RNA–Protein interactions for RNA: ENST00000606749.1

CUX1-219, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 601 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-219ENST00000606749 TMEM266Q2M3C6 531 aa8.64□□□□□ -1.03
CUX1-219ENST00000606749 TIGD5Q53EQ6 642 aa8.64□□□□□ -1.03
CUX1-219ENST00000606749 FAM43BQ6ZT52 329 aaPredicted RBP8.64□□□□□ -1.03
CUX1-219ENST00000606749 TRMT1LQ7Z2T5 733 aaKnown RBP8.64□□□□□ -1.03
CUX1-219ENST00000606749 NPAS4Q8IUM7 802 aa8.64□□□□□ -1.03
CUX1-219ENST00000606749 CKAP2LQ8IYA6 745 aa8.64□□□□□ -1.03
CUX1-219ENST00000606749 SMAP1Q8IYB5 467 aaPredicted RBP8.64□□□□□ -1.03
CUX1-219ENST00000606749 NEK9Q8TD19 979 aa8.64□□□□□ -1.03
CUX1-219ENST00000606749 BBXQ8WY36 941 aaPredicted RBP8.64□□□□□ -1.03
CUX1-219ENST00000606749 LENG9Q96B70 501 aa8.64□□□□□ -1.03
CUX1-219ENST00000606749 C11orf84Q9BUA3 381 aaPredicted RBP8.64□□□□□ -1.03
CUX1-219ENST00000606749 PLVAPQ9BX97 442 aa8.64□□□□□ -1.03
CUX1-219ENST00000606749 C1QTNF1Q9BXJ1 281 aa8.64□□□□□ -1.03
CUX1-219ENST00000606749 NSUN3Q9H649 340 aaKnown RBP8.64□□□□□ -1.03
CUX1-219ENST00000606749 EPHX3Q9H6B9 360 aa8.64□□□□□ -1.03
CUX1-219ENST00000606749 ERVK-5Q9HDB9 667 aa8.64□□□□□ -1.03
CUX1-219ENST00000606749 CD320Q9NPF0 282 aa8.64□□□□□ -1.03
CUX1-219ENST00000606749 SH3GLB2Q9NR46 395 aa8.64□□□□□ -1.03
CUX1-219ENST00000606749 VPS54Q9P1Q0 977 aa8.64□□□□□ -1.03
CUX1-219ENST00000606749 PLAGL2Q9UPG8 496 aa8.64□□□□□ -1.03
CUX1-219ENST00000606749 GINS2Q9Y248 185 aa8.64□□□□□ -1.03
CUX1-219ENST00000606749 COL4A6Q14031 1691 aa8.64□□□□□ -1.03
CUX1-219ENST00000606749 GPR182O15218 404 aa8.63□□□□□ -1.03
CUX1-219ENST00000606749 MSH4O15457 936 aa8.63□□□□□ -1.03
CUX1-219ENST00000606749 NCK2O43639 380 aa8.63□□□□□ -1.03
CUX1-219ENST00000606749 MGEA5O60502 916 aa8.63□□□□□ -1.03
CUX1-219ENST00000606749 GPR32O75388 356 aa8.63□□□□□ -1.03
CUX1-219ENST00000606749 RPS6KA5O75582 802 aa8.63□□□□□ -1.03
CUX1-219ENST00000606749 C22orf31O95567 290 aa8.63□□□□□ -1.03
CUX1-219ENST00000606749 SARSP49591 514 aaKnown RBP8.63□□□□□ -1.03
CUX1-219ENST00000606749 NLRP5P59047 1200 aa8.63□□□□□ -1.03
CUX1-219ENST00000606749 SSRP1Q08945 709 aaKnown RBP8.63□□□□□ -1.03
CUX1-219ENST00000606749 CAMK1Q14012 370 aa8.63□□□□□ -1.03
CUX1-219ENST00000606749 CTC1Q2NKJ3 1217 aa8.63□□□□□ -1.03
CUX1-219ENST00000606749 PUS10Q3MIT2 529 aaKnown RBP8.63□□□□□ -1.03
CUX1-219ENST00000606749 PTCRAQ6ISU1 281 aaPredicted RBP8.63□□□□□ -1.03
CUX1-219ENST00000606749 FAM178BQ8IXR5 827 aa8.63□□□□□ -1.03
CUX1-219ENST00000606749 CMTR2Q8IYT2 770 aaKnown RBP8.63□□□□□ -1.03
CUX1-219ENST00000606749 METTL13Q8N6R0 699 aa8.63□□□□□ -1.03
CUX1-219ENST00000606749 CCDC148Q8NFR7 591 aa8.63□□□□□ -1.03
CUX1-219ENST00000606749 TMEM40Q8WWA1 233 aa8.63□□□□□ -1.03
CUX1-219ENST00000606749 KHSRPQ92945 711 aaKnown RBP eCLIP8.63□□□□□ -1.03
CUX1-219ENST00000606749 P2RX5Q93086 422 aa8.63□□□□□ -1.03
CUX1-219ENST00000606749 PABPC5Q96DU9 382 aaKnown RBP8.63□□□□□ -1.03
CUX1-219ENST00000606749 ZNF274Q96GC6 653 aaPredicted RBP8.63□□□□□ -1.03
CUX1-219ENST00000606749 ADAM2Q99965 735 aa8.63□□□□□ -1.03
CUX1-219ENST00000606749 LARP6Q9BRS8 491 aaKnown RBP8.63□□□□□ -1.03
CUX1-219ENST00000606749 LMAN2LQ9H0V9 348 aa8.63□□□□□ -1.03
CUX1-219ENST00000606749 ALG13Q9NP73 1137 aaKnown RBP8.63□□□□□ -1.03
CUX1-219ENST00000606749 GABBR1Q9UBS5 961 aa8.63□□□□□ -1.03
CUX1-219ENST00000606749 ST3GAL5Q9UNP4 418 aa8.63□□□□□ -1.03
CUX1-219ENST00000606749 NOC2LQ9Y3T9 749 aaKnown RBP8.63□□□□□ -1.03
CUX1-219ENST00000606749 SAMM50Q9Y512 469 aa8.63□□□□□ -1.03
CUX1-219ENST00000606749 PCDHB7Q9Y5E2 793 aa8.63□□□□□ -1.03
CUX1-219ENST00000606749 CYP46A1Q9Y6A2 500 aa8.63□□□□□ -1.03
CUX1-219ENST00000606749 MRPL42Q9Y6G3 142 aaKnown RBP8.63□□□□□ -1.03
CUX1-219ENST00000606749 PI4K2BG5E9Z4 385 aa8.62□□□□□ -1.03
CUX1-219ENST00000606749 H3BQ06 376 aaPredicted RBP8.62□□□□□ -1.03
CUX1-219ENST00000606749 MAGEB2O15479 319 aa8.62□□□□□ -1.03
CUX1-219ENST00000606749 VTNP04004 478 aa8.62□□□□□ -1.03
CUX1-219ENST00000606749 IL9P15248 144 aa8.62□□□□□ -1.03
CUX1-219ENST00000606749 DNAJB1P25685 340 aa8.62□□□□□ -1.03
CUX1-219ENST00000606749 LTBRP36941 435 aa8.62□□□□□ -1.03
CUX1-219ENST00000606749 GATMP50440 423 aa8.62□□□□□ -1.03
CUX1-219ENST00000606749 CRYBB1P53674 252 aaPredicted RBP8.62□□□□□ -1.03
CUX1-219ENST00000606749 FAM189BP81408 668 aa8.62□□□□□ -1.03
CUX1-219ENST00000606749 HYAL1Q12794 435 aa8.62□□□□□ -1.03
CUX1-219ENST00000606749 KIZQ2M2Z5 673 aa8.62□□□□□ -1.03
CUX1-219ENST00000606749 PAN2Q504Q3 1202 aaKnown RBP8.62□□□□□ -1.03
CUX1-219ENST00000606749 NAALADL2Q58DX5 795 aa8.62□□□□□ -1.03
CUX1-219ENST00000606749 ODR4Q5SWX8 454 aa8.62□□□□□ -1.03
CUX1-219ENST00000606749 EFCAB12Q6NXP0 572 aa8.62□□□□□ -1.03
CUX1-219ENST00000606749 EP400NLQ6ZTU2 488 aa8.62□□□□□ -1.03
CUX1-219ENST00000606749 SLC24A5Q71RS6 500 aa8.62□□□□□ -1.03
CUX1-219ENST00000606749 TRIM22Q8IYM9 498 aa8.62□□□□□ -1.03
CUX1-219ENST00000606749 KLHL23Q8NBE8 558 aa8.62□□□□□ -1.03
CUX1-219ENST00000606749 SPPL3Q8TCT6 385 aa8.62□□□□□ -1.03
CUX1-219ENST00000606749 PPP1R16BQ96T49 567 aa8.62□□□□□ -1.03
CUX1-219ENST00000606749 RIT2Q99578 217 aa8.62□□□□□ -1.03
CUX1-219ENST00000606749 TM6SF1Q9BZW5 370 aa8.62□□□□□ -1.03
CUX1-219ENST00000606749 DISC1Q9NRI5 854 aa8.62□□□□□ -1.03
CUX1-219ENST00000606749 RGS18Q9NS28 235 aa8.62□□□□□ -1.03
CUX1-219ENST00000606749 C1orf112Q9NSG2 853 aa8.62□□□□□ -1.03
CUX1-219ENST00000606749 NRBP2Q9NSY0 501 aa8.62□□□□□ -1.03
CUX1-219ENST00000606749 CLDND1Q9NY35 253 aa8.62□□□□□ -1.03
CUX1-219ENST00000606749 TCEAL9Q9UHQ7 104 aa8.62□□□□□ -1.03
CUX1-219ENST00000606749 RAPGEFL1Q9UHV5 662 aa8.62□□□□□ -1.03
CUX1-219ENST00000606749 LRFN2Q9ULH4 789 aa8.62□□□□□ -1.03
CUX1-219ENST00000606749 PCDHA4Q9UN74 947 aa8.62□□□□□ -1.03
CUX1-219ENST00000606749 CEP131Q9UPN4 1083 aa8.62□□□□□ -1.03
CUX1-219ENST00000606749 LOXHD1Q8IVV2 1947 aa8.62□□□□□ -1.03
CUX1-219ENST00000606749 RALGAPA2Q2PPJ7 1873 aa8.62□□□□□ -1.03
CUX1-219ENST00000606749 EVPLQ92817 2033 aa8.61□□□□□ -1.03
CUX1-219ENST00000606749 CYP3A7-CYP3A51PA0A087WV96 503 aa8.61□□□□□ -1.03
CUX1-219ENST00000606749 DENND3A2RUS2 1198 aa8.61□□□□□ -1.03
CUX1-219ENST00000606749 WDR64B1ANS9 1081 aa8.61□□□□□ -1.03
CUX1-219ENST00000606749 C9IYK1 514 aa8.61□□□□□ -1.03
CUX1-219ENST00000606749 M0R2N6 131 aa8.61□□□□□ -1.03
CUX1-219ENST00000606749 CPLX1O14810 134 aa8.61□□□□□ -1.03
CUX1-219ENST00000606749 ZNF862O60290 1169 aa8.61□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms