RNA–Protein interactions for RNA: ENST00000594759.5

LIG1-207, Transcript of DNA ligase 1, humanhuman

TSL 1 (best)

Gene LIG1, Length 4,102 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-207ENST00000594759 CALM1P0DP23 149 aa13.26□□□□□ -0.29
LIG1-207ENST00000594759 CALM2P0DP24 149 aa13.26□□□□□ -0.29
LIG1-207ENST00000594759 CALM3P0DP25 149 aa13.26□□□□□ -0.29
LIG1-207ENST00000594759 TARSP26639 723 aaKnown RBP13.26□□□□□ -0.29
LIG1-207ENST00000594759 CABP7Q86V35 215 aa13.26□□□□□ -0.29
LIG1-207ENST00000594759 TTLL11Q8NHH1 800 aa13.26□□□□□ -0.29
LIG1-207ENST00000594759 ZSWIM5Q9P217 1185 aa13.26□□□□□ -0.29
LIG1-207ENST00000594759 HAO1Q9UJM8 370 aa13.26□□□□□ -0.29
LIG1-207ENST00000594759 E7ENQ6 273 aa13.26□□□□□ -0.29
LIG1-207ENST00000594759 CAPN9O14815 690 aa13.26□□□□□ -0.29
LIG1-207ENST00000594759 PPIP5K2O43314 1243 aa13.26□□□□□ -0.29
LIG1-207ENST00000594759 DNAJC6O75061 913 aa13.26□□□□□ -0.29
LIG1-207ENST00000594759 KRT16P08779 473 aa13.26□□□□□ -0.29
LIG1-207ENST00000594759 LETM2Q2VYF4 491 aa13.26□□□□□ -0.29
LIG1-207ENST00000594759 ZC3H12AQ5D1E8 599 aaKnown RBP13.26□□□□□ -0.29
LIG1-207ENST00000594759 WDR60Q8WVS4 1066 aa13.26□□□□□ -0.29
LIG1-207ENST00000594759 PAGR1Q9BTK6 254 aa13.26□□□□□ -0.29
LIG1-207ENST00000594759 GDF3Q9NR23 364 aa13.26□□□□□ -0.29
LIG1-207ENST00000594759 NDE1Q9NXR1 346 aa13.26□□□□□ -0.29
LIG1-207ENST00000594759 PASKQ96RG2 1323 aa13.26□□□□□ -0.29
LIG1-207ENST00000594759 ARHGAP10A1A4S6 786 aa13.25□□□□□ -0.29
LIG1-207ENST00000594759 LONP1P36776 959 aaKnown RBP13.25□□□□□ -0.29
LIG1-207ENST00000594759 KLK7P49862 253 aa13.25□□□□□ -0.29
LIG1-207ENST00000594759 UAP1Q16222 522 aaPredicted RBP13.25□□□□□ -0.29
LIG1-207ENST00000594759 ZBTB38Q8NAP3 1195 aaPredicted RBP13.25□□□□□ -0.29
LIG1-207ENST00000594759 GFM2Q969S9 779 aaKnown RBP13.25□□□□□ -0.29
LIG1-207ENST00000594759 NMD3Q96D46 503 aaKnown RBP13.25□□□□□ -0.29
LIG1-207ENST00000594759 ZNF570Q96NI8 536 aa13.25□□□□□ -0.29
LIG1-207ENST00000594759 SPZ1Q9BXG8 430 aa13.25□□□□□ -0.29
LIG1-207ENST00000594759 TRPA1O75762 1119 aa13.25□□□□□ -0.29
LIG1-207ENST00000594759 NPTXRO95502 500 aa13.25□□□□□ -0.29
LIG1-207ENST00000594759 CTSWP56202 376 aa13.25□□□□□ -0.29
LIG1-207ENST00000594759 ZNF268Q14587 947 aaPredicted RBP13.25□□□□□ -0.29
LIG1-207ENST00000594759 PUM3Q15397 648 aaKnown RBP13.25□□□□□ -0.29
LIG1-207ENST00000594759 HLFQ16534 295 aa13.25□□□□□ -0.29
LIG1-207ENST00000594759 RILPQ96NA2 401 aa13.25□□□□□ -0.29
LIG1-207ENST00000594759 DNAAF2Q9NVR5 837 aaKnown RBP13.25□□□□□ -0.29
LIG1-207ENST00000594759 MAP2P11137 1827 aaKnown RBP13.25□□□□□ -0.29
LIG1-207ENST00000594759 HEG1Q9ULI3 1381 aa13.25□□□□□ -0.29
LIG1-207ENST00000594759 FAM205CA6NFA0 338 aa13.25□□□□□ -0.29
LIG1-207ENST00000594759 MED21Q13503 144 aa13.25□□□□□ -0.29
LIG1-207ENST00000594759 GRAMD1BQ3KR37 738 aa13.25□□□□□ -0.29
LIG1-207ENST00000594759 ERMARDQ5T6L9 678 aa13.25□□□□□ -0.29
LIG1-207ENST00000594759 SNX30Q5VWJ9 437 aa13.25□□□□□ -0.29
LIG1-207ENST00000594759 RASSF3Q86WH2 238 aa13.25□□□□□ -0.29
LIG1-207ENST00000594759 MREGQ8N565 214 aa13.25□□□□□ -0.29
LIG1-207ENST00000594759 SYT2Q8N9I0 419 aaPredicted RBP13.25□□□□□ -0.29
LIG1-207ENST00000594759 RMDN2Q96LZ7 410 aa13.25□□□□□ -0.29
LIG1-207ENST00000594759 MAP3K14Q99558 947 aa13.25□□□□□ -0.29
LIG1-207ENST00000594759 RXFP1Q9HBX9 757 aa13.25□□□□□ -0.29
LIG1-207ENST00000594759 USP40Q9NVE5 1235 aa13.25□□□□□ -0.29
LIG1-207ENST00000594759 DNAJC17Q9NVM6 304 aaKnown RBP13.25□□□□□ -0.29
LIG1-207ENST00000594759 SLC5A4Q9NY91 659 aa13.25□□□□□ -0.29
LIG1-207ENST00000594759 ARMCX3Q9UH62 379 aaPredicted RBP13.25□□□□□ -0.29
LIG1-207ENST00000594759 USP21Q9UK80 565 aa13.25□□□□□ -0.29
LIG1-207ENST00000594759 HDAC9Q9UKV0 1011 aa13.25□□□□□ -0.29
LIG1-207ENST00000594759 C1orf167Q5SNV9 1468 aa13.25□□□□□ -0.29
LIG1-207ENST00000594759 SPATA31D1Q6ZQQ2 1576 aa13.25□□□□□ -0.29
LIG1-207ENST00000594759 TMEM120BA0PK00 339 aa13.24□□□□□ -0.29
LIG1-207ENST00000594759 KBTBD12Q3ZCT8 623 aa13.24□□□□□ -0.29
LIG1-207ENST00000594759 KRT79Q5XKE5 535 aa13.24□□□□□ -0.29
LIG1-207ENST00000594759 TLDC1Q6P9B6 456 aa13.24□□□□□ -0.29
LIG1-207ENST00000594759 CATSPER2Q96P56 530 aa13.24□□□□□ -0.29
LIG1-207ENST00000594759 SEC31BQ9NQW1 1179 aa13.24□□□□□ -0.29
LIG1-207ENST00000594759 CTDP1Q9Y5B0 961 aaPredicted RBP13.24□□□□□ -0.29
LIG1-207ENST00000594759 CFAP69A5D8W1 941 aa13.24□□□□□ -0.29
LIG1-207ENST00000594759 SPDYE5A6NIY4 337 aa13.24□□□□□ -0.29
LIG1-207ENST00000594759 RIMBP2O15034 1052 aa13.24□□□□□ -0.29
LIG1-207ENST00000594759 SPAG7O75391 227 aa13.24□□□□□ -0.29
LIG1-207ENST00000594759 PDE5AO76074 875 aa13.24□□□□□ -0.29
LIG1-207ENST00000594759 GAS8O95995 478 aa13.24□□□□□ -0.29
LIG1-207ENST00000594759 SARSP49591 514 aaKnown RBP13.24□□□□□ -0.29
LIG1-207ENST00000594759 SLC29A2Q14542 456 aa13.24□□□□□ -0.29
LIG1-207ENST00000594759 PPP2R5BQ15173 497 aa13.24□□□□□ -0.29
LIG1-207ENST00000594759 C6orf89Q6UWU4 347 aa13.24□□□□□ -0.29
LIG1-207ENST00000594759 TBC1D10CQ8IV04 446 aa13.24□□□□□ -0.29
LIG1-207ENST00000594759 CRACR2BQ8N4Y2 399 aaPredicted RBP13.24□□□□□ -0.29
LIG1-207ENST00000594759 FAM161BQ96MY7 647 aa13.24□□□□□ -0.29
LIG1-207ENST00000594759 MAP3K15Q6ZN16 1313 aa13.24□□□□□ -0.29
LIG1-207ENST00000594759 NBPF26B4DH59 902 aa13.24□□□□□ -0.29
LIG1-207ENST00000594759 POC1B-GALNT4F8VUJ3 575 aa13.24□□□□□ -0.29
LIG1-207ENST00000594759 CRKLP46109 303 aaKnown RBP13.24□□□□□ -0.29
LIG1-207ENST00000594759 ANTXR2P58335 489 aa13.24□□□□□ -0.29
LIG1-207ENST00000594759 TMED2Q15363 201 aa13.24□□□□□ -0.29
LIG1-207ENST00000594759 KLC3Q6P597 504 aa13.24□□□□□ -0.29
LIG1-207ENST00000594759 ALKBH5Q6P6C2 394 aaKnown RBP13.24□□□□□ -0.29
LIG1-207ENST00000594759 NELFCDQ8IXH7 590 aa13.24□□□□□ -0.29
LIG1-207ENST00000594759 NBPF15Q8N660 670 aa13.24□□□□□ -0.29
LIG1-207ENST00000594759 TRIM51Q9BSJ1 452 aa13.24□□□□□ -0.29
LIG1-207ENST00000594759 PICK1Q9NRD5 415 aa13.24□□□□□ -0.29
LIG1-207ENST00000594759 METTL5Q9NRN9 209 aaKnown RBP13.24□□□□□ -0.29
LIG1-207ENST00000594759 TBC1D7Q9P0N9 293 aa13.24□□□□□ -0.29
LIG1-207ENST00000594759 TRAF3IP3Q9Y228 551 aa13.24□□□□□ -0.29
LIG1-207ENST00000594759 THRAP3Q9Y2W1 955 aaKnown RBP13.24□□□□□ -0.29
LIG1-207ENST00000594759 A0A0G2JND7 137 aa13.24□□□□□ -0.29
LIG1-207ENST00000594759 MAGEB6P1A0A0J9YX57 407 aa13.24□□□□□ -0.29
LIG1-207ENST00000594759 A8MUI8 341 aa13.24□□□□□ -0.29
LIG1-207ENST00000594759 ZWINTO95229 277 aa13.24□□□□□ -0.29
LIG1-207ENST00000594759 CA4P22748 312 aa13.24□□□□□ -0.29
LIG1-207ENST00000594759 PHKA1P46020 1223 aa13.24□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 262.7 ms