RNA–Protein interactions for RNA: ENST00000596814.5

VRK3-212, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 1,736 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-212ENST00000596814 DGKDQ16760 1214 aa16.29■□□□□ 0.2
VRK3-212ENST00000596814 DPCR1Q3MIW9 517 aa16.29■□□□□ 0.2
VRK3-212ENST00000596814 MAP3K21Q5TCX8 1036 aa16.29■□□□□ 0.2
VRK3-212ENST00000596814 PADI6Q6TGC4 694 aa16.29■□□□□ 0.2
VRK3-212ENST00000596814 C1orf186Q6ZWK4 172 aa16.29■□□□□ 0.2
VRK3-212ENST00000596814 CEP170P1Q96L14 293 aa16.29■□□□□ 0.2
VRK3-212ENST00000596814 SH2D3AQ9BRG2 576 aa16.29■□□□□ 0.2
VRK3-212ENST00000596814 REEP2Q9BRK0 252 aa16.29■□□□□ 0.2
VRK3-212ENST00000596814 PTCH2Q9Y6C5 1203 aa16.29■□□□□ 0.2
VRK3-212ENST00000596814 MYH11P35749 1972 aa16.29■□□□□ 0.2
VRK3-212ENST00000596814 CEP350Q5VT06 3117 aa16.28■□□□□ 0.2
VRK3-212ENST00000596814 A6NJR5 290 aa16.28■□□□□ 0.2
VRK3-212ENST00000596814 USO1O60763 962 aaKnown RBP16.28■□□□□ 0.2
VRK3-212ENST00000596814 RHOBTB3O94955 611 aa16.28■□□□□ 0.2
VRK3-212ENST00000596814 ZNF286BP0CG31 522 aa16.28■□□□□ 0.2
VRK3-212ENST00000596814 MARK3P27448 753 aa16.28■□□□□ 0.2
VRK3-212ENST00000596814 CCND3P30281 292 aaPredicted RBP16.28■□□□□ 0.2
VRK3-212ENST00000596814 CPT1AP50416 773 aa16.28■□□□□ 0.2
VRK3-212ENST00000596814 NPEPPSP55786 919 aa16.28■□□□□ 0.2
VRK3-212ENST00000596814 CACNB1Q02641 598 aaPredicted RBP16.28■□□□□ 0.2
VRK3-212ENST00000596814 GIT2Q14161 759 aa16.28■□□□□ 0.2
VRK3-212ENST00000596814 ANO6Q4KMQ2 910 aa16.28■□□□□ 0.2
VRK3-212ENST00000596814 BRDTQ58F21 947 aaPredicted RBP16.28■□□□□ 0.2
VRK3-212ENST00000596814 CCDC65Q8IXS2 484 aa16.28■□□□□ 0.2
VRK3-212ENST00000596814 CYP26B1Q9NR63 512 aa16.28■□□□□ 0.2
VRK3-212ENST00000596814 NRBP2Q9NSY0 501 aa16.28■□□□□ 0.2
VRK3-212ENST00000596814 ERAP1Q9NZ08 941 aa16.28■□□□□ 0.2
VRK3-212ENST00000596814 ZNF215Q9UL58 517 aaPredicted RBP16.28■□□□□ 0.2
VRK3-212ENST00000596814 TBCAO75347 108 aaKnown RBP16.28■□□□□ 0.2
VRK3-212ENST00000596814 INHAP05111 366 aa16.28■□□□□ 0.2
VRK3-212ENST00000596814 RARBP10826 455 aa16.28■□□□□ 0.2
VRK3-212ENST00000596814 BMP6P22004 513 aa16.28■□□□□ 0.2
VRK3-212ENST00000596814 GUCY2CP25092 1073 aa16.28■□□□□ 0.2
VRK3-212ENST00000596814 GRK4P32298 578 aa16.28■□□□□ 0.2
VRK3-212ENST00000596814 MTERF2Q49AM1 385 aa16.28■□□□□ 0.2
VRK3-212ENST00000596814 GAS2L3Q86XJ1 694 aa16.28■□□□□ 0.2
VRK3-212ENST00000596814 ATP8B4Q8TF62 1192 aa16.28■□□□□ 0.2
VRK3-212ENST00000596814 BBXQ8WY36 941 aaPredicted RBP16.28■□□□□ 0.2
VRK3-212ENST00000596814 NIFKQ9BYG3 293 aaKnown RBP16.28■□□□□ 0.2
VRK3-212ENST00000596814 DNAJC25Q9H1X3 360 aa16.28■□□□□ 0.2
VRK3-212ENST00000596814 PANK4Q9NVE7 773 aa16.28■□□□□ 0.2
VRK3-212ENST00000596814 FRMD3A2A2Y4 597 aa16.27■□□□□ 0.19
VRK3-212ENST00000596814 COASYQ13057 564 aa16.27■□□□□ 0.19
VRK3-212ENST00000596814 PLCB4Q15147 1175 aa16.27■□□□□ 0.19
VRK3-212ENST00000596814 ZNF658Q5TYW1 1059 aaPredicted RBP16.27■□□□□ 0.19
VRK3-212ENST00000596814 C11orf57Q6ZUT1 292 aaPredicted RBP16.27■□□□□ 0.19
VRK3-212ENST00000596814 C16orf70Q9BSU1 422 aa16.27■□□□□ 0.19
VRK3-212ENST00000596814 TIPINQ9BVW5 301 aa16.27■□□□□ 0.19
VRK3-212ENST00000596814 ODF2LQ9ULJ1 636 aa16.27■□□□□ 0.19
VRK3-212ENST00000596814 TRPC6Q9Y210 931 aa16.27■□□□□ 0.19
VRK3-212ENST00000596814 SYNRGQ9UMZ2 1314 aa16.27■□□□□ 0.19
VRK3-212ENST00000596814 RSPH10B2B2RC85 870 aa16.26■□□□□ 0.19
VRK3-212ENST00000596814 FAM13AO94988 1023 aa16.26■□□□□ 0.19
VRK3-212ENST00000596814 RSPH10BP0C881 870 aa16.26■□□□□ 0.19
VRK3-212ENST00000596814 GJA9P57773 515 aa16.26■□□□□ 0.19
VRK3-212ENST00000596814 GSE1Q14687 1217 aa16.26■□□□□ 0.19
VRK3-212ENST00000596814 FSCN1Q16658 493 aaKnown RBP16.26■□□□□ 0.19
VRK3-212ENST00000596814 GTPBP4Q9BZE4 634 aaKnown RBP16.26■□□□□ 0.19
VRK3-212ENST00000596814 UPF3AQ9H1J1 476 aaKnown RBP16.26■□□□□ 0.19
VRK3-212ENST00000596814 ZHX3Q9H4I2 956 aa16.26■□□□□ 0.19
VRK3-212ENST00000596814 SPC25Q9HBM1 224 aa16.26■□□□□ 0.19
VRK3-212ENST00000596814 DACH1Q9UI36 760 aa16.26■□□□□ 0.19
VRK3-212ENST00000596814 PPME1Q9Y570 386 aa16.26■□□□□ 0.19
VRK3-212ENST00000596814 COL4A3BPQ9Y5P4 624 aa16.26■□□□□ 0.19
VRK3-212ENST00000596814 H3BRB1 525 aa16.25■□□□□ 0.19
VRK3-212ENST00000596814 HBP1O60381 514 aa16.25■□□□□ 0.19
VRK3-212ENST00000596814 DGAT1O75907 488 aa16.25■□□□□ 0.19
VRK3-212ENST00000596814 CAVIN2O95810 425 aa16.25■□□□□ 0.19
VRK3-212ENST00000596814 C6orf222P0C671 652 aaPredicted RBP16.25■□□□□ 0.19
VRK3-212ENST00000596814 BEX3Q00994 111 aa16.25■□□□□ 0.19
VRK3-212ENST00000596814 EHHADHQ08426 723 aa16.25■□□□□ 0.19
VRK3-212ENST00000596814 MLKLQ8NB16 471 aa16.25■□□□□ 0.19
VRK3-212ENST00000596814 NAT10Q9H0A0 1025 aaKnown RBP16.25■□□□□ 0.19
VRK3-212ENST00000596814 TUT1Q9H6E5 874 aaKnown RBP16.25■□□□□ 0.19
VRK3-212ENST00000596814 PTPN22Q9Y2R2 807 aa16.25■□□□□ 0.19
VRK3-212ENST00000596814 GDAQ9Y2T3 454 aa16.25■□□□□ 0.19
VRK3-212ENST00000596814 HIP1RO75146 1068 aa16.25■□□□□ 0.19
VRK3-212ENST00000596814 F2P00734 622 aa16.25■□□□□ 0.19
VRK3-212ENST00000596814 GAP43P17677 238 aa16.25■□□□□ 0.19
VRK3-212ENST00000596814 POLGP54098 1239 aaPredicted RBP16.25■□□□□ 0.19
VRK3-212ENST00000596814 IRX5P78411 483 aaPredicted RBP16.25■□□□□ 0.19
VRK3-212ENST00000596814 PSMD2Q13200 908 aa16.25■□□□□ 0.19
VRK3-212ENST00000596814 TARBP2Q15633 366 aaKnown RBP16.25■□□□□ 0.19
VRK3-212ENST00000596814 HERC4Q5GLZ8 1057 aaPredicted RBP16.25■□□□□ 0.19
VRK3-212ENST00000596814 FAM26FQ5R3K3 315 aa16.25■□□□□ 0.19
VRK3-212ENST00000596814 MAEAQ7L5Y9 396 aa16.25■□□□□ 0.19
VRK3-212ENST00000596814 SMYD4Q8IYR2 804 aaPredicted RBP16.25■□□□□ 0.19
VRK3-212ENST00000596814 MCPH1Q8NEM0 835 aa16.25■□□□□ 0.19
VRK3-212ENST00000596814 ATP6V0A4Q9HBG4 840 aa16.25■□□□□ 0.19
VRK3-212ENST00000596814 PARVGQ9HBI0 331 aa16.25■□□□□ 0.19
VRK3-212ENST00000596814 XPNPEP3Q9NQH7 507 aa16.25■□□□□ 0.19
VRK3-212ENST00000596814 DDX20Q9UHI6 824 aaKnown RBP16.25■□□□□ 0.19
VRK3-212ENST00000596814 FRMPD3Q5JV73 1810 aa16.25■□□□□ 0.19
VRK3-212ENST00000596814 HTTP42858 3142 aa16.24■□□□□ 0.19
VRK3-212ENST00000596814 MYADML2A6NDP7 307 aa16.24■□□□□ 0.19
VRK3-212ENST00000596814 PGK1P00558 417 aa16.24■□□□□ 0.19
VRK3-212ENST00000596814 MYL3P08590 195 aa16.24■□□□□ 0.19
VRK3-212ENST00000596814 HSPA8P11142 646 aaKnown RBP16.24■□□□□ 0.19
VRK3-212ENST00000596814 RFC5P40937 340 aa16.24■□□□□ 0.19
VRK3-212ENST00000596814 ZNF165P49910 485 aa16.24■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms