RNA–Protein interactions for RNA: ENST00000593582.5

TRIM28-203, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 533 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-203ENST00000593582 ETNPPLQ8TBG4 499 aa17.22■□□□□ 0.35
TRIM28-203ENST00000593582 TGS1Q96RS0 853 aaKnown RBP17.22■□□□□ 0.35
TRIM28-203ENST00000593582 NAP1L4Q99733 375 aaKnown RBP17.22■□□□□ 0.35
TRIM28-203ENST00000593582 AGO3Q9H9G7 860 aaKnown RBP17.22■□□□□ 0.35
TRIM28-203ENST00000593582 LIMCH1Q9UPQ0 1083 aa17.22■□□□□ 0.35
TRIM28-203ENST00000593582 XIRP2A4UGR9 3374 aa17.22■□□□□ 0.35
TRIM28-203ENST00000593582 KDM3AQ9Y4C1 1321 aa17.21■□□□□ 0.35
TRIM28-203ENST00000593582 PTPRSQ13332 1948 aa17.21■□□□□ 0.35
TRIM28-203ENST00000593582 EPOPA6NHQ4 379 aa17.21■□□□□ 0.35
TRIM28-203ENST00000593582 MAGEB2O15479 319 aa17.21■□□□□ 0.35
TRIM28-203ENST00000593582 SLC37A4O43826 429 aa17.21■□□□□ 0.35
TRIM28-203ENST00000593582 CCNT1O60563 726 aaKnown RBP17.21■□□□□ 0.35
TRIM28-203ENST00000593582 JAK2O60674 1132 aa17.21■□□□□ 0.35
TRIM28-203ENST00000593582 C22orf31O95567 290 aa17.21■□□□□ 0.35
TRIM28-203ENST00000593582 OATP04181 439 aa17.21■□□□□ 0.35
TRIM28-203ENST00000593582 PRKCEQ02156 737 aa17.21■□□□□ 0.35
TRIM28-203ENST00000593582 PAK2Q13177 524 aa17.21■□□□□ 0.35
TRIM28-203ENST00000593582 TRIM29Q14134 588 aa17.21■□□□□ 0.35
TRIM28-203ENST00000593582 CCDC85BQ15834 202 aaPredicted RBP17.21■□□□□ 0.35
TRIM28-203ENST00000593582 FTHL17Q9BXU8 183 aa17.21■□□□□ 0.35
TRIM28-203ENST00000593582 MTUS1Q9ULD2 1270 aa17.21■□□□□ 0.35
TRIM28-203ENST00000593582 PADI3Q9ULW8 664 aa17.21■□□□□ 0.35
TRIM28-203ENST00000593582 GINS2Q9Y248 185 aa17.21■□□□□ 0.35
TRIM28-203ENST00000593582 MYO9BQ13459 2157 aa17.21■□□□□ 0.34
TRIM28-203ENST00000593582 MICAL3Q7RTP6 2002 aa17.2■□□□□ 0.34
TRIM28-203ENST00000593582 ENPP3O14638 875 aa17.2■□□□□ 0.34
TRIM28-203ENST00000593582 ZNF862O60290 1169 aa17.2■□□□□ 0.34
TRIM28-203ENST00000593582 POU3F3P20264 500 aaPredicted RBP17.2■□□□□ 0.34
TRIM28-203ENST00000593582 TMOD1P28289 359 aa17.2■□□□□ 0.34
TRIM28-203ENST00000593582 ERVK-21P61565 698 aa17.2■□□□□ 0.34
TRIM28-203ENST00000593582 NR5A1Q13285 461 aa17.2■□□□□ 0.34
TRIM28-203ENST00000593582 B3GNT9Q6UX72 402 aa17.2■□□□□ 0.34
TRIM28-203ENST00000593582 SPRED2Q7Z698 418 aa17.2■□□□□ 0.34
TRIM28-203ENST00000593582 MICALL1Q8N3F8 863 aa17.2■□□□□ 0.34
TRIM28-203ENST00000593582 FAM20AQ96MK3 541 aa17.2■□□□□ 0.34
TRIM28-203ENST00000593582 SPTBN5Q9NRC6 3674 aaKnown RBP17.19■□□□□ 0.34
TRIM28-203ENST00000593582 MARCH6O60337 910 aa17.19■□□□□ 0.34
TRIM28-203ENST00000593582 MMP1P03956 469 aa17.19■□□□□ 0.34
TRIM28-203ENST00000593582 UGCGQ16739 394 aa17.19■□□□□ 0.34
TRIM28-203ENST00000593582 SP7Q8TDD2 431 aaPredicted RBP17.19■□□□□ 0.34
TRIM28-203ENST00000593582 TSPYL2Q9H2G4 693 aaPredicted RBP17.19■□□□□ 0.34
TRIM28-203ENST00000593582 KCNMB3Q9NPA1 279 aa17.19■□□□□ 0.34
TRIM28-203ENST00000593582 MTCH2Q9Y6C9 303 aa17.19■□□□□ 0.34
TRIM28-203ENST00000593582 DLL1O00548 723 aa17.18■□□□□ 0.34
TRIM28-203ENST00000593582 TBX3O15119 743 aa17.18■□□□□ 0.34
TRIM28-203ENST00000593582 RPS6KA5O75582 802 aa17.18■□□□□ 0.34
TRIM28-203ENST00000593582 TBC1D8BQ0IIM8 1120 aa17.18■□□□□ 0.34
TRIM28-203ENST00000593582 GRB10Q13322 594 aa17.18■□□□□ 0.34
TRIM28-203ENST00000593582 PPP2R5CQ13362 524 aa17.18■□□□□ 0.34
TRIM28-203ENST00000593582 KIZQ2M2Z5 673 aa17.18■□□□□ 0.34
TRIM28-203ENST00000593582 XKR3Q5GH77 459 aa17.18■□□□□ 0.34
TRIM28-203ENST00000593582 EARS2Q5JPH6 523 aaKnown RBP17.18■□□□□ 0.34
TRIM28-203ENST00000593582 ODR4Q5SWX8 454 aa17.18■□□□□ 0.34
TRIM28-203ENST00000593582 EFCAB12Q6NXP0 572 aa17.18■□□□□ 0.34
TRIM28-203ENST00000593582 FAM43BQ6ZT52 329 aaPredicted RBP17.18■□□□□ 0.34
TRIM28-203ENST00000593582 ZSCAN31Q96LW9 406 aaPredicted RBP17.18■□□□□ 0.34
TRIM28-203ENST00000593582 MAP7D2Q96T17 732 aa17.18■□□□□ 0.34
TRIM28-203ENST00000593582 LLPHQ9BRT6 129 aaKnown RBP17.18■□□□□ 0.34
TRIM28-203ENST00000593582 SUGCTQ9HAC7 445 aa17.18■□□□□ 0.34
TRIM28-203ENST00000593582 AKT3Q9Y243 479 aa17.18■□□□□ 0.34
TRIM28-203ENST00000593582 REV3LO60673 3130 aa17.18■□□□□ 0.34
TRIM28-203ENST00000593582 BTBD18B2RXH4 712 aa17.17■□□□□ 0.34
TRIM28-203ENST00000593582 LPXNO60711 386 aa17.17■□□□□ 0.34
TRIM28-203ENST00000593582 VTNP04004 478 aa17.17■□□□□ 0.34
TRIM28-203ENST00000593582 CLCN3P51790 818 aa17.17■□□□□ 0.34
TRIM28-203ENST00000593582 FOSBP53539 338 aa17.17■□□□□ 0.34
TRIM28-203ENST00000593582 CRYBB1P53674 252 aaPredicted RBP17.17■□□□□ 0.34
TRIM28-203ENST00000593582 ST3GAL1Q11201 340 aa17.17■□□□□ 0.34
TRIM28-203ENST00000593582 NFX1Q12986 1120 aaKnown RBP17.17■□□□□ 0.34
TRIM28-203ENST00000593582 TMEM266Q2M3C6 531 aa17.17■□□□□ 0.34
TRIM28-203ENST00000593582 KRT40Q6A162 431 aa17.17■□□□□ 0.34
TRIM28-203ENST00000593582 CCDC83Q8IWF9 413 aa17.17■□□□□ 0.34
TRIM28-203ENST00000593582 DIS3L2Q8IYB7 885 aaKnown RBP17.17■□□□□ 0.34
TRIM28-203ENST00000593582 ZNF710Q8N1W2 664 aa17.17■□□□□ 0.34
TRIM28-203ENST00000593582 BANK1Q8NDB2 785 aa17.17■□□□□ 0.34
TRIM28-203ENST00000593582 GDPD5Q8WTR4 605 aa17.17■□□□□ 0.34
TRIM28-203ENST00000593582 TNFRSF25Q93038 417 aa17.17■□□□□ 0.34
TRIM28-203ENST00000593582 SAMD11Q96NU1 681 aa17.17■□□□□ 0.34
TRIM28-203ENST00000593582 PPP1R16BQ96T49 567 aa17.17■□□□□ 0.34
TRIM28-203ENST00000593582 KIF2CQ99661 725 aa17.17■□□□□ 0.34
TRIM28-203ENST00000593582 C17orf80Q9BSJ5 609 aa17.17■□□□□ 0.34
TRIM28-203ENST00000593582 CDHR5Q9HBB8 845 aa17.17■□□□□ 0.34
TRIM28-203ENST00000593582 SH2B1Q9NRF2 756 aaPredicted RBP17.17■□□□□ 0.34
TRIM28-203ENST00000593582 SEPT9Q9UHD8 586 aaPredicted RBP17.17■□□□□ 0.34
TRIM28-203ENST00000593582 VAV3Q9UKW4 847 aa17.17■□□□□ 0.34
TRIM28-203ENST00000593582 MYH9P35579 1960 aaKnown RBP17.17■□□□□ 0.34
TRIM28-203ENST00000593582 SIP14410 1827 aa17.17■□□□□ 0.34
TRIM28-203ENST00000593582 FAM205CA6NFA0 338 aa17.16■□□□□ 0.34
TRIM28-203ENST00000593582 GPR182O15218 404 aa17.16■□□□□ 0.34
TRIM28-203ENST00000593582 BAG4O95429 457 aaKnown RBP17.16■□□□□ 0.34
TRIM28-203ENST00000593582 RBM25P49756 843 aaKnown RBP17.16■□□□□ 0.34
TRIM28-203ENST00000593582 PSMC5P62195 406 aa17.16■□□□□ 0.34
TRIM28-203ENST00000593582 SAFBQ15424 915 aaKnown RBP eCLIP17.16■□□□□ 0.34
TRIM28-203ENST00000593582 POTEDQ86YR6 584 aa17.16■□□□□ 0.34
TRIM28-203ENST00000593582 SLFN12Q8IYM2 578 aa17.16■□□□□ 0.34
TRIM28-203ENST00000593582 LRRC71Q8N4P6 559 aa17.16■□□□□ 0.34
TRIM28-203ENST00000593582 FIBCD1Q8N539 461 aa17.16■□□□□ 0.34
TRIM28-203ENST00000593582 FBXO22Q8NEZ5 403 aa17.16■□□□□ 0.34
TRIM28-203ENST00000593582 LINC01599Q8WXQ3 324 aa17.16■□□□□ 0.34
TRIM28-203ENST00000593582 HAS1Q92839 578 aa17.16■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 55.4 ms