RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 GIT1Q9Y2X7 761 aa4.75□□□□□ -1.65
SCN1A-208ENST00000625916 REXO2Q9Y3B8 237 aaKnown RBP4.75□□□□□ -1.65
SCN1A-208ENST00000625916 A0A0G2JNJ9 132 aa4.74□□□□□ -1.65
SCN1A-208ENST00000625916 CAPN14A8MX76 684 aa4.74□□□□□ -1.65
SCN1A-208ENST00000625916 WNT9AO14904 365 aa4.74□□□□□ -1.65
SCN1A-208ENST00000625916 U2SURPO15042 1029 aaKnown RBP4.74□□□□□ -1.65
SCN1A-208ENST00000625916 C4BPAP04003 597 aaKnown RBP4.74□□□□□ -1.65
SCN1A-208ENST00000625916 NAT1P18440 290 aa4.74□□□□□ -1.65
SCN1A-208ENST00000625916 ECE1P42892 770 aa4.74□□□□□ -1.65
SCN1A-208ENST00000625916 JAM2P57087 298 aa4.74□□□□□ -1.65
SCN1A-208ENST00000625916 HERVK_113P62684 666 aa4.74□□□□□ -1.65
SCN1A-208ENST00000625916 STILQ15468 1287 aa4.74□□□□□ -1.65
SCN1A-208ENST00000625916 FAM47CQ5HY64 1035 aa4.74□□□□□ -1.65
SCN1A-208ENST00000625916 TRIM68Q6AZZ1 485 aa4.74□□□□□ -1.65
SCN1A-208ENST00000625916 LRSAM1Q6UWE0 723 aa4.74□□□□□ -1.65
SCN1A-208ENST00000625916 ADGRE4PQ86SQ3 457 aa4.74□□□□□ -1.65
SCN1A-208ENST00000625916 SCUBE1Q8IWY4 988 aa4.74□□□□□ -1.65
SCN1A-208ENST00000625916 THEMISQ8N1K5 641 aaPredicted RBP4.74□□□□□ -1.65
SCN1A-208ENST00000625916 BTBD7Q9P203 1132 aa4.74□□□□□ -1.65
SCN1A-208ENST00000625916 Q9UFV3 132 aa4.74□□□□□ -1.65
SCN1A-208ENST00000625916 CBLCQ9ULV8 474 aa4.74□□□□□ -1.65
SCN1A-208ENST00000625916 TRBV23-1A0A0A0MS06 115 aa4.73□□□□□ -1.65
SCN1A-208ENST00000625916 CYP27B1O15528 508 aa4.73□□□□□ -1.65
SCN1A-208ENST00000625916 PPFIA2O75334 1257 aa4.73□□□□□ -1.65
SCN1A-208ENST00000625916 DNM2P50570 870 aa4.73□□□□□ -1.65
SCN1A-208ENST00000625916 SUMO1P63165 101 aaKnown RBP4.73□□□□□ -1.65
SCN1A-208ENST00000625916 CRHR2Q13324 411 aa4.73□□□□□ -1.65
SCN1A-208ENST00000625916 MOGSQ13724 837 aa4.73□□□□□ -1.65
SCN1A-208ENST00000625916 RAB33AQ14088 237 aa4.73□□□□□ -1.65
SCN1A-208ENST00000625916 FNDC7Q5VTL7 733 aa4.73□□□□□ -1.65
SCN1A-208ENST00000625916 GRAMD4Q6IC98 578 aa4.73□□□□□ -1.65
SCN1A-208ENST00000625916 ZC3H7AQ8IWR0 971 aaKnown RBP4.73□□□□□ -1.65
SCN1A-208ENST00000625916 GPR135Q8IZ08 494 aa4.73□□□□□ -1.65
SCN1A-208ENST00000625916 SHCBP1Q8NEM2 672 aa4.73□□□□□ -1.65
SCN1A-208ENST00000625916 LARP4BQ92615 738 aaKnown RBP4.73□□□□□ -1.65
SCN1A-208ENST00000625916 ZNF669Q96BR6 464 aaPredicted RBP4.73□□□□□ -1.65
SCN1A-208ENST00000625916 AMNQ9BXJ7 453 aa4.73□□□□□ -1.65
SCN1A-208ENST00000625916 OR10A5Q9H207 317 aa4.73□□□□□ -1.65
SCN1A-208ENST00000625916 PARPBPQ9NWS1 579 aa4.73□□□□□ -1.65
SCN1A-208ENST00000625916 CCDC66A2RUB6 948 aa4.72□□□□□ -1.65
SCN1A-208ENST00000625916 ZNF561-AS1K7EIQ3 104 aa4.72□□□□□ -1.65
SCN1A-208ENST00000625916 ARVCFO00192 962 aa4.72□□□□□ -1.65
SCN1A-208ENST00000625916 SLC26A4O43511 780 aa4.72□□□□□ -1.65
SCN1A-208ENST00000625916 CLASP2O75122 1294 aaKnown RBP4.72□□□□□ -1.65
SCN1A-208ENST00000625916 MPIG6BO95866 241 aa4.72□□□□□ -1.65
SCN1A-208ENST00000625916 MMEP08473 750 aa4.72□□□□□ -1.65
SCN1A-208ENST00000625916 TGM1P22735 817 aa4.72□□□□□ -1.65
SCN1A-208ENST00000625916 STAT5BP51692 787 aa4.72□□□□□ -1.65
SCN1A-208ENST00000625916 NANOS3P60323 173 aaKnown RBP4.72□□□□□ -1.65
SCN1A-208ENST00000625916 KANK2Q63ZY3 851 aa4.72□□□□□ -1.65
SCN1A-208ENST00000625916 TMEM200BQ69YZ2 307 aa4.72□□□□□ -1.65
SCN1A-208ENST00000625916 MRGPRGQ86SM5 289 aa4.72□□□□□ -1.65
SCN1A-208ENST00000625916 ZNF575Q86XF7 245 aa4.72□□□□□ -1.65
SCN1A-208ENST00000625916 LDLRAD3Q86YD5 345 aa4.72□□□□□ -1.65
SCN1A-208ENST00000625916 DNAJC10Q8IXB1 793 aa4.72□□□□□ -1.65
SCN1A-208ENST00000625916 ZG16BQ96DA0 208 aa4.72□□□□□ -1.65
SCN1A-208ENST00000625916 CLIP3Q96DZ5 547 aa4.72□□□□□ -1.65
SCN1A-208ENST00000625916 ZNF703Q9H7S9 590 aaPredicted RBP4.72□□□□□ -1.65
SCN1A-208ENST00000625916 PCDHA9Q9Y5H5 950 aa4.72□□□□□ -1.65
SCN1A-208ENST00000625916 APPP05067 770 aa4.71□□□□□ -1.66
SCN1A-208ENST00000625916 HGFACQ04756 655 aa4.71□□□□□ -1.66
SCN1A-208ENST00000625916 FAM209AQ5JX71 171 aa4.71□□□□□ -1.66
SCN1A-208ENST00000625916 SPATC1Q76KD6 591 aa4.71□□□□□ -1.66
SCN1A-208ENST00000625916 TMPRSS6Q8IU80 811 aa4.71□□□□□ -1.66
SCN1A-208ENST00000625916 HIPK4Q8NE63 616 aa4.71□□□□□ -1.66
SCN1A-208ENST00000625916 SMURF1Q9HCE7 757 aa4.71□□□□□ -1.66
SCN1A-208ENST00000625916 CEP72Q9P209 647 aa4.71□□□□□ -1.66
SCN1A-208ENST00000625916 PFDN2Q9UHV9 154 aa4.71□□□□□ -1.66
SCN1A-208ENST00000625916 KRTAP23-1A1A580 65 aa4.7□□□□□ -1.66
SCN1A-208ENST00000625916 PRAMEF22A3QJZ6 481 aa4.7□□□□□ -1.66
SCN1A-208ENST00000625916 SCDO00767 359 aa4.7□□□□□ -1.66
SCN1A-208ENST00000625916 GABREP78334 506 aa4.7□□□□□ -1.66
SCN1A-208ENST00000625916 SSRP1Q08945 709 aaKnown RBP4.7□□□□□ -1.66
SCN1A-208ENST00000625916 RIN1Q13671 783 aa4.7□□□□□ -1.66
SCN1A-208ENST00000625916 RRP1BQ14684 758 aaKnown RBP4.7□□□□□ -1.66
SCN1A-208ENST00000625916 MTERF2Q49AM1 385 aa4.7□□□□□ -1.66
SCN1A-208ENST00000625916 CISD2Q8N5K1 135 aaKnown RBP4.7□□□□□ -1.66
SCN1A-208ENST00000625916 SLC43A3Q8NBI5 491 aa4.7□□□□□ -1.66
SCN1A-208ENST00000625916 ASB15Q8WXK1 588 aa4.7□□□□□ -1.66
SCN1A-208ENST00000625916 GBP4Q96PP9 640 aa4.7□□□□□ -1.66
SCN1A-208ENST00000625916 CRAMP1Q96RY5 1269 aa4.7□□□□□ -1.66
SCN1A-208ENST00000625916 GMLQ99445 158 aa4.7□□□□□ -1.66
SCN1A-208ENST00000625916 AGO3Q9H9G7 860 aaKnown RBP4.7□□□□□ -1.66
SCN1A-208ENST00000625916 SLC2A4RGQ9NR83 387 aa4.7□□□□□ -1.66
SCN1A-208ENST00000625916 A0A1W2PRX2 142 aa4.69□□□□□ -1.66
SCN1A-208ENST00000625916 PMS2P1A4D2B8 440 aa4.69□□□□□ -1.66
SCN1A-208ENST00000625916 CCDC85CA6NKD9 419 aa4.69□□□□□ -1.66
SCN1A-208ENST00000625916 FOXP2O15409 715 aa4.69□□□□□ -1.66
SCN1A-208ENST00000625916 PDPK1O15530 556 aa4.69□□□□□ -1.66
SCN1A-208ENST00000625916 ADCY3O60266 1144 aa4.69□□□□□ -1.66
SCN1A-208ENST00000625916 RAMP2O60895 175 aa4.69□□□□□ -1.66
SCN1A-208ENST00000625916 CRTAMO95727 393 aa4.69□□□□□ -1.66
SCN1A-208ENST00000625916 C6orf222P0C671 652 aaPredicted RBP4.69□□□□□ -1.66
SCN1A-208ENST00000625916 LACTBP83111 547 aaPredicted RBP4.69□□□□□ -1.66
SCN1A-208ENST00000625916 MAP3K12Q12852 859 aa4.69□□□□□ -1.66
SCN1A-208ENST00000625916 SEC23AQ15436 765 aa4.69□□□□□ -1.66
SCN1A-208ENST00000625916 SPTY2D1Q68D10 685 aaPredicted RBP4.69□□□□□ -1.66
SCN1A-208ENST00000625916 ZNF627Q7L945 461 aa4.69□□□□□ -1.66
SCN1A-208ENST00000625916 ZBTB38Q8NAP3 1195 aaPredicted RBP4.69□□□□□ -1.66
SCN1A-208ENST00000625916 CALML6Q8TD86 181 aa4.69□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 60.8 ms