RNA–Protein interactions for RNA: ENST00000636355.1

CLN3-248, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 975 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-248ENST00000636355 KIFAP3Q92845 792 aa11.7□□□□□ -0.54
CLN3-248ENST00000636355 EMID1Q96A84 441 aaPredicted RBP11.7□□□□□ -0.54
CLN3-248ENST00000636355 UIMC1Q96RL1 719 aa11.7□□□□□ -0.54
CLN3-248ENST00000636355 EFCC1Q9HA90 598 aa11.7□□□□□ -0.54
CLN3-248ENST00000636355 SAMSN1Q9NSI8 373 aaKnown RBP11.7□□□□□ -0.54
CLN3-248ENST00000636355 CGNQ9P2M7 1197 aaKnown RBP11.7□□□□□ -0.54
CLN3-248ENST00000636355 TRAF3IP3Q9Y228 551 aa11.7□□□□□ -0.54
CLN3-248ENST00000636355 ZKSCAN5Q9Y2L8 839 aa11.7□□□□□ -0.54
CLN3-248ENST00000636355 MAFBQ9Y5Q3 323 aaPredicted RBP11.7□□□□□ -0.54
CLN3-248ENST00000636355 RBM47A0AV96 593 aaKnown RBP11.69□□□□□ -0.54
CLN3-248ENST00000636355 TMEM88BA6NKF7 163 aa11.69□□□□□ -0.54
CLN3-248ENST00000636355 FAM155AB1AL88 458 aaPredicted RBP11.69□□□□□ -0.54
CLN3-248ENST00000636355 KCNJ18B7U540 433 aa11.69□□□□□ -0.54
CLN3-248ENST00000636355 H0YCG3 227 aa11.69□□□□□ -0.54
CLN3-248ENST00000636355 IGF2BP3O00425 579 aaKnown RBP eCLIP11.69□□□□□ -0.54
CLN3-248ENST00000636355 PDXKO00764 312 aa11.69□□□□□ -0.54
CLN3-248ENST00000636355 NKRFO15226 690 aaKnown RBP eCLIP11.69□□□□□ -0.54
CLN3-248ENST00000636355 GAS2O43903 313 aaKnown RBP11.69□□□□□ -0.54
CLN3-248ENST00000636355 TLR2O60603 784 aa11.69□□□□□ -0.54
CLN3-248ENST00000636355 PGK2P07205 417 aa11.69□□□□□ -0.54
CLN3-248ENST00000636355 HOXC6P09630 235 aa11.69□□□□□ -0.54
CLN3-248ENST00000636355 MARSP56192 900 aaKnown RBP11.69□□□□□ -0.54
CLN3-248ENST00000636355 STX17P56962 302 aa11.69□□□□□ -0.54
CLN3-248ENST00000636355 SNRPFP62306 86 aaKnown RBP11.69□□□□□ -0.54
CLN3-248ENST00000636355 FKBP3Q00688 224 aaKnown RBP11.69□□□□□ -0.54
CLN3-248ENST00000636355 KCNJ12Q14500 433 aa11.69□□□□□ -0.54
CLN3-248ENST00000636355 KRT31Q15323 416 aa11.69□□□□□ -0.54
CLN3-248ENST00000636355 UGCGQ16739 394 aa11.69□□□□□ -0.54
CLN3-248ENST00000636355 SPECC1LQ69YQ0 1117 aa11.69□□□□□ -0.54
CLN3-248ENST00000636355 CCDC62Q6P9F0 684 aa11.69□□□□□ -0.54
CLN3-248ENST00000636355 LRRC55Q6ZSA7 311 aa11.69□□□□□ -0.54
CLN3-248ENST00000636355 SEPT14Q6ZU15 432 aa11.69□□□□□ -0.54
CLN3-248ENST00000636355 ARMCX2Q7L311 632 aa11.69□□□□□ -0.54
CLN3-248ENST00000636355 CCDC60Q8IWA6 550 aaPredicted RBP11.69□□□□□ -0.54
CLN3-248ENST00000636355 DRC7Q8IY82 874 aa11.69□□□□□ -0.54
CLN3-248ENST00000636355 ZFP91Q96JP5 570 aaPredicted RBP11.69□□□□□ -0.54
CLN3-248ENST00000636355 DUSP9Q99956 384 aaKnown RBP11.69□□□□□ -0.54
CLN3-248ENST00000636355 MRPL44Q9H9J2 332 aaKnown RBP11.69□□□□□ -0.54
CLN3-248ENST00000636355 A0A1W2PQC6 194 aa11.68□□□□□ -0.54
CLN3-248ENST00000636355 TRIM49BA6NDI0 452 aa11.68□□□□□ -0.54
CLN3-248ENST00000636355 LGALS16A8MUM7 142 aa11.68□□□□□ -0.54
CLN3-248ENST00000636355 SLC16A3O15427 465 aaKnown RBP11.68□□□□□ -0.54
CLN3-248ENST00000636355 PEX10O60683 326 aa11.68□□□□□ -0.54
CLN3-248ENST00000636355 LGR5O75473 907 aa11.68□□□□□ -0.54
CLN3-248ENST00000636355 PPP1R37O75864 691 aa11.68□□□□□ -0.54
CLN3-248ENST00000636355 GGPS1O95749 300 aa11.68□□□□□ -0.54
CLN3-248ENST00000636355 OATP04181 439 aa11.68□□□□□ -0.54
CLN3-248ENST00000636355 PLS3P13797 630 aa11.68□□□□□ -0.54
CLN3-248ENST00000636355 RFC5P40937 340 aa11.68□□□□□ -0.54
CLN3-248ENST00000636355 PMS1P54277 932 aaKnown RBP11.68□□□□□ -0.54
CLN3-248ENST00000636355 PPP2R3AQ06190 1150 aa11.68□□□□□ -0.54
CLN3-248ENST00000636355 MKRN3Q13064 507 aaKnown RBP11.68□□□□□ -0.54
CLN3-248ENST00000636355 MAPK7Q13164 816 aa11.68□□□□□ -0.54
CLN3-248ENST00000636355 MYBPC2Q14324 1141 aa11.68□□□□□ -0.54
CLN3-248ENST00000636355 KNOP1Q1ED39 458 aaKnown RBP11.68□□□□□ -0.54
CLN3-248ENST00000636355 CELF3Q5SZQ8 465 aaKnown RBP11.68□□□□□ -0.54
CLN3-248ENST00000636355 FAM178BQ8IXR5 827 aa11.68□□□□□ -0.54
CLN3-248ENST00000636355 CCDC112Q8NEF3 446 aa11.68□□□□□ -0.54
CLN3-248ENST00000636355 ZNF507Q8TCN5 953 aa11.68□□□□□ -0.54
CLN3-248ENST00000636355 SCFD1Q8WVM8 642 aa11.68□□□□□ -0.54
CLN3-248ENST00000636355 SEPT1Q8WYJ6 367 aa11.68□□□□□ -0.54
CLN3-248ENST00000636355 KCTD10Q9H3F6 313 aa11.68□□□□□ -0.54
CLN3-248ENST00000636355 SEMA6BQ9H3T3 888 aa11.68□□□□□ -0.54
CLN3-248ENST00000636355 ZFYVE28Q9HCC9 887 aa11.68□□□□□ -0.54
CLN3-248ENST00000636355 RTN4Q9NQC3 1192 aaKnown RBP11.68□□□□□ -0.54
CLN3-248ENST00000636355 ZNF302Q9NR11 478 aa11.68□□□□□ -0.54
CLN3-248ENST00000636355 TYW1Q9NV66 732 aaKnown RBP11.68□□□□□ -0.54
CLN3-248ENST00000636355 GABBR1Q9UBS5 961 aa11.68□□□□□ -0.54
CLN3-248ENST00000636355 DDX41Q9UJV9 622 aaKnown RBP11.68□□□□□ -0.54
CLN3-248ENST00000636355 MAPK8IP1Q9UQF2 711 aa11.68□□□□□ -0.54
CLN3-248ENST00000636355 PCDHB13Q9Y5F0 798 aa11.68□□□□□ -0.54
CLN3-248ENST00000636355 PHLPP2Q6ZVD8 1323 aa11.67□□□□□ -0.54
CLN3-248ENST00000636355 BACH1O14867 736 aa11.67□□□□□ -0.54
CLN3-248ENST00000636355 CALUO43852 315 aaPredicted RBP11.67□□□□□ -0.54
CLN3-248ENST00000636355 ZNF862O60290 1169 aa11.67□□□□□ -0.54
CLN3-248ENST00000636355 HIP1RO75146 1068 aa11.67□□□□□ -0.54
CLN3-248ENST00000636355 RPL13P26373 211 aaKnown RBP11.67□□□□□ -0.54
CLN3-248ENST00000636355 PBX1P40424 430 aa11.67□□□□□ -0.54
CLN3-248ENST00000636355 KCNJ6P48051 423 aa11.67□□□□□ -0.54
CLN3-248ENST00000636355 TM4SF4P48230 202 aa11.67□□□□□ -0.54
CLN3-248ENST00000636355 COPB1P53618 953 aaKnown RBP11.67□□□□□ -0.54
CLN3-248ENST00000636355 SP2Q02086 613 aa11.67□□□□□ -0.54
CLN3-248ENST00000636355 NOGQ13253 232 aa11.67□□□□□ -0.54
CLN3-248ENST00000636355 HSP90AA2PQ14568 343 aaPredicted RBP11.67□□□□□ -0.54
CLN3-248ENST00000636355 NR1I3Q14994 352 aa11.67□□□□□ -0.54
CLN3-248ENST00000636355 XKR9Q5GH70 373 aa11.67□□□□□ -0.54
CLN3-248ENST00000636355 ODR4Q5SWX8 454 aa11.67□□□□□ -0.54
CLN3-248ENST00000636355 MORN1Q5T089 497 aa11.67□□□□□ -0.54
CLN3-248ENST00000636355 ANKRD40Q6AI12 368 aa11.67□□□□□ -0.54
CLN3-248ENST00000636355 C17orf99Q6UX52 265 aa11.67□□□□□ -0.54
CLN3-248ENST00000636355 ANO5Q75V66 913 aa11.67□□□□□ -0.54
CLN3-248ENST00000636355 CYFIP1Q7L576 1253 aa11.67□□□□□ -0.54
CLN3-248ENST00000636355 HS2ST1Q7LGA3 356 aa11.67□□□□□ -0.54
CLN3-248ENST00000636355 PLPPR4Q7Z2D5 763 aa11.67□□□□□ -0.54
CLN3-248ENST00000636355 IRF2BP1Q8IU81 584 aa11.67□□□□□ -0.54
CLN3-248ENST00000636355 SPIRE2Q8WWL2 714 aa11.67□□□□□ -0.54
CLN3-248ENST00000636355 MAML3Q96JK9 1138 aa11.67□□□□□ -0.54
CLN3-248ENST00000636355 CNOT6LQ96LI5 555 aaKnown RBP11.67□□□□□ -0.54
CLN3-248ENST00000636355 FIZ1Q96SL8 496 aa11.67□□□□□ -0.54
CLN3-248ENST00000636355 MKNK1Q9BUB5 465 aa11.67□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms