnown RBP20.31■□□□□ 0.84
CIITA-215ENST00000637439 NRIP1P48552 1158 aa20.31■□□□□ 0.84
CIITA-215ENST00000637439 COASYQ13057 564 aa20.31■□□□□ 0.84
CIITA-215ENST00000637439 KRT32Q14532 448 aa20.31■□□□□ 0.84
CIITA-215ENST00000637439 TSGA10IPQ3SY00 556 aa20.31■□□□□ 0.84
CIITA-215ENST00000637439 BMP2KLQ5H9B9 411 aa20.31■□□□□ 0.84
CIITA-215ENST00000637439 SPOUT1Q5T280 376 aaKnown RBP20.31■□□□□ 0.84
CIITA-215ENST00000637439 SLC24A5Q71RS6 500 aa20.31■□□□□ 0.84
CIITA-215ENST00000637439 ADGRD2Q7Z7M1 963 aa20.31■□□□□ 0.84
CIITA-215ENST00000637439 RNF135Q8IUD6 432 aa20.31■□□□□ 0.84
CIITA-215ENST00000637439 CCDC60Q8IWA6 550 aaPredicted RBP20.31■□□□□ 0.84
CIITA-215ENST00000637439 MFSD14AQ96MC6 490 aa20.31■□□□□ 0.84
CIITA-215ENST00000637439 ADAM2Q99965 735 aa20.31■□□□□ 0.84
CIITA-215ENST00000637439 TBC1D22BQ9NU19 505 aa20.31■□□□□ 0.84
CIITA-215ENST00000637439 NOC2LQ9Y3T9 749 aaKnown RBP20.31■□□□□ 0.84
CIITA-215ENST00000637439 KLF18A0A0U1RQI7 1052 aa20.3■□□□□ 0.84
CIITA-215ENST00000637439 IPO5O00410 1097 aaKnown RBP20.3■□□□□ 0.84
CIITA-215ENST00000637439 CYP3A4P08684 503 aa20.3■□□□□ 0.84
CIITA-215ENST00000637439 HMGB1P09429 215 aaKnown RBP20.3■□□□□ 0.84
CIITA-215ENST00000637439 GATMP50440 423 aa20.3■□□□□ 0.84
CIITA-215ENST00000637439 SWSAP1Q6NVH7 229 aa20.3■□□□□ 0.84
CIITA-215ENST00000637439 SMRP1Q8NCR6 262 aa20.3■□□□□ 0.84
CIITA-215ENST00000637439 BBXQ8WY36 941 aaPredicted RBP20.3■□□□□ 0.84
CIITA-215ENST00000637439 TLE6Q9H808 572 aa20.3■□□□□ 0.84
CIITA-215ENST00000637439 CLEC1BQ9P126 229 aa20.3■□□□□ 0.84
CIITA-215ENST00000637439 TCEAL9Q9UHQ7 104 aa20.3■□□□□ 0.84
CIITA-215ENST00000637439 MUTYHQ9UIF7 546 aa20.3■□□□□ 0.84
CIITA-215ENST00000637439 ST3GAL5Q9UNP4 418 aa20.3■□□□□ 0.84
CIITA-215ENST00000637439 CCDC196A0A1B0GTZ2 297 aa20.29■□□□□ 0.84
CIITA-215ENST00000637439 FAM86B1E9PN63 330 aa20.29■□□□□ 0.84
CIITA-215ENST00000637439 DHX15O43143 795 aaKnown RBP20.29■□□□□ 0.84
CIITA-215ENST00000637439 MGEA5O60502 916 aa20.29■□□□□ 0.84
CIITA-215ENST00000637439 FAM86B2P0C5J1 330 aa20.29■□□□□ 0.84
CIITA-215ENST00000637439 IBSPP21815 317 aaPredicted RBP20.29■□□□□ 0.84
CIITA-215ENST00000637439 CRYBB1P53674 252 aaPredicted RBP20.29■□□□□ 0.84
CIITA-215ENST00000637439 SETQ01105 290 aaPredicted RBP20.29■□□□□ 0.84
CIITA-215ENST00000637439 PFKFB3Q16875 520 aaPredicted RBP20.29■□□□□ 0.84
CIITA-215ENST00000637439 PDE12Q6L8Q7 609 aaKnown RBP20.29■□□□□ 0.84
CIITA-215ENST00000637439 CKAP2LQ8IYA6 745 aa20.29■□□□□ 0.84
CIITA-215ENST00000637439 MICAL1Q8TDZ2 1067 aa20.29■□□□□ 0.84
CIITA-215ENST00000637439 CCDC12Q8WUD4 166 aaPredicted RBP20.29■□□□□ 0.84
CIITA-215ENST00000637439 TCEANC2Q96MN5 208 aa20.29■□□□□ 0.84
CIITA-215ENST00000637439 CDHR5Q9HBB8 845 aa20.29■□□□□ 0.84
CIITA-215ENST00000637439 FNDC1Q4ZHG4 1894 aaPredicted RBP20.28■□□□□ 0.84
CIITA-215ENST00000637439 PLXNA4Q9HCM2 1894 aa20.28■□□□□ 0.84
CIITA-215ENST00000637439 IGLV3-22A0A075B6J6 115 aa20.28■□□□□ 0.84
CIITA-215ENST00000637439 ESYT2A0FGR8 921 aa20.28■□□□□ 0.84
CIITA-215ENST00000637439 TBKBP1A7MCY6 615 aa20.28■□□□□ 0.84
CIITA-215ENST00000637439 ZBTB42B2RXF5 422 aa20.28■□□□□ 0.84
CIITA-215ENST00000637439 C9IYK1 514 aa20.28■□□□□ 0.84
CIITA-215ENST00000637439 PPFIA3O75145 1194 aa20.28■□□□□ 0.84
CIITA-215ENST00000637439 JAKMIP3Q5VZ66 844 aa20.28■□□□□ 0.84
CIITA-215ENST00000637439 ZNF746Q6NUN9 644 aaPredicted RBP20.28■□□□□ 0.84
CIITA-215ENST00000637439 HFE2Q6ZVN8 426 aa20.28■□□□□ 0.84
CIITA-215ENST00000637439 RBM23Q86U06 439 aaKnown RBP20.28■□□□□ 0.84
CIITA-215ENST00000637439 ALYREFQ86V81 257 aaKnown RBP20.28■□□□□ 0.84
CIITA-215ENST00000637439 SMAP1Q8IYB5 467 aaPredicted RBP20.28■□□□□ 0.84
CIITA-215ENST00000637439 TMEM40Q8WWA1 233 aa20.28■□□□□ 0.84
CIITA-215ENST00000637439 CRYGNQ8WXF5 182 aa20.28■□□□□ 0.84
CIITA-215ENST00000637439 EDAQ92838 391 aa20.28■□□□□ 0.84
CIITA-215ENST00000637439 CDCA3Q99618 268 aaPredicted RBP20.28■□□□□ 0.84
CIITA-215ENST00000637439 ZNF577Q9BSK1 485 aa20.28■□□□□ 0.84
CIITA-215ENST00000637439 ELAC1Q9H777 363 aaKnown RBP20.28■□□□□ 0.84
CIITA-215ENST00000637439 ATP6V0A4Q9HBG4 840 aa20.28■□□□□ 0.84
CIITA-215ENST00000637439 C6orf50Q9HD87 102 aa20.28■□□□□ 0.84
CIITA-215ENST00000637439 TLR9Q9NR96 1032 aa20.28■□□□□ 0.84
CIITA-215ENST00000637439 FAM217BQ9NTX9 383 aaPredicted RBP20.28■□□□□ 0.84
CIITA-215ENST00000637439 CEP131Q9UPN4 1083 aa20.28■□□□□ 0.84
CIITA-215ENST00000637439 MAFBQ9Y5Q3 323 aaPredicted RBP20.28■□□□□ 0.84
CIITA-215ENST00000637439 EVPLQ92817 2033 aa20.27■□□□□ 0.84
CIITA-215ENST00000637439 TRIOO75962 3097 aa20.27■□□□□ 0.84
CIITA-215ENST00000637439 C22orf31O95567 290 aa20.27■□□□□ 0.84
CIITA-215ENST00000637439 CDC27P30260 824 aa20.27■□□□□ 0.84
CIITA-215ENST00000637439 FGD1P98174 961 aa20.27■□□□□ 0.84
CIITA-215ENST00000637439 THNSL1Q8IYQ7 743 aa20.27■□□□□ 0.84
CIITA-215ENST00000637439 ZNF710Q8N1W2 664 aa20.27■□□□□ 0.84
CIITA-215ENST00000637439 FBXL18Q96ME1 805 aa20.27■□□□□ 0.84
CIITA-215ENST00000637439 ZMYND12Q9H0C1 365 aa20.27■□□□□ 0.84
CIITA-215ENST00000637439 TMEM161AQ9NX61 479 aa20.27■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms